Wall clock time and date at job start Tue Mar 31 2020 05:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 116.99730 * 2 1 4 4 C 1.38755 * 120.05839 * 0.02562 * 3 2 1 5 5 C 1.38117 * 119.94118 * 179.97438 * 4 3 2 6 6 C 1.38289 * 120.05983 * 0.02562 * 5 4 3 7 7 C 1.38243 * 120.11231 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.97464 * 180.02562 * 7 6 5 9 9 S 1.81402 * 109.47108 * 270.00168 * 8 7 6 10 10 O 1.42096 * 109.47138 * 63.61532 * 9 8 7 11 11 C 1.81405 * 102.99703 * 179.97438 * 9 8 7 12 12 C 1.52999 * 109.47050 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47523 * 179.97438 * 12 11 9 14 14 C 1.50700 * 109.47295 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99737 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99850 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99866 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99890 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47340 * 89.99654 * 18 16 14 20 20 H 1.48506 * 109.47024 * 209.99807 * 18 16 14 21 21 H 1.48503 * 109.47192 * 329.99450 * 18 16 14 22 22 C 1.38166 * 120.05257 * 0.02562 * 7 6 5 23 23 H 1.09007 * 109.47162 * 60.00566 * 1 2 3 24 24 H 1.08998 * 109.47469 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47521 * 300.00502 * 1 2 3 26 26 H 1.07995 * 120.02466 * 359.95817 * 4 3 2 27 27 H 1.08001 * 119.97105 * 180.02562 * 5 4 3 28 28 H 1.08000 * 119.94758 * 180.02562 * 6 5 4 29 29 H 1.09004 * 109.47353 * 30.00599 * 8 7 6 30 30 H 1.09000 * 109.47209 * 150.00024 * 8 7 6 31 31 H 1.09002 * 109.47089 * 299.99670 * 11 9 8 32 32 H 1.09003 * 109.47374 * 60.00078 * 11 9 8 33 33 H 1.09000 * 109.47357 * 300.00209 * 12 11 9 34 34 H 1.09003 * 109.47076 * 59.99764 * 12 11 9 35 35 H 1.09000 * 109.46993 * 300.00454 * 13 12 11 36 36 H 1.09003 * 109.47119 * 59.99813 * 13 12 11 37 37 H 0.96999 * 119.99641 * 180.02562 * 17 16 14 38 38 H 1.08002 * 120.02702 * 180.26943 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3019 3.6757 0.0005 7 6 4.0560 2.5171 0.0000 8 6 5.5608 2.5981 0.0000 9 16 6.1645 2.6315 -1.7103 10 8 5.6971 3.8085 -2.3547 11 6 7.9643 2.7291 -1.5057 12 6 8.6327 2.7665 -2.8815 13 6 10.1506 2.8495 -2.7091 14 6 10.8089 2.8857 -4.0643 15 1 10.2049 2.8532 -4.9590 16 6 12.1822 2.9613 -4.1618 17 7 12.7566 2.9934 -5.3444 18 14 13.2267 3.0182 -2.6142 19 1 13.5804 1.6354 -2.2045 20 1 14.4681 3.7878 -2.8828 21 1 12.4620 3.6769 -1.5248 22 6 3.4311 1.2848 -0.0005 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.2128 2.3203 0.0003 27 1 1.3340 4.5113 0.0019 28 1 3.7922 4.6380 0.0014 29 1 5.8758 3.5061 0.5143 30 1 5.9715 1.7288 0.5134 31 1 8.2188 3.6341 -0.9540 32 1 8.3153 1.8567 -0.9545 33 1 8.3783 1.8618 -3.4338 34 1 8.2817 3.6391 -3.4324 35 1 10.4047 3.7543 -2.1571 36 1 10.5020 1.9771 -2.1581 37 1 13.7227 3.0462 -5.4130 38 1 4.0206 0.3799 0.0034 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108127903.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:44 Heat of formation + Delta-G solvation = -64.364956 kcal Electronic energy + Delta-G solvation = -18734.457765 eV Core-core repulsion = 15668.626507 eV Total energy + Delta-G solvation = -3065.831258 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.36112 -37.87270 -35.50950 -34.55108 -32.78376 -32.07315 -30.73088 -28.17790 -27.76762 -26.93817 -23.29445 -22.77346 -21.46447 -20.17597 -18.14287 -17.30639 -16.68404 -16.52932 -16.22041 -16.04367 -15.33913 -14.98724 -14.75702 -14.34223 -14.17371 -13.84744 -13.39009 -13.23865 -12.85303 -12.70700 -12.33481 -12.15808 -12.04682 -11.83718 -11.60197 -11.38426 -11.14165 -11.10095 -10.83807 -10.56607 -9.95601 -9.78756 -9.65295 -9.20207 -8.88337 -8.53847 -8.45248 -7.98195 -6.03950 -4.02113 0.89991 1.22377 1.77316 2.76946 2.96183 3.29761 3.37449 3.40977 3.56900 3.91806 4.44933 4.45544 4.52428 4.75153 4.80036 4.80746 4.94946 5.11054 5.14540 5.23920 5.29010 5.36933 5.39979 5.48241 5.55884 5.80843 6.03357 6.07147 6.20700 6.36890 6.38178 6.48819 6.51094 6.84457 7.12283 7.26049 7.39299 7.78610 8.54019 9.01308 9.58226 11.09548 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.039849 B = 0.002775 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.488454 B =10087.792853 C =10201.488398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.128 3.872 4 C -0.213 4.213 5 C -0.076 4.076 6 C -0.148 4.148 7 C -0.020 4.020 8 C -0.418 4.418 9 S 1.239 4.761 10 O -0.838 6.838 11 C -0.441 4.441 12 C -0.085 4.085 13 C -0.008 4.008 14 C -0.522 4.522 15 H 0.073 0.927 16 C 0.066 3.934 17 N -0.903 5.903 18 Si 0.880 3.120 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.267 1.267 22 C -0.149 4.149 23 H 0.056 0.944 24 H 0.100 0.900 25 H 0.054 0.946 26 H 0.127 0.873 27 H 0.125 0.875 28 H 0.122 0.878 29 H 0.096 0.904 30 H 0.128 0.872 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.014 0.986 36 H 0.015 0.985 37 H 0.263 0.737 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.529 -6.647 14.657 29.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.083 3.917 4 C -0.232 4.232 5 C -0.094 4.094 6 C -0.168 4.168 7 C -0.021 4.021 8 C -0.552 4.552 9 S 1.439 4.561 10 O -0.834 6.834 11 C -0.579 4.579 12 C -0.124 4.124 13 C -0.047 4.047 14 C -0.561 4.561 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.542 5.542 18 Si 0.708 3.292 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.192 1.192 22 C -0.168 4.168 23 H 0.074 0.926 24 H 0.118 0.882 25 H 0.072 0.928 26 H 0.145 0.855 27 H 0.143 0.857 28 H 0.140 0.860 29 H 0.115 0.885 30 H 0.146 0.854 31 H 0.099 0.901 32 H 0.132 0.868 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.032 0.968 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -24.806 -6.828 13.743 29.169 hybrid contribution 1.116 2.135 1.964 3.108 sum -23.690 -4.692 15.707 28.809 Atomic orbital electron populations 1.23054 0.78440 1.03940 1.01333 1.86071 1.21321 1.26832 1.88754 1.18945 0.92229 0.84127 0.96407 1.21222 0.99980 0.92429 1.09599 1.20897 0.94357 0.97115 0.97039 1.21024 0.93963 0.98234 1.03532 1.18890 0.93029 0.92635 0.97582 1.26839 0.97797 1.08255 1.22266 1.70837 0.86961 1.13237 0.85025 1.93119 1.75236 1.52532 1.62468 1.27750 1.17175 1.07131 1.05891 1.21127 0.98117 1.01955 0.91234 1.19570 0.90939 0.96322 0.97870 1.21170 0.92065 1.50642 0.92175 0.90878 1.25041 0.98028 0.94601 0.95882 1.69917 1.10318 1.51002 1.22953 0.86769 0.79853 0.78428 0.84165 1.20182 1.21396 1.19172 1.20295 0.91427 0.98067 1.07056 0.92585 0.88198 0.92773 0.85522 0.85720 0.86029 0.88543 0.85400 0.90079 0.86786 0.91482 0.92228 0.96818 0.96715 0.92730 0.84277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.97 10.50 -19.42 -0.20 -3.17 16 3 C 0.13 1.32 6.69 -39.21 -0.26 1.06 16 4 C -0.21 -2.02 9.04 -39.43 -0.36 -2.38 16 5 C -0.08 -0.78 10.04 -39.61 -0.40 -1.17 16 6 C -0.15 -1.76 9.70 -39.56 -0.38 -2.15 16 7 C -0.02 -0.22 5.14 -104.65 -0.54 -0.76 16 8 C -0.42 -4.25 6.05 36.00 0.22 -4.03 16 9 S 1.24 15.60 13.14 -107.50 -1.41 14.19 16 10 O -0.84 -15.87 18.14 -35.23 -0.64 -16.51 16 11 C -0.44 -6.50 5.92 37.16 0.22 -6.28 16 12 C -0.09 -1.68 5.16 -26.73 -0.14 -1.82 16 13 C -0.01 -0.20 4.04 -27.88 -0.11 -0.31 16 14 C -0.52 -15.12 9.66 -34.44 -0.33 -15.45 16 15 H 0.07 2.26 7.99 -52.49 -0.42 1.85 16 16 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 17 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 18 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 21 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 22 C -0.15 -1.53 9.64 -39.43 -0.38 -1.91 16 23 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 24 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 26 H 0.13 0.88 6.30 -52.49 -0.33 0.55 16 27 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 28 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 29 H 0.10 1.03 8.09 -51.92 -0.42 0.61 16 30 H 0.13 0.90 8.08 -51.92 -0.42 0.48 16 31 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 32 H 0.11 1.34 8.14 -51.92 -0.42 0.91 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 36 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 334.06 15.07 5.03 5.03 Total: -1.00 -37.40 334.06 -8.39 -45.79 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -5.70 Total: -2.94 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: -1.57 Total: -32.22 kcal Atomic # 7 Polarization: -28.15 SS G_CDS: 0.77 Total: -27.38 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.84 Total: -19.67 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Atomic # 16 Polarization: 15.60 SS G_CDS: -1.41 Total: 14.19 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -37.40 -8.39 -45.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108127903.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.578 kcal (2) G-P(sol) polarization free energy of solvation -37.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds