Wall clock time and date at job start Tue Mar 31 2020 05:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31693 * 119.72137 * 2 1 4 4 C 1.31927 * 121.88752 * 180.02562 * 3 2 1 5 5 C 1.38357 * 121.08138 * 359.97438 * 4 3 2 6 6 C 1.38349 * 119.30712 * 0.02562 * 5 4 3 7 7 C 1.39550 * 119.72199 * 180.27631 * 2 1 3 8 8 C 1.47793 * 120.55684 * 0.02562 * 7 2 1 9 9 O 1.21562 * 120.00298 * 7.49808 * 8 7 2 10 10 N 1.34773 * 119.99923 * 187.49641 * 8 7 2 11 11 C 1.39133 * 120.00137 * 184.84990 * 10 8 7 12 12 C 1.39505 * 119.83503 * 213.03217 * 11 10 8 13 13 C 1.36364 * 120.16490 * 179.71959 * 12 11 10 14 14 C 1.40873 * 119.82801 * 0.57306 * 13 12 11 15 15 C 1.41138 * 120.16312 * 179.67546 * 14 13 12 16 16 H 1.07994 * 120.00383 * 205.07541 * 15 14 13 17 17 C 1.39917 * 119.99753 * 25.07821 * 15 14 13 18 18 N 1.30869 * 119.99683 * 14.63804 * 17 15 14 19 19 Si 1.86800 * 119.99935 * 194.64189 * 17 15 14 20 20 H 1.48496 * 109.47276 * 89.99528 * 19 17 15 21 21 H 1.48499 * 109.47234 * 209.99719 * 19 17 15 22 22 H 1.48505 * 109.47128 * 329.99848 * 19 17 15 23 23 C 1.40878 * 119.67832 * 359.70094 * 14 13 12 24 24 C 1.36364 * 119.83173 * 359.97438 * 23 14 13 25 25 H 1.09000 * 109.47272 * 96.78731 * 1 2 3 26 26 H 1.08999 * 109.47252 * 216.79384 * 1 2 3 27 27 H 1.09009 * 109.46766 * 336.79022 * 1 2 3 28 28 H 1.07998 * 119.45880 * 180.02562 * 4 3 2 29 29 H 1.08004 * 120.34827 * 179.97438 * 5 4 3 30 30 H 1.08002 * 120.85870 * 180.02562 * 6 5 4 31 31 H 0.97005 * 120.00330 * 4.85819 * 10 8 7 32 32 H 1.08006 * 119.92084 * 359.97438 * 12 11 10 33 33 H 1.08003 * 120.08876 * 180.25031 * 13 12 11 34 34 H 0.97006 * 119.99219 * 179.97438 * 18 17 15 35 35 H 1.08004 * 120.08486 * 179.97438 * 23 14 13 36 36 H 1.08000 * 119.91598 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1437 0.0000 4 6 3.4782 1.1935 -0.0005 5 6 4.2368 0.0364 -0.0005 6 6 3.5991 -1.1913 -0.0005 7 6 2.1989 -1.2119 -0.0058 8 6 1.4661 -2.4954 -0.0126 9 8 0.2584 -2.5051 -0.1505 10 7 2.1370 -3.6551 0.1341 11 6 1.4625 -4.8673 0.0270 12 6 1.8705 -5.9586 0.7942 13 6 1.2107 -7.1482 0.6988 14 6 0.1222 -7.2768 -0.1862 15 6 -0.5614 -8.5067 -0.2956 16 1 -1.0937 -8.7498 -1.2032 17 6 -0.5493 -9.4111 0.7719 18 7 -0.1615 -9.0178 1.9583 19 14 -1.0868 -11.1799 0.5036 20 1 0.0887 -12.0015 0.1186 21 1 -1.6748 -11.7143 1.7582 22 1 -2.1018 -11.2300 -0.5793 23 6 -0.2803 -6.1719 -0.9620 24 6 0.3850 -4.9867 -0.8509 25 1 -0.3634 -0.1215 -1.0205 26 1 -0.3634 -0.8229 0.6155 27 1 -0.3633 0.9446 0.4050 28 1 3.9734 2.1533 -0.0001 29 1 5.3154 0.0911 -0.0014 30 1 4.1666 -2.1103 -0.0002 31 1 3.0900 -3.6447 0.3145 32 1 2.7084 -5.8600 1.4685 33 1 1.5250 -7.9912 1.2964 34 1 -0.1535 -9.6448 2.6984 35 1 -1.1136 -6.2632 -1.6429 36 1 0.0773 -4.1386 -1.4447 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108153648.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:07 Heat of formation + Delta-G solvation = 22.919662 kcal Electronic energy + Delta-G solvation = -20584.803938 eV Core-core repulsion = 17419.606425 eV Total energy + Delta-G solvation = -3165.197513 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.76474 -39.14703 -37.23837 -34.71724 -33.43647 -32.70799 -32.29500 -29.63653 -29.02116 -27.69285 -25.36218 -24.19079 -22.30715 -21.74030 -20.85331 -19.82863 -17.76944 -17.35248 -16.86138 -16.35069 -15.72820 -15.25135 -15.03101 -14.84441 -14.08444 -13.85463 -13.56567 -13.28968 -12.96178 -12.71251 -12.39908 -12.34653 -12.11239 -11.92743 -11.83627 -11.34888 -11.16377 -11.06036 -10.75934 -10.04599 -10.01720 -9.78606 -9.63804 -9.39826 -9.13332 -9.08158 -8.88513 -7.58923 -7.01406 -6.76911 -4.34798 0.60047 1.04701 2.56733 3.00158 3.04578 3.06910 3.08639 3.29711 3.56869 3.83380 3.89952 4.20642 4.55081 4.60885 4.62722 4.72710 4.97143 5.32103 5.43779 5.65090 5.67070 5.84503 5.87287 6.04883 6.14914 6.24020 6.37906 6.58218 6.73205 6.87538 7.00005 7.14216 7.23761 7.55484 7.66186 7.79866 7.83529 7.99185 8.21821 8.23803 8.54711 8.66980 8.84281 8.94689 10.13957 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.044079 B = 0.003326 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.067029 B = 8416.106167 C = 8757.929686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.186 3.814 3 N -0.492 5.492 4 C 0.119 3.881 5 C -0.190 4.190 6 C -0.044 4.044 7 C -0.179 4.179 8 C 0.542 3.458 9 O -0.518 6.518 10 N -0.640 5.640 11 C -0.010 4.010 12 C -0.113 4.113 13 C -0.153 4.153 14 C 0.105 3.895 15 C -0.454 4.454 16 H 0.079 0.921 17 C 0.072 3.928 18 N -0.793 5.793 19 Si 0.912 3.088 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.215 4.215 24 C -0.075 4.075 25 H 0.083 0.917 26 H 0.104 0.896 27 H 0.066 0.934 28 H 0.158 0.842 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.393 0.607 32 H 0.090 0.910 33 H 0.125 0.875 34 H 0.281 0.719 35 H 0.096 0.904 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.822 11.953 -1.427 14.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.048 3.952 3 N -0.202 5.202 4 C -0.038 4.038 5 C -0.210 4.210 6 C -0.070 4.070 7 C -0.185 4.185 8 C 0.329 3.671 9 O -0.396 6.396 10 N -0.283 5.283 11 C -0.103 4.103 12 C -0.133 4.133 13 C -0.172 4.172 14 C 0.102 3.898 15 C -0.483 4.483 16 H 0.097 0.903 17 C -0.145 4.145 18 N -0.419 5.419 19 Si 0.736 3.264 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.186 1.186 23 C -0.235 4.235 24 C -0.094 4.094 25 H 0.102 0.898 26 H 0.122 0.878 27 H 0.085 0.915 28 H 0.175 0.825 29 H 0.157 0.843 30 H 0.156 0.844 31 H 0.227 0.773 32 H 0.108 0.892 33 H 0.143 0.857 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.498 12.632 -1.290 14.746 hybrid contribution 0.990 -1.525 0.162 1.826 sum 8.488 11.106 -1.128 14.024 Atomic orbital electron populations 1.21043 0.87420 1.03711 1.04396 1.21572 0.97724 0.86506 0.89385 1.67654 1.09925 1.28830 1.13756 1.22943 0.89542 0.98645 0.92702 1.22048 1.01651 0.93106 1.04165 1.21806 0.93284 0.98948 0.92964 1.20964 0.94356 0.95532 1.07629 1.17954 0.87192 0.83102 0.78841 1.90738 1.13297 1.86504 1.49041 1.42874 1.11108 1.04698 1.69591 1.17138 1.02537 0.84808 1.05786 1.20229 1.00606 0.93890 0.98564 1.20975 0.96562 0.96622 1.03088 1.17688 0.90026 0.91936 0.90124 1.19604 1.28058 1.00098 1.00579 0.90312 1.25950 0.93395 1.00816 0.94369 1.69829 1.35381 1.36220 1.00439 0.86251 0.79682 0.81597 0.78849 1.19279 1.20281 1.18578 1.20662 1.02740 0.93057 1.07056 1.20259 0.95451 0.97036 0.96699 0.89819 0.87767 0.91493 0.82453 0.84300 0.84400 0.77306 0.89189 0.85703 0.90824 0.88622 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 8.83 36.00 0.32 -1.22 16 2 C 0.19 2.70 6.82 -82.16 -0.56 2.14 16 3 N -0.49 -6.53 10.26 -9.14 -0.09 -6.62 16 4 C 0.12 1.20 11.17 -17.47 -0.20 1.01 16 5 C -0.19 -1.72 10.10 -39.50 -0.40 -2.11 16 6 C -0.04 -0.48 9.61 -38.86 -0.37 -0.85 16 7 C -0.18 -2.58 5.89 -104.82 -0.62 -3.20 16 8 C 0.54 9.60 7.42 -12.35 -0.09 9.51 16 9 O -0.52 -10.75 11.05 5.31 0.06 -10.69 16 10 N -0.64 -11.21 5.25 -10.61 -0.06 -11.26 16 11 C -0.01 -0.23 6.29 -83.60 -0.53 -0.76 16 12 C -0.11 -2.53 9.89 -39.78 -0.39 -2.93 16 13 C -0.15 -3.86 8.63 -39.26 -0.34 -4.19 16 14 C 0.11 2.77 5.58 -106.80 -0.60 2.18 16 15 C -0.45 -11.88 9.05 -37.85 -0.34 -12.22 16 16 H 0.08 1.98 7.89 -52.49 -0.41 1.57 16 17 C 0.07 1.78 5.20 -17.33 -0.09 1.69 16 18 N -0.79 -20.14 10.80 55.55 0.60 -19.54 16 19 Si 0.91 18.36 29.58 -169.99 -5.03 13.33 16 20 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 21 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 23 C -0.22 -5.38 9.74 -39.26 -0.38 -5.76 16 24 C -0.07 -1.76 8.57 -39.78 -0.34 -2.10 16 25 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.10 1.67 5.93 -51.93 -0.31 1.36 16 27 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 28 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.14 0.80 8.06 -52.48 -0.42 0.37 16 30 H 0.14 1.17 6.63 -52.49 -0.35 0.82 16 31 H 0.39 5.37 7.02 -40.82 -0.29 5.08 16 32 H 0.09 1.76 8.06 -52.48 -0.42 1.33 16 33 H 0.13 3.23 6.07 -52.48 -0.32 2.91 16 34 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 35 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 36 H 0.10 2.39 6.37 -52.49 -0.33 2.05 16 LS Contribution 307.77 15.07 4.64 4.64 Total: -1.00 -30.02 307.77 -8.49 -38.51 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -3.68 Total: 10.46 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -4.93 Total: -18.83 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.45 Total: -37.43 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.06 Total: -10.69 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.02 -8.49 -38.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108153648.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.434 kcal (2) G-P(sol) polarization free energy of solvation -30.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds