Wall clock time and date at job start Tue Mar 31 2020 05:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86806 * 119.99913 * 2 1 4 4 H 1.48497 * 109.47151 * 274.98803 * 3 2 1 5 5 H 1.48504 * 109.46828 * 34.98795 * 3 2 1 6 6 H 1.48497 * 109.47037 * 154.98850 * 3 2 1 7 7 C 1.39902 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99907 * 147.61033 * 7 2 1 9 9 C 1.41156 * 120.00060 * 327.60531 * 7 2 1 10 10 C 1.40866 * 120.16213 * 158.01295 * 9 7 2 11 11 C 1.36372 * 119.82823 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.16841 * 0.02562 * 11 10 9 13 13 N 1.39240 * 119.83147 * 179.97438 * 12 11 10 14 14 C 1.34775 * 119.99659 * 142.47828 * 13 12 11 15 15 O 1.21283 * 119.99887 * 3.01296 * 14 13 12 16 16 C 1.50701 * 119.99909 * 183.00678 * 14 13 12 17 17 C 1.50702 * 109.46999 * 180.02562 * 16 14 13 18 18 C 1.38658 * 120.78565 * 269.72044 * 17 16 14 19 19 C 1.38204 * 119.15838 * 179.80178 * 18 17 16 20 20 N 1.31873 * 120.76402 * 0.48186 * 19 18 17 21 21 C 1.31867 * 121.72643 * 359.74500 * 20 19 18 22 22 C 1.38203 * 120.76550 * 0.02562 * 21 20 19 23 23 C 1.39482 * 120.33358 * 0.25650 * 12 11 10 24 24 C 1.36373 * 120.16598 * 359.44163 * 23 12 11 25 25 H 0.97004 * 120.00041 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.08499 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.91313 * 180.02562 * 11 10 9 28 28 H 0.96997 * 120.00300 * 322.20308 * 13 12 11 29 29 H 1.08998 * 109.47226 * 299.99967 * 16 14 13 30 30 H 1.09001 * 109.47014 * 60.00398 * 16 14 13 31 31 H 1.07995 * 120.42127 * 0.02562 * 18 17 16 32 32 H 1.08000 * 119.61899 * 180.20740 * 19 18 17 33 33 H 1.07998 * 119.61522 * 179.97438 * 21 20 19 34 34 H 1.07995 * 120.41571 * 179.97438 * 22 21 20 35 35 H 1.07993 * 119.91368 * 179.72580 * 23 12 11 36 36 H 1.08001 * 120.08816 * 180.25207 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.3848 2.1074 -1.3947 5 1 1.4968 2.6200 0.8028 6 1 3.5890 1.4121 0.5919 7 6 2.0082 -1.2116 -0.0005 8 1 2.9623 -1.2841 -0.5016 9 6 1.4672 -2.3392 0.6539 10 6 1.8863 -3.6351 0.2941 11 6 1.3587 -4.7197 0.9305 12 6 0.4061 -4.5484 1.9348 13 7 -0.1283 -5.6608 2.5796 14 6 -0.3939 -5.6113 3.9000 15 8 -0.2190 -4.5810 4.5155 16 6 -0.9086 -6.8361 4.6115 17 6 -1.1240 -6.5172 6.0685 18 6 -0.1082 -6.7043 6.9937 19 6 -0.3412 -6.3970 8.3208 20 7 -1.5150 -5.9402 8.7114 21 6 -2.5049 -5.7543 7.8603 22 6 -2.3443 -6.0352 6.5167 23 6 -0.0181 -3.2687 2.2925 24 6 0.5049 -2.1742 1.6693 25 1 -0.4850 0.8401 0.0004 26 1 2.6229 -3.7693 -0.4842 27 1 1.6794 -5.7139 0.6560 28 1 -0.3131 -6.4701 2.0777 29 1 -1.8530 -7.1461 4.1643 30 1 -0.1809 -7.6424 4.5194 31 1 0.8538 -7.0820 6.6806 32 1 0.4458 -6.5367 9.0471 33 1 -3.4525 -5.3789 8.2176 34 1 -3.1589 -5.8813 5.8247 35 1 -0.7593 -3.1442 3.0680 36 1 0.1785 -1.1838 1.9501 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120978521.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:02 Heat of formation + Delta-G solvation = 16.222575 kcal Electronic energy + Delta-G solvation = -20345.031154 eV Core-core repulsion = 17179.543233 eV Total energy + Delta-G solvation = -3165.487921 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.39264 -39.36175 -37.27951 -34.55310 -33.80101 -33.03616 -31.22403 -29.69274 -29.43031 -28.18194 -24.93265 -23.49726 -22.65933 -21.39894 -20.94455 -19.55796 -17.42715 -17.15556 -16.62341 -16.48337 -16.10522 -15.59132 -15.25059 -14.71714 -14.07907 -13.95573 -13.70745 -13.45378 -13.24814 -12.77775 -12.64515 -12.30661 -12.10645 -11.98649 -11.52262 -11.30309 -11.16963 -11.12095 -10.68010 -10.11253 -9.77690 -9.65266 -9.53809 -9.35495 -9.15922 -8.96746 -8.90824 -7.56614 -7.19011 -6.88093 -4.30367 1.13130 1.20004 2.55444 2.94167 3.04747 3.07182 3.11699 3.31772 3.60805 3.88043 3.95912 4.41052 4.46902 4.49025 4.67099 5.03418 5.09873 5.16297 5.27787 5.31685 5.60575 5.66186 5.73668 5.93262 6.11743 6.26642 6.36640 6.66792 6.75757 6.94861 7.01311 7.06853 7.25572 7.53308 7.63747 7.90622 7.94041 8.00843 8.16868 8.26189 8.55110 8.73637 8.81466 8.97303 10.00663 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.025200 B = 0.003472 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.856455 B = 8061.971272 C = 8654.916551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.896 3.104 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.465 4.465 8 H 0.082 0.918 9 C 0.113 3.887 10 C -0.223 4.223 11 C -0.094 4.094 12 C -0.024 4.024 13 N -0.649 5.649 14 C 0.499 3.501 15 O -0.524 6.524 16 C -0.106 4.106 17 C -0.015 4.015 18 C -0.159 4.159 19 C 0.097 3.903 20 N -0.490 5.490 21 C 0.097 3.903 22 C -0.159 4.159 23 C -0.073 4.073 24 C -0.174 4.174 25 H 0.284 0.716 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.394 0.606 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.132 0.868 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.132 0.868 35 H 0.100 0.900 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.580 -12.213 7.744 14.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.493 4.493 8 H 0.100 0.900 9 C 0.110 3.890 10 C -0.243 4.243 11 C -0.114 4.114 12 C -0.115 4.115 13 N -0.292 5.292 14 C 0.284 3.716 15 O -0.400 6.400 16 C -0.146 4.146 17 C -0.023 4.023 18 C -0.179 4.179 19 C -0.060 4.060 20 N -0.200 5.200 21 C -0.060 4.060 22 C -0.179 4.179 23 C -0.093 4.093 24 C -0.194 4.194 25 H 0.095 0.905 26 H 0.113 0.887 27 H 0.108 0.892 28 H 0.227 0.773 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.150 0.850 32 H 0.171 0.829 33 H 0.171 0.829 34 H 0.150 0.850 35 H 0.118 0.882 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.806 -11.148 9.065 14.864 hybrid contribution 0.360 0.202 -1.313 1.376 sum -3.446 -10.947 7.753 13.850 Atomic orbital electron populations 1.69942 1.08131 1.29982 1.30821 1.25951 0.94366 1.01586 0.91552 0.86502 0.81540 0.80836 0.79171 1.19443 1.19824 1.18068 1.19508 1.05347 0.93835 1.30589 0.90004 1.17595 0.89905 0.91787 0.89726 1.20470 1.07048 0.92323 1.04476 1.20047 0.96347 0.97274 0.97702 1.17048 1.04907 0.85871 1.03716 1.42911 1.62813 1.15675 1.07811 1.20276 0.79431 0.89584 0.82273 1.90738 1.51551 1.31826 1.65890 1.20721 1.03949 0.97985 0.91914 1.19706 0.93535 0.94783 0.94314 1.21997 0.99581 1.01884 0.94402 1.22684 0.94407 0.94537 0.94329 1.67635 1.00854 1.12330 1.39147 1.22684 0.97731 0.95875 0.89663 1.21996 0.98077 1.00366 0.97456 1.20377 0.98875 0.91457 0.98609 1.20712 1.02747 0.96970 0.98924 0.90513 0.88652 0.89247 0.77304 0.87836 0.87777 0.84962 0.82875 0.82871 0.84958 0.88156 0.87619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.64 11.77 55.55 0.65 -18.99 16 2 C 0.09 2.18 4.77 -17.34 -0.08 2.10 16 3 Si 0.90 18.38 29.66 -169.99 -5.04 13.33 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.47 -12.26 8.94 -37.85 -0.34 -12.60 16 8 H 0.08 2.07 8.02 -52.48 -0.42 1.64 16 9 C 0.11 3.01 5.57 -106.80 -0.60 2.41 16 10 C -0.22 -5.39 9.74 -39.26 -0.38 -5.77 16 11 C -0.09 -2.03 9.90 -39.79 -0.39 -2.43 16 12 C -0.02 -0.52 6.25 -83.57 -0.52 -1.04 16 13 N -0.65 -10.91 5.30 -9.74 -0.05 -10.96 16 14 C 0.50 8.28 7.63 -10.99 -0.08 8.20 16 15 O -0.52 -11.28 13.66 5.55 0.08 -11.21 16 16 C -0.11 -1.16 5.88 -29.03 -0.17 -1.33 16 17 C -0.01 -0.18 4.41 -104.31 -0.46 -0.64 16 18 C -0.16 -1.91 9.82 -39.44 -0.39 -2.30 16 19 C 0.10 1.18 11.18 -17.55 -0.20 0.98 16 20 N -0.49 -6.62 10.36 -13.25 -0.14 -6.76 16 21 C 0.10 1.18 11.18 -17.55 -0.20 0.98 16 22 C -0.16 -1.91 9.82 -39.44 -0.39 -2.30 16 23 C -0.07 -1.82 8.59 -39.79 -0.34 -2.16 16 24 C -0.17 -4.64 8.74 -39.26 -0.34 -4.99 16 25 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 26 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 27 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 28 H 0.39 4.97 8.82 -40.82 -0.36 4.61 16 29 H 0.10 0.86 8.10 -51.93 -0.42 0.44 16 30 H 0.10 0.87 8.10 -51.93 -0.42 0.45 16 31 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.15 1.42 8.06 -52.49 -0.42 0.99 16 33 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.10 2.51 6.46 -52.49 -0.34 2.17 16 36 H 0.11 2.92 6.52 -52.49 -0.34 2.57 16 LS Contribution 317.16 15.07 4.78 4.78 Total: -1.00 -32.23 317.16 -8.58 -40.81 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -3.97 Total: 9.89 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: -4.88 Total: -20.89 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.47 Total: -36.71 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.08 Total: -11.21 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.04 Total: 13.33 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.23 -8.58 -40.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120978521.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.031 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds