Wall clock time and date at job start Tue Mar 31 2020 05:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86806 * 119.99913 * 2 1 4 4 H 1.48497 * 109.47151 * 274.98803 * 3 2 1 5 5 H 1.48504 * 109.46828 * 34.98795 * 3 2 1 6 6 H 1.48497 * 109.47037 * 154.98850 * 3 2 1 7 7 C 1.39902 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99907 * 147.61033 * 7 2 1 9 9 C 1.41156 * 120.00060 * 327.60531 * 7 2 1 10 10 C 1.40866 * 120.16213 * 158.01295 * 9 7 2 11 11 C 1.36372 * 119.82823 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.16841 * 0.02562 * 11 10 9 13 13 N 1.39240 * 119.83147 * 179.97438 * 12 11 10 14 14 C 1.34775 * 119.99659 * 142.47828 * 13 12 11 15 15 O 1.21283 * 119.99887 * 3.01296 * 14 13 12 16 16 C 1.50701 * 119.99909 * 183.00678 * 14 13 12 17 17 C 1.50702 * 109.46999 * 180.02562 * 16 14 13 18 18 C 1.38658 * 120.78565 * 269.72044 * 17 16 14 19 19 C 1.38204 * 119.15838 * 179.80178 * 18 17 16 20 20 N 1.31873 * 120.76402 * 0.48186 * 19 18 17 21 21 C 1.31867 * 121.72643 * 359.74500 * 20 19 18 22 22 C 1.38203 * 120.76550 * 0.02562 * 21 20 19 23 23 C 1.39482 * 120.33358 * 0.25650 * 12 11 10 24 24 C 1.36373 * 120.16598 * 359.44163 * 23 12 11 25 25 H 0.97004 * 120.00041 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.08499 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.91313 * 180.02562 * 11 10 9 28 28 H 0.96997 * 120.00300 * 322.20308 * 13 12 11 29 29 H 1.08998 * 109.47226 * 299.99967 * 16 14 13 30 30 H 1.09001 * 109.47014 * 60.00398 * 16 14 13 31 31 H 1.07995 * 120.42127 * 0.02562 * 18 17 16 32 32 H 1.08000 * 119.61899 * 180.20740 * 19 18 17 33 33 H 1.07998 * 119.61522 * 179.97438 * 21 20 19 34 34 H 1.07995 * 120.41571 * 179.97438 * 22 21 20 35 35 H 1.07993 * 119.91368 * 179.72580 * 23 12 11 36 36 H 1.08001 * 120.08816 * 180.25207 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.3848 2.1074 -1.3947 5 1 1.4968 2.6200 0.8028 6 1 3.5890 1.4121 0.5919 7 6 2.0082 -1.2116 -0.0005 8 1 2.9623 -1.2841 -0.5016 9 6 1.4672 -2.3392 0.6539 10 6 1.8863 -3.6351 0.2941 11 6 1.3587 -4.7197 0.9305 12 6 0.4061 -4.5484 1.9348 13 7 -0.1283 -5.6608 2.5796 14 6 -0.3939 -5.6113 3.9000 15 8 -0.2190 -4.5810 4.5155 16 6 -0.9086 -6.8361 4.6115 17 6 -1.1240 -6.5172 6.0685 18 6 -0.1082 -6.7043 6.9937 19 6 -0.3412 -6.3970 8.3208 20 7 -1.5150 -5.9402 8.7114 21 6 -2.5049 -5.7543 7.8603 22 6 -2.3443 -6.0352 6.5167 23 6 -0.0181 -3.2687 2.2925 24 6 0.5049 -2.1742 1.6693 25 1 -0.4850 0.8401 0.0004 26 1 2.6229 -3.7693 -0.4842 27 1 1.6794 -5.7139 0.6560 28 1 -0.3131 -6.4701 2.0777 29 1 -1.8530 -7.1461 4.1643 30 1 -0.1809 -7.6424 4.5194 31 1 0.8538 -7.0820 6.6806 32 1 0.4458 -6.5367 9.0471 33 1 -3.4525 -5.3789 8.2176 34 1 -3.1589 -5.8813 5.8247 35 1 -0.7593 -3.1442 3.0680 36 1 0.1785 -1.1838 1.9501 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120978521.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:01 Heat of formation + Delta-G solvation = -3.778141 kcal Electronic energy + Delta-G solvation = -20345.898450 eV Core-core repulsion = 17179.543233 eV Total energy + Delta-G solvation = -3166.355217 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.49096 -40.65066 -39.01270 -36.22331 -34.87343 -34.69539 -32.09629 -31.47503 -31.15348 -29.42303 -26.67125 -24.38387 -23.86723 -23.18798 -22.48856 -21.04199 -19.29646 -18.56689 -17.83636 -17.42831 -17.34119 -17.01528 -16.46826 -16.09007 -15.76693 -15.29526 -14.96230 -14.65475 -14.51853 -14.36603 -13.98439 -13.82876 -13.62885 -13.33014 -13.11454 -12.93250 -12.77868 -12.38640 -12.30237 -11.85911 -11.49967 -11.10821 -10.86288 -10.67851 -10.45070 -10.38748 -10.04380 -9.46799 -9.02619 -8.70646 -6.24539 0.24649 0.27178 0.83396 1.13451 1.34451 1.41772 1.52652 1.82744 2.16683 2.40336 2.64771 2.95847 3.52274 3.63389 3.70232 3.86020 4.06436 4.20040 4.26076 4.43139 4.46022 4.49515 4.55898 4.76693 4.90761 4.93939 5.04279 5.08924 5.18902 5.26751 5.38075 5.44635 5.65586 5.80724 5.86750 6.07489 6.08474 6.32669 6.63990 6.77092 6.88477 6.99951 7.04261 7.47545 8.18994 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.025200 B = 0.003472 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.856455 B = 8061.971272 C = 8654.916551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.048 3.952 3 Si 0.970 3.030 4 H -0.255 1.255 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.504 4.504 8 H 0.082 0.918 9 C 0.081 3.919 10 C -0.234 4.234 11 C -0.088 4.088 12 C -0.007 4.007 13 N -0.641 5.641 14 C 0.498 3.502 15 O -0.578 6.578 16 C -0.089 4.089 17 C -0.033 4.033 18 C -0.167 4.167 19 C 0.083 3.917 20 N -0.516 5.516 21 C 0.083 3.917 22 C -0.168 4.168 23 C -0.088 4.088 24 C -0.201 4.201 25 H 0.292 0.708 26 H 0.108 0.892 27 H 0.136 0.864 28 H 0.419 0.581 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.151 0.849 32 H 0.175 0.825 33 H 0.174 0.826 34 H 0.149 0.851 35 H 0.090 0.910 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.291 -14.314 7.596 16.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.171 4.171 3 Si 0.790 3.210 4 H -0.179 1.179 5 H -0.193 1.193 6 H -0.183 1.183 7 C -0.532 4.532 8 H 0.100 0.900 9 C 0.079 3.921 10 C -0.254 4.254 11 C -0.108 4.108 12 C -0.101 4.101 13 N -0.287 5.287 14 C 0.287 3.713 15 O -0.457 6.457 16 C -0.128 4.128 17 C -0.042 4.042 18 C -0.186 4.186 19 C -0.073 4.073 20 N -0.226 5.226 21 C -0.073 4.073 22 C -0.188 4.188 23 C -0.108 4.108 24 C -0.221 4.221 25 H 0.102 0.898 26 H 0.126 0.874 27 H 0.153 0.847 28 H 0.257 0.743 29 H 0.157 0.843 30 H 0.159 0.841 31 H 0.169 0.831 32 H 0.192 0.808 33 H 0.191 0.809 34 H 0.167 0.833 35 H 0.108 0.892 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.535 -13.309 8.901 16.397 hybrid contribution 0.206 0.692 -1.176 1.381 sum -3.328 -12.617 7.725 15.163 Atomic orbital electron populations 1.69963 1.09618 1.31292 1.31735 1.26786 0.95021 1.04752 0.90577 0.85392 0.79657 0.76172 0.79782 1.17887 1.19253 1.18259 1.19755 1.05895 0.95233 1.32308 0.89960 1.17915 0.90626 0.93341 0.90237 1.20761 1.07443 0.92172 1.05051 1.20425 0.95144 0.98710 0.96538 1.17131 1.03672 0.86412 1.02848 1.42836 1.62441 1.15073 1.08307 1.21282 0.77675 0.90587 0.81797 1.90734 1.53509 1.34493 1.66949 1.20733 1.06386 0.95561 0.90161 1.20014 0.93792 0.95100 0.95270 1.22293 1.00339 1.01635 0.94383 1.23124 0.94639 0.94291 0.95261 1.67658 1.01688 1.13185 1.40046 1.23105 0.98396 0.95844 0.89994 1.22283 0.98766 0.99996 0.97754 1.20433 0.99107 0.92734 0.98555 1.20614 1.04445 0.96585 1.00416 0.89757 0.87378 0.84662 0.74301 0.84346 0.84130 0.83147 0.80801 0.80905 0.83331 0.89164 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -42.72 11.77 21.82 0.26 -42.46 16 2 C 0.05 2.44 4.77 85.24 0.41 2.85 16 3 Si 0.97 38.48 29.66 68.60 2.03 40.51 16 4 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 5 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 6 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.50 -27.48 8.94 23.39 0.21 -27.27 16 8 H 0.08 4.28 8.02 -2.91 -0.02 4.26 16 9 C 0.08 4.48 5.57 -21.28 -0.12 4.36 16 10 C -0.23 -11.22 9.74 22.48 0.22 -11.00 16 11 C -0.09 -3.63 9.90 22.13 0.22 -3.41 16 12 C -0.01 -0.31 6.25 38.56 0.24 -0.07 16 13 N -0.64 -19.52 5.30 -303.11 -1.61 -21.13 16 14 C 0.50 15.24 7.63 87.66 0.67 15.91 16 15 O -0.58 -24.51 13.66 -3.04 -0.04 -24.56 16 16 C -0.09 -1.59 5.88 29.10 0.17 -1.41 16 17 C -0.03 -0.74 4.41 -19.67 -0.09 -0.83 16 18 C -0.17 -3.67 9.82 22.36 0.22 -3.45 16 19 C 0.08 1.92 11.18 84.68 0.95 2.86 16 20 N -0.52 -13.56 10.36 -195.84 -2.03 -15.59 16 21 C 0.08 1.93 11.18 84.68 0.95 2.88 16 22 C -0.17 -3.76 9.82 22.36 0.22 -3.54 16 23 C -0.09 -4.48 8.59 22.13 0.19 -4.29 16 24 C -0.20 -11.22 8.74 22.48 0.20 -11.02 16 25 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 26 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 27 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 28 H 0.42 8.62 8.82 -92.71 -0.82 7.80 16 29 H 0.14 1.57 8.10 -2.39 -0.02 1.55 16 30 H 0.14 1.55 8.10 -2.39 -0.02 1.53 16 31 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 32 H 0.17 3.00 8.06 -2.91 -0.02 2.97 16 33 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 35 H 0.09 4.68 6.46 -2.91 -0.02 4.66 16 36 H 0.08 4.79 6.52 -2.91 -0.02 4.77 16 Total: -1.00 -74.02 317.16 3.56 -70.47 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: 0.29 Total: 30.21 kcal Atomic # 6 Polarization: -42.09 SS G_CDS: 4.65 Total: -37.44 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -3.38 Total: -79.19 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.04 Total: -24.56 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Total: -74.02 3.56 -70.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120978521.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.688 kcal (2) G-P(sol) polarization free energy of solvation -74.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds