Wall clock time and date at job start Tue Mar 31 2020 05:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86808 * 119.99680 * 2 1 4 4 H 1.48494 * 109.47188 * 239.99968 * 3 2 1 5 5 H 1.48500 * 109.47109 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46812 * 120.00362 * 3 2 1 7 7 C 1.37878 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00090 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99991 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47100 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47209 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47183 * 179.97438 * 11 10 9 13 13 C 1.34774 * 119.99977 * 180.02562 * 12 11 10 14 14 O 1.21582 * 120.00014 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00180 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00347 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.47378 * 179.97438 * 16 15 13 18 18 C 1.50706 * 109.47116 * 179.97438 * 17 16 15 19 19 C 1.33391 * 125.19937 * 90.00083 * 18 17 16 20 20 C 1.38423 * 114.92045 * 179.97438 * 19 18 17 21 21 C 1.33390 * 114.91979 * 359.97438 * 20 19 18 22 22 S 1.75878 * 125.20693 * 269.69344 * 18 17 16 23 23 H 0.97001 * 120.00466 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46856 * 59.99983 * 9 7 2 25 25 H 1.09001 * 109.47132 * 300.00235 * 9 7 2 26 26 H 1.09008 * 109.46975 * 60.00009 * 10 9 7 27 27 H 1.08993 * 109.47314 * 300.00293 * 10 9 7 28 28 H 1.09006 * 109.46538 * 60.00083 * 11 10 9 29 29 H 1.08993 * 109.47328 * 300.00414 * 11 10 9 30 30 H 0.97001 * 120.00381 * 0.02562 * 12 11 10 31 31 H 0.97001 * 120.00169 * 359.97438 * 15 13 12 32 32 H 1.09000 * 109.47518 * 59.99389 * 16 15 13 33 33 H 1.09008 * 109.47096 * 300.00066 * 16 15 13 34 34 H 1.09000 * 109.46884 * 60.00202 * 17 16 15 35 35 H 1.09000 * 109.46955 * 299.99518 * 17 16 15 36 36 H 1.07995 * 122.54106 * 359.95411 * 19 18 17 37 37 H 1.08001 * 122.53959 * 180.02562 * 20 19 18 38 38 H 1.07998 * 125.20163 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6966 -1.2124 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 0.0001 12 7 2.4324 -6.1005 -0.0005 13 6 1.9832 -7.3712 -0.0006 14 8 0.7879 -7.5934 -0.0007 15 7 2.8591 -8.3956 -0.0007 16 6 2.3708 -9.7768 -0.0013 17 6 3.5609 -10.7384 -0.0019 18 6 3.0586 -12.1593 -0.0020 19 6 2.8019 -12.8841 -1.0920 20 6 2.3486 -14.1685 -0.8451 21 6 2.2376 -14.4869 0.4455 22 16 2.7283 -13.1181 1.4350 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8720 -3.6042 0.8895 27 1 2.8720 -3.6042 -0.8904 28 1 0.8534 -5.0450 -0.8897 29 1 0.8540 -5.0446 0.8902 30 1 3.3861 -5.9233 -0.0008 31 1 3.8127 -8.2184 -0.0010 32 1 1.7655 -9.9479 -0.8915 33 1 1.7649 -9.9485 0.8884 34 1 4.1664 -10.5676 0.8882 35 1 4.1663 -10.5667 -0.8919 36 1 2.9373 -12.4980 -2.0915 37 1 2.1041 -14.8606 -1.6373 38 1 1.9015 -15.4406 0.8247 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171726792.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:04 Heat of formation + Delta-G solvation = -19.800247 kcal Electronic energy + Delta-G solvation = -18230.500361 eV Core-core repulsion = 15198.894325 eV Total energy + Delta-G solvation = -3031.606036 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.82796 -38.34797 -35.94135 -35.00925 -33.32697 -32.36304 -30.96897 -28.16269 -26.51689 -24.52215 -23.06180 -22.35952 -20.86269 -20.39552 -19.61036 -18.19273 -17.23817 -16.57220 -16.06004 -15.87887 -15.63739 -14.78754 -14.59582 -14.32953 -13.96210 -13.84890 -13.37523 -13.17344 -12.76048 -12.60648 -12.26568 -12.16467 -11.79431 -11.78474 -11.49535 -11.05827 -10.87405 -10.70543 -10.61194 -10.11231 -9.84070 -9.43161 -9.21894 -9.12644 -9.02861 -8.81979 -8.58836 -8.35807 -6.00422 -4.03624 0.61641 1.26723 1.64653 2.37141 2.82812 3.32681 3.37470 3.38617 3.39337 4.25919 4.45162 4.55241 4.63675 4.66612 4.74528 5.04503 5.21182 5.29012 5.35100 5.54768 5.65746 5.76021 5.79183 5.83536 5.92301 6.12202 6.20227 6.40792 6.54683 6.64187 6.81636 7.03909 7.07715 7.65051 7.78300 7.98390 8.15790 8.39260 8.76427 9.02849 9.60311 11.10791 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.064752 B = 0.001985 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.316604 B =14102.487953 C =14187.506490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.741 5.741 13 C 0.700 3.300 14 O -0.592 6.592 15 N -0.753 5.753 16 C 0.145 3.855 17 C -0.060 4.060 18 C -0.172 4.172 19 C -0.135 4.135 20 C -0.134 4.134 21 C -0.216 4.216 22 S 0.102 5.898 23 H 0.262 0.738 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.394 0.606 31 H 0.395 0.605 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.615 -28.625 0.008 30.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.011 3.989 12 N -0.396 5.396 13 C 0.399 3.601 14 O -0.470 6.470 15 N -0.410 5.410 16 C 0.020 3.980 17 C -0.100 4.100 18 C -0.290 4.290 19 C -0.166 4.166 20 C -0.165 4.165 21 C -0.351 4.351 22 S 0.366 5.634 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.227 0.773 31 H 0.228 0.772 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.159 0.841 37 H 0.158 0.842 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 8.399 -28.452 1.572 29.708 hybrid contribution 1.194 0.728 -1.516 2.062 sum 9.593 -27.725 0.057 29.337 Atomic orbital electron populations 1.69952 1.06047 1.26791 1.50447 1.25033 0.94866 0.99289 0.95306 0.86638 0.79549 0.83114 0.78554 1.20267 1.21275 1.20273 1.21168 0.92942 0.90962 1.51057 0.92710 1.19026 0.93866 0.90794 0.97707 1.21889 0.99785 0.93336 1.00809 1.21514 0.91302 0.84135 1.01900 1.45382 1.10447 1.04429 1.79315 1.15997 0.85269 0.80771 0.78021 1.90927 1.14157 1.84124 1.57781 1.45077 1.08969 1.05229 1.81752 1.21110 0.95236 0.78717 1.02946 1.20312 0.97622 0.87930 1.04108 1.24250 1.08866 0.99926 0.95946 1.20179 1.02772 0.94182 0.99448 1.20187 1.02713 0.97077 0.96474 1.25649 1.09638 1.02914 0.96912 1.84402 1.64264 1.05252 1.09513 0.92870 0.96227 0.96240 0.92777 0.92769 0.91957 0.91951 0.77321 0.77187 0.91286 0.91478 0.89987 0.89161 0.84133 0.84249 0.81917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.13 2.43 5.67 -4.04 -0.02 2.41 16 12 N -0.74 -10.81 5.56 -65.23 -0.36 -11.17 16 13 C 0.70 10.83 8.57 -86.92 -0.74 10.08 16 14 O -0.59 -11.93 16.34 5.29 0.09 -11.84 16 15 N -0.75 -8.00 5.56 -65.23 -0.36 -8.36 16 16 C 0.15 1.43 5.66 -4.04 -0.02 1.41 16 17 C -0.06 -0.41 5.82 -27.88 -0.16 -0.57 16 18 C -0.17 -1.34 5.76 -36.00 -0.21 -1.55 16 19 C -0.14 -1.02 10.05 -41.21 -0.41 -1.43 16 20 C -0.13 -0.94 10.18 -41.21 -0.42 -1.36 16 21 C -0.22 -1.50 11.23 29.04 0.33 -1.17 16 22 S 0.10 0.79 23.33 -107.50 -2.51 -1.72 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 1.02 8.14 -51.92 -0.42 0.59 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.39 4.47 8.49 -40.82 -0.35 4.12 16 31 H 0.39 2.86 8.49 -40.82 -0.35 2.52 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.16 0.79 8.06 -52.49 -0.42 0.36 16 LS Contribution 341.30 15.07 5.14 5.14 Total: -1.00 -33.96 341.30 -10.38 -44.34 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.73 Total: 0.93 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -2.36 Total: -7.65 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.01 Total: -45.70 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.51 Total: -1.72 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.96 -10.38 -44.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171726792.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.538 kcal (2) G-P(sol) polarization free energy of solvation -33.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds