Wall clock time and date at job start Tue Mar 31 2020 05:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86808 * 119.99771 * 2 1 4 4 H 1.48497 * 109.46859 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46667 * 300.00129 * 3 2 1 6 6 H 1.48500 * 109.47053 * 60.00092 * 3 2 1 7 7 C 1.40042 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99870 * 179.97438 * 7 2 1 9 9 C 1.46365 * 120.00229 * 359.97438 * 7 2 1 10 10 O 1.21687 * 120.00037 * 359.97438 * 9 7 2 11 11 N 1.34782 * 120.00357 * 179.97438 * 9 7 2 12 12 N 1.40094 * 120.00195 * 180.02562 * 11 9 7 13 13 C 1.39712 * 119.99940 * 74.99873 * 12 11 9 14 14 C 1.38932 * 120.07444 * 172.10108 * 13 12 11 15 15 C 1.38103 * 119.92424 * 179.76648 * 14 13 12 16 16 C 1.38297 * 120.07099 * 0.51645 * 15 14 13 17 17 C 1.38289 * 120.15288 * 359.73956 * 16 15 14 18 18 C 1.38097 * 120.07799 * 359.97438 * 17 16 15 19 19 C 1.39709 * 120.00183 * 254.99800 * 12 11 9 20 20 C 1.38934 * 120.07781 * 129.20257 * 19 12 11 21 21 C 1.38096 * 119.92679 * 179.77033 * 20 19 12 22 22 C 1.38295 * 120.07109 * 0.51260 * 21 20 19 23 23 C 1.38286 * 120.15598 * 359.74277 * 22 21 20 24 24 C 1.38107 * 120.07447 * 359.97438 * 23 22 21 25 25 H 0.97004 * 120.00202 * 359.97438 * 1 2 3 26 26 H 0.96996 * 119.99496 * 0.02562 * 11 9 7 27 27 H 1.07997 * 120.04027 * 0.02562 * 14 13 12 28 28 H 1.07992 * 119.96529 * 180.25617 * 15 14 13 29 29 H 1.08002 * 119.91741 * 179.71983 * 16 15 14 30 30 H 1.07998 * 119.95777 * 179.97438 * 17 16 15 31 31 H 1.07996 * 120.03546 * 179.97438 * 18 17 16 32 32 H 1.08004 * 120.03669 * 0.02836 * 20 19 12 33 33 H 1.07993 * 119.96442 * 180.25439 * 21 20 19 34 34 H 1.08004 * 119.92010 * 179.72007 * 22 21 20 35 35 H 1.08000 * 119.96442 * 179.97438 * 23 22 21 36 36 H 1.08004 * 120.03569 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3465 -0.0006 5 1 1.8818 2.3965 -1.2125 6 1 1.8819 2.3965 1.2125 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0001 9 6 1.2752 -2.4804 0.0017 10 8 0.0583 -2.4804 0.0026 11 7 1.9491 -3.6476 0.0017 12 7 1.2486 -4.8609 0.0022 13 6 0.6277 -5.3095 -1.1662 14 6 0.0745 -6.5830 -1.2157 15 6 -0.5428 -7.0215 -2.3706 16 6 -0.6013 -6.1985 -3.4805 17 6 -0.0470 -4.9324 -3.4363 18 6 0.5666 -4.4853 -2.2828 19 6 1.1710 -5.6222 1.1711 20 6 -0.0613 -6.0725 1.6282 21 6 -0.1339 -6.8288 2.7814 22 6 1.0172 -7.1292 3.4867 23 6 2.2448 -6.6782 3.0375 24 6 2.3253 -5.9263 1.8818 25 1 -0.4851 0.8401 0.0004 26 1 2.9190 -3.6476 0.0013 27 1 0.1234 -7.2278 -0.3507 28 1 -0.9767 -8.0097 -2.4085 29 1 -1.0807 -6.5457 -4.3839 30 1 -0.0940 -4.2924 -4.3051 31 1 0.9996 -3.4965 -2.2492 32 1 -0.9610 -5.8348 1.0801 33 1 -1.0910 -7.1826 3.1351 34 1 0.9571 -7.7171 4.3907 35 1 3.1417 -6.9142 3.5909 36 1 3.2843 -5.5740 1.5318 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185277451.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:41 Heat of formation + Delta-G solvation = 62.269531 kcal Electronic energy + Delta-G solvation = -21452.994691 eV Core-core repulsion = 18289.503516 eV Total energy + Delta-G solvation = -3163.491175 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.91628 -38.21840 -37.23660 -35.04310 -32.62442 -31.60194 -30.67423 -30.34460 -29.87132 -27.51178 -25.86383 -22.65829 -22.59493 -21.64715 -21.10982 -19.68552 -17.79524 -17.35269 -16.87151 -15.98007 -15.51153 -15.31748 -14.69730 -14.25576 -14.06156 -13.85106 -13.65772 -13.21281 -13.04899 -12.68841 -12.44210 -12.28174 -12.16532 -11.52381 -11.33949 -11.13522 -11.06033 -10.94655 -10.67190 -10.48382 -10.31976 -10.05709 -9.02466 -8.70899 -8.55714 -8.43139 -8.05075 -7.87683 -6.75518 -6.31935 -4.83790 1.45746 1.62252 1.92705 2.14932 2.83325 3.05299 3.14798 3.19250 3.99492 4.04165 4.40909 4.42556 5.02676 5.15284 5.18784 5.34706 5.39271 5.50079 5.57493 5.64695 5.66864 5.80239 5.89574 5.94801 6.15783 6.23703 6.30938 6.54729 6.60539 6.72544 6.77154 6.90728 6.95765 7.08439 7.12800 7.28352 7.40009 7.60863 8.00179 8.10765 8.63135 8.85038 9.21748 10.43855 10.60320 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013808 B = 0.006426 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.306699 B = 4356.160158 C = 5831.441931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.088 3.912 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.535 4.535 8 H 0.073 0.927 9 C 0.551 3.449 10 O -0.554 6.554 11 N -0.554 5.554 12 N -0.372 5.372 13 C 0.223 3.777 14 C -0.192 4.192 15 C -0.087 4.087 16 C -0.179 4.179 17 C -0.084 4.084 18 C -0.149 4.149 19 C 0.186 3.814 20 C -0.131 4.131 21 C -0.103 4.103 22 C -0.145 4.145 23 C -0.103 4.103 24 C -0.139 4.139 25 H 0.271 0.729 26 H 0.392 0.608 27 H 0.121 0.879 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.091 -12.054 0.556 12.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.133 4.133 3 Si 0.738 3.262 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.574 4.574 8 H 0.091 0.909 9 C 0.355 3.645 10 O -0.432 6.432 11 N -0.305 5.305 12 N -0.162 5.162 13 C 0.124 3.876 14 C -0.215 4.215 15 C -0.106 4.106 16 C -0.198 4.198 17 C -0.103 4.103 18 C -0.171 4.171 19 C 0.091 3.909 20 C -0.153 4.153 21 C -0.122 4.122 22 C -0.164 4.164 23 C -0.122 4.122 24 C -0.160 4.160 25 H 0.082 0.918 26 H 0.231 0.769 27 H 0.139 0.861 28 H 0.134 0.866 29 H 0.130 0.870 30 H 0.135 0.865 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.088 -11.801 0.617 12.000 hybrid contribution 0.853 0.974 0.107 1.299 sum 2.941 -10.827 0.723 11.243 Atomic orbital electron populations 1.70022 1.07079 1.27631 1.34268 1.25696 0.94714 1.00334 0.92537 0.86208 0.80409 0.81206 0.78369 1.18613 1.19987 1.20027 1.20706 0.93757 0.87962 1.54953 0.90871 1.18836 0.87931 0.80939 0.76774 1.90661 1.13682 1.85124 1.53719 1.46198 1.05918 0.94001 1.84364 1.42578 1.54046 1.14189 1.05400 1.17881 0.92283 0.91982 0.85470 1.20727 1.05994 0.94997 0.99803 1.20723 0.98289 0.98954 0.92588 1.20837 1.04996 0.95358 0.98658 1.20880 0.96672 0.95562 0.97204 1.20837 1.03734 1.00084 0.92443 1.17742 0.93057 0.92719 0.87388 1.21294 0.96872 1.00278 0.96814 1.20951 0.98422 0.98197 0.94629 1.21025 0.92727 1.02228 1.00384 1.20905 0.97717 0.97789 0.95805 1.21065 0.97385 1.00254 0.97267 0.91816 0.76924 0.86097 0.86607 0.86955 0.86507 0.85288 0.85588 0.86023 0.86366 0.86110 0.86144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.18 11.83 55.55 0.66 -21.52 16 2 C 0.09 2.36 5.50 -17.37 -0.10 2.27 16 3 Si 0.91 19.46 29.56 -169.99 -5.02 14.44 16 4 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.54 -14.45 9.54 -35.64 -0.34 -14.79 16 8 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 9 C 0.55 15.16 6.30 -12.99 -0.08 15.08 16 10 O -0.55 -17.53 14.74 5.20 0.08 -17.45 16 11 N -0.55 -12.51 5.13 30.19 0.15 -12.36 16 12 N -0.37 -7.84 3.02 -8.41 -0.03 -7.87 16 13 C 0.22 4.59 6.18 -83.76 -0.52 4.08 16 14 C -0.19 -3.38 8.43 -39.37 -0.33 -3.71 16 15 C -0.09 -1.34 10.04 -39.61 -0.40 -1.74 16 16 C -0.18 -2.80 10.04 -39.54 -0.40 -3.20 16 17 C -0.08 -1.50 10.04 -39.61 -0.40 -1.90 16 18 C -0.15 -3.15 8.90 -39.38 -0.35 -3.50 16 19 C 0.19 3.49 5.20 -83.76 -0.44 3.06 16 20 C -0.13 -2.31 7.64 -39.38 -0.30 -2.61 16 21 C -0.10 -1.48 10.04 -39.61 -0.40 -1.87 16 22 C -0.14 -1.88 10.04 -39.54 -0.40 -2.27 16 23 C -0.10 -1.40 10.04 -39.61 -0.40 -1.80 16 24 C -0.14 -2.23 9.76 -39.38 -0.38 -2.62 16 25 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 26 H 0.39 7.71 8.81 -182.61 -1.61 6.10 16 27 H 0.12 1.97 5.87 -52.49 -0.31 1.66 16 28 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 31 H 0.13 3.07 6.34 -52.49 -0.33 2.74 16 32 H 0.13 2.37 7.48 -52.48 -0.39 1.98 16 33 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 35 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.12 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 314.33 15.07 4.74 4.74 Total: -1.00 -33.35 314.33 -9.80 -43.15 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -5.15 Total: 12.41 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -5.22 Total: -15.53 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.79 Total: -41.75 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: 0.08 Total: -17.45 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.35 -9.80 -43.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185277451.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.420 kcal (2) G-P(sol) polarization free energy of solvation -33.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds