Wall clock time and date at job start Tue Mar 31 2020 05:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86797 * 120.00518 * 2 1 4 4 H 1.48493 * 109.47611 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46822 * 300.00408 * 3 2 1 6 6 H 1.48507 * 109.46975 * 59.99947 * 3 2 1 7 7 C 1.39908 * 119.99716 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99983 * 195.54746 * 7 2 1 9 9 C 1.41122 * 119.99835 * 15.55288 * 7 2 1 10 10 C 1.40880 * 120.16358 * 24.70552 * 9 7 2 11 11 C 1.36343 * 119.83647 * 180.02562 * 10 9 7 12 12 C 1.39539 * 120.16349 * 0.25308 * 11 10 9 13 13 N 1.39040 * 119.83843 * 179.72884 * 12 11 10 14 14 C 1.34776 * 119.99579 * 215.94997 * 13 12 11 15 15 O 1.21797 * 120.00535 * 355.47954 * 14 13 12 16 16 C 1.41435 * 119.99688 * 175.48506 * 14 13 12 17 17 C 1.35674 * 119.99675 * 179.97438 * 16 14 13 18 18 C 1.41643 * 119.99994 * 179.97438 * 17 16 14 19 19 C 1.38314 * 126.26299 * 179.68567 * 18 17 16 20 20 C 1.39769 * 107.07510 * 179.91002 * 19 18 17 21 21 C 1.35514 * 107.91480 * 0.36335 * 20 19 18 22 22 N 1.35755 * 108.91356 * 359.77166 * 21 20 19 23 23 H 0.97003 * 125.68970 * 179.97438 * 22 21 20 24 24 C 1.39541 * 120.32145 * 359.48737 * 12 11 10 25 25 C 1.36351 * 120.16415 * 0.51171 * 24 12 11 26 26 H 0.96996 * 119.99576 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.08276 * 359.97438 * 10 9 7 28 28 H 1.07996 * 119.91893 * 179.97438 * 11 10 9 29 29 H 0.96997 * 120.00297 * 35.94913 * 13 12 11 30 30 H 1.07993 * 119.99968 * 359.97438 * 16 14 13 31 31 H 1.07999 * 120.00460 * 359.97438 * 17 16 14 32 32 H 1.07997 * 126.45820 * 0.02562 * 19 18 17 33 33 H 1.08010 * 126.04123 * 180.14354 * 20 19 18 34 34 H 1.08006 * 125.53947 * 179.78144 * 21 20 19 35 35 H 1.07997 * 119.91559 * 180.26293 * 24 12 11 36 36 H 1.07996 * 120.08242 * 179.72087 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2429 1.6176 0.0000 4 1 3.7028 1.3463 -0.0006 5 1 1.8841 2.3964 -1.2125 6 1 1.8841 2.3964 1.2126 7 6 2.0082 -1.2117 0.0005 8 1 3.0586 -1.2287 0.2512 9 6 1.3413 -2.4115 -0.3266 10 6 0.1842 -2.3820 -1.1298 11 6 -0.4552 -3.5452 -1.4414 12 6 0.0308 -4.7624 -0.9624 13 7 -0.6298 -5.9440 -1.2797 14 6 -0.7008 -6.9402 -0.3746 15 8 -0.1170 -6.8390 0.6895 16 6 -1.4531 -8.1032 -0.6607 17 6 -1.5240 -9.1062 0.2501 18 6 -2.2779 -10.2707 -0.0361 19 6 -2.4330 -11.3686 0.7908 20 6 -3.2527 -12.2778 0.1162 21 6 -3.5715 -11.7394 -1.0858 22 7 -2.9854 -10.5195 -1.1909 23 1 -3.0532 -9.9227 -1.9527 24 6 1.1793 -4.8000 -0.1708 25 6 1.8292 -3.6448 0.1489 26 1 -0.4849 0.8400 0.0004 27 1 -0.1958 -1.4401 -1.4971 28 1 -1.3425 -3.5240 -2.0566 29 1 -1.0396 -6.0514 -2.1522 30 1 -1.9710 -8.1928 -1.6041 31 1 -1.0058 -9.0168 1.1934 32 1 -2.0035 -11.4980 1.7731 33 1 -3.5723 -13.2410 0.4861 34 1 -4.1914 -12.2051 -1.8378 35 1 1.5521 -5.7461 0.1928 36 1 2.7154 -3.6750 0.7653 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189610063.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:10 Heat of formation + Delta-G solvation = 48.248232 kcal Electronic energy + Delta-G solvation = -19850.990090 eV Core-core repulsion = 16686.890906 eV Total energy + Delta-G solvation = -3164.099184 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.31075 -39.67747 -37.30956 -34.54417 -33.72215 -32.92999 -31.30256 -29.61836 -29.30209 -28.22210 -25.29693 -23.48141 -21.57272 -21.01834 -20.58040 -20.27219 -19.21791 -17.81320 -17.34977 -16.79474 -16.06933 -15.20775 -14.67721 -14.37291 -14.34172 -14.00365 -13.92042 -13.80554 -12.99292 -12.72342 -12.59407 -12.33567 -12.09400 -12.05717 -11.77770 -11.30542 -11.12305 -11.00918 -10.73510 -10.32921 -10.02041 -9.58095 -9.34847 -9.21573 -9.09984 -8.85721 -7.84234 -7.51741 -6.95078 -6.72562 -4.29281 0.63807 2.33302 2.67788 2.91517 2.97671 3.07131 3.11575 3.13168 3.20274 3.84394 3.92222 3.97355 4.64395 4.79397 4.93571 4.95176 5.11622 5.24124 5.52541 5.72766 5.75477 5.90451 6.14020 6.20174 6.27165 6.50042 6.68684 6.78870 6.81593 6.99530 7.05744 7.21808 7.23207 7.32053 7.62729 7.77827 7.92985 8.05858 8.30062 8.33808 8.61369 8.81940 8.89587 9.02995 10.18214 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.059175 B = 0.002627 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.056700 B =10655.507970 C =10865.597703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.072 3.928 3 Si 0.910 3.090 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.455 4.455 8 H 0.079 0.921 9 C 0.104 3.896 10 C -0.155 4.155 11 C -0.114 4.114 12 C -0.010 4.010 13 N -0.646 5.646 14 C 0.532 3.468 15 O -0.541 6.541 16 C -0.229 4.229 17 C 0.011 3.989 18 C 0.013 3.987 19 C -0.149 4.149 20 C -0.208 4.208 21 C 0.007 3.993 22 N -0.545 5.545 23 H 0.416 0.584 24 C -0.074 4.074 25 C -0.218 4.218 26 H 0.280 0.720 27 H 0.124 0.876 28 H 0.089 0.911 29 H 0.393 0.607 30 H 0.111 0.889 31 H 0.151 0.849 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.167 0.833 35 H 0.106 0.894 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.368 -16.597 -4.856 18.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.484 4.484 8 H 0.097 0.903 9 C 0.101 3.899 10 C -0.175 4.175 11 C -0.134 4.134 12 C -0.103 4.103 13 N -0.287 5.287 14 C 0.323 3.677 15 O -0.422 6.422 16 C -0.251 4.251 17 C -0.009 4.009 18 C -0.097 4.097 19 C -0.174 4.174 20 C -0.232 4.232 21 C -0.128 4.128 22 N -0.140 5.140 23 H 0.254 0.746 24 C -0.094 4.094 25 C -0.238 4.238 26 H 0.091 0.909 27 H 0.142 0.858 28 H 0.107 0.893 29 H 0.226 0.774 30 H 0.129 0.871 31 H 0.168 0.832 32 H 0.162 0.838 33 H 0.157 0.843 34 H 0.184 0.816 35 H 0.124 0.876 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.180 -16.245 -4.219 18.255 hybrid contribution -0.164 0.986 -0.860 1.319 sum -7.344 -15.259 -5.079 17.679 Atomic orbital electron populations 1.69847 1.07552 1.29036 1.35536 1.25949 0.94787 1.01412 0.92363 0.86233 0.80953 0.80847 0.78522 1.18383 1.19746 1.19984 1.19606 0.97395 0.90981 1.40424 0.90327 1.17691 0.91493 0.92195 0.88480 1.20957 0.98923 0.96408 1.01189 1.20254 0.98920 0.91886 1.02331 1.17176 0.97479 0.84003 1.11611 1.42881 1.54738 1.15129 1.15996 1.16911 0.82342 0.84006 0.84423 1.90821 1.46265 1.80486 1.24606 1.21818 1.05871 0.96406 1.00998 1.20825 0.92051 0.88739 0.99319 1.18357 1.04137 0.98175 0.89052 1.21532 1.02409 0.93400 1.00042 1.20876 1.05195 1.01539 0.95567 1.22028 1.03106 0.87154 1.00465 1.42204 1.39370 1.16461 1.15932 0.74604 1.20380 0.93311 0.97877 0.97845 1.20678 1.03430 0.92707 1.06975 0.90945 0.85825 0.89290 0.77359 0.87122 0.83157 0.83809 0.84300 0.81598 0.87575 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.62 10.82 55.55 0.60 -20.02 16 2 C 0.07 1.82 5.18 -17.33 -0.09 1.73 16 3 Si 0.91 18.71 29.59 -169.99 -5.03 13.68 16 4 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.45 -12.19 9.05 -37.86 -0.34 -12.53 16 8 H 0.08 2.03 7.89 -52.49 -0.41 1.61 16 9 C 0.10 2.83 5.58 -106.80 -0.60 2.24 16 10 C -0.15 -4.04 8.63 -39.27 -0.34 -4.38 16 11 C -0.11 -2.65 9.90 -39.78 -0.39 -3.05 16 12 C -0.01 -0.23 6.29 -83.62 -0.53 -0.76 16 13 N -0.65 -11.77 5.28 -12.39 -0.07 -11.83 16 14 C 0.53 9.68 7.38 -15.04 -0.11 9.57 16 15 O -0.54 -12.07 13.57 5.10 0.07 -12.00 16 16 C -0.23 -3.02 9.39 -39.28 -0.37 -3.39 16 17 C 0.01 0.14 9.40 -39.20 -0.37 -0.23 16 18 C 0.01 0.14 6.74 -83.90 -0.57 -0.42 16 19 C -0.15 -1.51 10.86 -38.98 -0.42 -1.94 16 20 C -0.21 -1.80 10.81 -39.98 -0.43 -2.23 16 21 C 0.01 0.05 11.90 -16.79 -0.20 -0.15 16 22 N -0.55 -4.57 5.94 -10.56 -0.06 -4.64 16 23 H 0.42 2.52 7.87 -40.82 -0.32 2.19 16 24 C -0.07 -1.84 8.60 -39.78 -0.34 -2.18 16 25 C -0.22 -5.65 9.74 -39.26 -0.38 -6.04 16 26 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 27 H 0.12 3.29 6.07 -52.49 -0.32 2.97 16 28 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 29 H 0.39 5.56 8.77 -40.82 -0.36 5.20 16 30 H 0.11 1.07 6.93 -52.49 -0.36 0.70 16 31 H 0.15 2.00 7.46 -52.49 -0.39 1.61 16 32 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 34 H 0.17 0.70 8.06 -52.48 -0.42 0.27 16 35 H 0.11 2.59 6.28 -52.49 -0.33 2.26 16 36 H 0.09 2.34 8.06 -52.49 -0.42 1.91 16 LS Contribution 315.85 15.07 4.76 4.76 Total: -1.00 -32.27 315.85 -8.95 -41.23 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -3.75 Total: 12.56 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -5.48 Total: -23.74 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.47 Total: -36.49 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.07 Total: -12.00 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.27 -8.95 -41.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189610063.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.475 kcal (2) G-P(sol) polarization free energy of solvation -32.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds