Wall clock time and date at job start Tue Mar 31 2020 05:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46778 * 2 1 4 4 O 1.42898 * 109.47516 * 120.00239 * 2 1 3 5 5 C 1.35903 * 116.99952 * 275.32918 * 4 2 1 6 6 C 1.38762 * 120.04018 * 185.35569 * 5 4 2 7 7 C 1.38135 * 119.99516 * 179.97438 * 6 5 4 8 8 C 1.38244 * 120.07948 * 359.97438 * 7 6 5 9 9 C 1.38479 * 120.08603 * 0.04346 * 8 7 6 10 10 F 1.35100 * 120.00080 * 179.97438 * 9 8 7 11 11 C 1.38385 * 120.00229 * 359.69882 * 9 8 7 12 12 C 1.50702 * 109.46978 * 240.00500 * 2 1 3 13 13 O 1.20820 * 119.99738 * 244.99355 * 12 2 1 14 14 O 1.34229 * 119.99938 * 64.99960 * 12 2 1 15 15 C 1.45203 * 116.99970 * 180.02562 * 14 12 2 16 16 C 1.52997 * 109.47151 * 179.97438 * 15 14 12 17 17 C 1.50699 * 109.47184 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00006 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00296 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00331 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99977 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.47141 * 90.00251 * 21 19 17 23 23 H 1.48493 * 109.47442 * 210.00330 * 21 19 17 24 24 H 1.48500 * 109.47132 * 330.00413 * 21 19 17 25 25 H 1.09000 * 109.46778 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47327 * 59.99384 * 1 2 3 27 27 H 1.09003 * 109.46727 * 299.99383 * 1 2 3 28 28 H 1.07997 * 120.00625 * 0.02562 * 6 5 4 29 29 H 1.08003 * 119.96204 * 180.02562 * 7 6 5 30 30 H 1.08000 * 119.96128 * 180.02562 * 8 7 6 31 31 H 1.08000 * 120.04028 * 180.27677 * 11 9 8 32 32 H 1.09000 * 109.46660 * 299.99464 * 15 14 12 33 33 H 1.08999 * 109.47345 * 59.99641 * 15 14 12 34 34 H 1.08999 * 109.47446 * 300.00011 * 16 15 14 35 35 H 1.08999 * 109.46970 * 59.99802 * 16 15 14 36 36 H 0.96998 * 120.00190 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0065 -0.6737 1.1667 5 6 2.1061 0.0609 2.3058 6 6 2.6651 -0.4982 3.4462 7 6 2.7665 0.2494 4.6033 8 6 2.3120 1.5548 4.6269 9 6 1.7532 2.1159 3.4908 10 9 1.3091 3.3916 3.5159 11 6 1.6548 1.3718 2.3282 12 6 2.0324 -0.7103 -1.2305 13 8 2.6507 -1.7426 -1.1220 14 8 1.7929 -0.1961 -2.4471 15 6 2.3059 -0.9341 -3.5874 16 6 1.9370 -0.1999 -4.8780 17 6 2.4701 -0.9655 -6.0615 18 1 3.0176 -1.8838 -5.9084 19 6 2.2597 -0.4933 -7.3396 20 7 2.7245 -1.1617 -8.3725 21 14 1.3133 1.0953 -7.6044 22 1 2.2586 2.2406 -7.6039 23 1 0.6055 1.0384 -8.9086 24 1 0.3235 1.2699 -6.5113 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8901 28 1 3.0218 -1.5175 3.4288 29 1 3.2020 -0.1862 5.4904 30 1 2.3925 2.1377 5.5325 31 1 1.2232 1.8103 1.4406 32 1 3.3904 -1.0128 -3.5111 33 1 1.8692 -1.9327 -3.6004 34 1 0.8526 -0.1214 -4.9542 35 1 2.3735 0.7988 -4.8653 36 1 2.5762 -0.8297 -9.2718 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193020609.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:01 Heat of formation + Delta-G solvation = -146.662126 kcal Electronic energy + Delta-G solvation = -21077.431423 eV Core-core repulsion = 17441.818316 eV Total energy + Delta-G solvation = -3635.613107 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.26025 -40.98531 -39.85162 -37.76496 -36.22976 -33.44325 -32.56988 -31.08473 -30.74035 -29.96647 -25.93936 -24.75071 -23.33925 -22.80600 -20.92762 -20.59763 -19.06263 -17.71015 -17.29708 -16.75368 -16.58957 -16.43310 -16.03924 -15.97418 -15.78597 -15.30435 -14.52585 -14.28033 -14.11368 -13.69331 -13.41197 -13.21357 -12.78703 -12.61735 -12.47910 -12.23113 -11.89762 -11.63219 -11.60637 -11.33309 -11.31520 -10.77034 -10.61977 -10.05399 -9.97174 -9.79945 -9.40703 -9.33173 -8.67391 -8.66941 -6.17234 -4.19122 0.73459 0.86288 2.10689 2.26068 3.19272 3.24371 3.31126 3.32721 3.35330 3.80641 4.33209 4.34232 4.35564 4.52830 4.57958 4.63610 4.74045 4.89265 5.08095 5.16060 5.29468 5.34489 5.60607 5.64795 5.76600 5.82292 5.85146 5.87863 5.92321 6.27225 6.35556 6.61351 6.88676 7.08896 7.14021 7.56385 7.93198 8.34517 8.84120 9.41764 10.95241 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.030870 B = 0.003017 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.807759 B = 9277.434773 C = 9874.909566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.091 3.909 3 H 0.111 0.889 4 O -0.281 6.281 5 C 0.164 3.836 6 C -0.158 4.158 7 C -0.051 4.051 8 C -0.194 4.194 9 C 0.140 3.860 10 F -0.136 7.136 11 C -0.251 4.251 12 C 0.461 3.539 13 O -0.489 6.489 14 O -0.355 6.355 15 C 0.083 3.917 16 C -0.009 4.009 17 C -0.529 4.529 18 H 0.076 0.924 19 C 0.073 3.927 20 N -0.896 5.896 21 Si 0.882 3.118 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.263 1.263 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.137 0.863 31 H 0.145 0.855 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.029 0.971 35 H 0.024 0.976 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.785 6.274 26.168 27.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.033 3.967 3 H 0.129 0.871 4 O -0.194 6.194 5 C 0.118 3.882 6 C -0.177 4.177 7 C -0.069 4.069 8 C -0.213 4.213 9 C 0.121 3.879 10 F -0.114 7.114 11 C -0.271 4.271 12 C 0.301 3.699 13 O -0.376 6.376 14 O -0.272 6.272 15 C 0.011 3.989 16 C -0.046 4.046 17 C -0.567 4.567 18 H 0.094 0.906 19 C -0.130 4.130 20 N -0.534 5.534 21 Si 0.708 3.292 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.188 1.188 25 H 0.096 0.904 26 H 0.112 0.888 27 H 0.096 0.904 28 H 0.159 0.841 29 H 0.159 0.841 30 H 0.155 0.845 31 H 0.163 0.837 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.047 0.953 35 H 0.043 0.957 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.552 5.785 25.887 26.763 hybrid contribution -0.479 1.101 -0.451 1.282 sum -4.031 6.885 25.436 26.658 Atomic orbital electron populations 1.22339 0.91332 1.04889 1.04710 1.21748 0.96423 0.96718 0.81796 0.87126 1.86209 1.80715 1.36939 1.15564 1.18754 0.93576 0.89153 0.86705 1.20576 1.04049 1.02171 0.90901 1.20830 0.96024 0.92590 0.97417 1.21083 1.04816 0.97211 0.98195 1.17374 0.97007 0.79174 0.94383 1.91522 1.86917 1.35930 1.97073 1.21286 1.10675 0.95303 0.99790 1.22696 0.77833 0.84019 0.85324 1.90691 1.36642 1.22964 1.87265 1.86448 1.72262 1.53769 1.14685 1.23504 0.98728 0.95377 0.81293 1.19638 0.98015 0.96710 0.90241 1.20819 1.36761 1.10249 0.88882 0.90595 1.24936 0.95078 0.97228 0.95732 1.69892 1.45520 1.39240 0.98702 0.86745 0.80753 0.83794 0.77871 1.20030 1.21131 1.18764 0.90400 0.88803 0.90413 0.84121 0.84082 0.84537 0.83692 0.91422 0.91359 0.95265 0.95726 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 9.15 37.16 0.34 -1.36 16 2 C 0.09 1.10 2.75 -27.88 -0.08 1.02 16 3 H 0.11 1.11 6.31 -51.93 -0.33 0.78 16 4 O -0.28 -3.63 9.34 -39.34 -0.37 -4.00 16 5 C 0.16 1.75 6.60 -39.23 -0.26 1.50 16 6 C -0.16 -1.42 9.99 -39.43 -0.39 -1.81 16 7 C -0.05 -0.35 10.04 -39.62 -0.40 -0.75 16 8 C -0.19 -1.49 10.02 -39.49 -0.40 -1.89 16 9 C 0.14 1.32 7.30 -39.44 -0.29 1.03 16 10 F -0.14 -1.37 17.27 2.25 0.04 -1.34 16 11 C -0.25 -2.44 8.21 -39.37 -0.32 -2.76 16 12 C 0.46 7.63 7.29 36.01 0.26 7.90 16 13 O -0.49 -9.67 16.25 -25.46 -0.41 -10.08 16 14 O -0.35 -6.38 10.21 -39.25 -0.40 -6.78 16 15 C 0.08 1.73 5.40 37.16 0.20 1.93 16 16 C -0.01 -0.20 4.42 -27.89 -0.12 -0.33 16 17 C -0.53 -14.80 9.66 -34.44 -0.33 -15.13 16 18 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 19 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 20 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 21 Si 0.88 21.03 27.47 -169.99 -4.67 16.36 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 25 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.08 0.61 6.91 -51.93 -0.36 0.25 16 28 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 29 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 30 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.15 1.24 5.43 -52.49 -0.28 0.95 16 32 H 0.07 1.42 8.13 -51.93 -0.42 0.99 16 33 H 0.07 1.42 8.13 -51.93 -0.42 1.00 16 34 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 35 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 36 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 317.98 15.07 4.79 4.79 Total: -1.00 -32.10 317.98 -6.41 -38.51 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -4.28 Total: -2.53 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -1.88 Total: -8.68 kcal Atomic # 7 Polarization: -27.04 SS G_CDS: 0.77 Total: -26.27 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -1.18 Total: -20.86 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.10 -6.41 -38.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193020609.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.149 kcal (2) G-P(sol) polarization free energy of solvation -32.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds