Wall clock time and date at job start Tue Mar 31 2020 05:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47630 * 2 1 4 4 C 1.52997 * 109.47330 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47182 * 299.99613 * 4 3 2 6 6 C 1.50699 * 109.47129 * 179.97438 * 5 4 3 7 7 N 1.29946 * 126.29335 * 300.02856 * 6 5 4 8 8 O 1.21300 * 110.25269 * 179.67956 * 7 6 5 9 9 C 1.33643 * 109.81038 * 0.47090 * 8 7 6 10 10 C 1.50698 * 126.55187 * 179.79880 * 9 8 7 11 11 S 1.80998 * 109.47116 * 269.68760 * 10 9 8 12 12 C 1.76199 * 100.00013 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00250 * 0.02562 * 12 11 10 14 14 C 1.38798 * 120.00102 * 179.72368 * 12 11 10 15 15 N 1.31634 * 120.00298 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99861 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47644 * 89.99884 * 16 14 12 18 18 H 1.48506 * 109.47143 * 209.99830 * 16 14 12 19 19 H 1.48501 * 109.47120 * 329.99545 * 16 14 12 20 20 N 1.31131 * 106.89729 * 359.53556 * 9 8 7 21 21 C 1.53004 * 109.47178 * 60.00151 * 5 4 3 22 22 C 1.53005 * 109.47099 * 300.00146 * 21 5 4 23 23 H 1.08999 * 109.46939 * 60.00083 * 1 2 3 24 24 H 1.08996 * 109.47687 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47123 * 300.00547 * 1 2 3 26 26 H 1.08995 * 109.47626 * 239.99552 * 2 1 3 27 27 H 1.08995 * 109.46982 * 59.99158 * 3 2 1 28 28 H 1.09005 * 109.46285 * 299.99629 * 3 2 1 29 29 H 1.09004 * 109.47175 * 179.97438 * 4 3 2 30 30 H 1.09007 * 109.47209 * 59.99656 * 4 3 2 31 31 H 1.08997 * 109.47149 * 300.00007 * 5 4 3 32 32 H 1.09001 * 109.47434 * 149.68522 * 10 9 8 33 33 H 1.08999 * 109.47072 * 29.69002 * 10 9 8 34 34 H 0.96995 * 120.00138 * 180.02562 * 15 14 12 35 35 H 1.09007 * 109.46737 * 59.99646 * 21 5 4 36 36 H 1.08999 * 109.47397 * 179.97438 * 21 5 4 37 37 H 1.08997 * 109.46883 * 299.99933 * 22 21 5 38 38 H 1.08999 * 109.47200 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0795 0.7214 1.2502 6 6 5.5865 0.7208 1.2506 7 7 6.3556 0.1969 0.3436 8 8 7.5214 0.3695 0.6309 9 6 7.6094 1.0313 1.7887 10 6 8.8764 1.4391 2.4953 11 16 9.3834 0.1246 3.6315 12 6 10.8451 0.8458 4.3009 13 1 11.1636 1.8241 3.9728 14 6 11.5838 0.1591 5.2545 15 7 12.6760 0.6976 5.7542 16 14 11.0286 -1.5299 5.8277 17 1 11.6402 -2.5716 4.9641 18 1 11.4553 -1.7402 7.2345 19 1 9.5490 -1.6207 5.7404 20 7 6.3825 1.2629 2.1894 21 6 3.5695 -0.7211 1.2503 22 6 2.0394 -0.7211 1.2497 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.6767 1.9563 0.8899 28 1 1.6768 1.9562 -0.8901 29 1 3.9335 2.4701 0.0002 30 1 3.9338 0.9283 -0.8891 31 1 3.7158 1.2354 2.1399 32 1 8.7002 2.3567 3.0566 33 1 9.6637 1.6082 1.7607 34 1 13.1924 0.2175 6.4203 35 1 3.9332 -1.2351 0.3605 36 1 3.9328 -1.2349 2.1403 37 1 1.6758 -0.2071 2.1394 38 1 1.6760 -1.7487 1.2493 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230997701.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:00 Heat of formation + Delta-G solvation = 29.493561 kcal Electronic energy + Delta-G solvation = -19368.852950 eV Core-core repulsion = 16339.384454 eV Total energy + Delta-G solvation = -3029.468496 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.31607 -39.19660 -35.74814 -33.91573 -32.57318 -32.01388 -31.05797 -28.58513 -27.12741 -25.76880 -23.58041 -22.95083 -22.70515 -20.71173 -19.75490 -18.01408 -17.83032 -17.05068 -15.73312 -15.15585 -14.80668 -14.55991 -14.47869 -14.42307 -14.28667 -13.79410 -13.33959 -12.94052 -12.68510 -12.47781 -12.38878 -12.11787 -12.04467 -11.62732 -11.40138 -11.26424 -11.18772 -11.12087 -10.93580 -10.85252 -10.71222 -10.48831 -10.29168 -10.02726 -9.51750 -9.13531 -8.78293 -7.15550 -6.40696 -4.17406 1.27413 2.29981 2.88858 3.08741 3.22829 3.36932 3.44175 3.68203 4.17443 4.20490 4.41460 4.43223 4.59253 4.61277 4.85055 4.90081 4.98446 5.11859 5.15164 5.21109 5.25080 5.33304 5.38595 5.50731 5.53502 5.62431 5.65548 5.77788 5.81306 5.91327 5.91749 5.96394 5.97963 6.07918 6.08811 6.20564 6.28396 7.82205 8.31412 8.40949 9.03249 10.68144 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.036871 B = 0.003285 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.229189 B = 8520.699307 C = 8940.976637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.111 4.111 4 C -0.111 4.111 5 C 0.008 3.992 6 C 0.172 3.828 7 N -0.388 5.388 8 O 0.077 5.923 9 C 0.219 3.781 10 C -0.012 4.012 11 S -0.165 6.165 12 C -0.512 4.512 13 H 0.096 0.904 14 C 0.098 3.902 15 N -0.873 5.873 16 Si 0.856 3.144 17 H -0.266 1.266 18 H -0.271 1.271 19 H -0.237 1.237 20 N -0.478 5.478 21 C -0.112 4.112 22 C -0.111 4.111 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.273 0.727 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.776 -0.274 -10.788 23.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.149 4.149 4 C -0.149 4.149 5 C -0.012 4.012 6 C -0.102 4.102 7 N -0.097 5.097 8 O 0.019 5.981 9 C -0.002 4.002 10 C -0.160 4.160 11 S 0.061 5.939 12 C -0.659 4.659 13 H 0.114 0.886 14 C -0.111 4.111 15 N -0.509 5.509 16 Si 0.681 3.319 17 H -0.191 1.191 18 H -0.196 1.196 19 H -0.162 1.162 20 N -0.213 5.213 21 C -0.151 4.151 22 C -0.149 4.149 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.135 0.865 33 H 0.127 0.873 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.698 -1.521 -10.881 24.321 hybrid contribution 0.917 0.467 0.275 1.065 sum -20.780 -1.054 -10.605 23.354 Atomic orbital electron populations 1.21826 0.95206 1.01670 1.01744 1.21184 0.95400 0.96136 0.98649 1.21578 0.94521 0.96479 1.02274 1.21578 0.95872 1.00480 0.96985 1.19546 0.82666 0.98217 1.00742 1.25751 0.99787 0.96452 0.88164 1.74524 0.89391 1.21970 1.23847 1.85299 1.22181 1.55668 1.34932 1.28189 0.96273 0.91006 0.84706 1.21685 0.89874 1.03820 1.00642 1.84644 1.35130 1.24485 1.49688 1.22081 1.07530 1.07868 1.28466 0.88616 1.24697 0.93848 0.98093 0.94508 1.69915 1.14683 1.38368 1.27945 0.86758 0.81843 0.84134 0.79214 1.19069 1.19647 1.16164 1.71948 0.99482 1.23414 1.26436 1.21589 0.95826 0.94639 1.03011 1.21583 0.94545 1.00683 0.98054 0.92762 0.92725 0.92640 0.91087 0.91584 0.91596 0.91616 0.91192 0.88204 0.86450 0.87266 0.91669 0.91180 0.91402 0.91565 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.19 37.16 0.34 -0.60 16 2 C -0.10 -0.72 2.72 -90.62 -0.25 -0.97 16 3 C -0.11 -0.88 5.20 -26.73 -0.14 -1.01 16 4 C -0.11 -1.12 5.19 -26.73 -0.14 -1.26 16 5 C 0.01 0.10 2.66 -91.77 -0.24 -0.14 16 6 C 0.17 2.73 6.72 -156.37 -1.05 1.68 16 7 N -0.39 -6.55 12.16 30.90 0.38 -6.17 16 8 O 0.08 1.35 11.31 18.10 0.20 1.56 16 9 C 0.22 3.94 7.77 -13.06 -0.10 3.83 16 10 C -0.01 -0.21 6.30 36.00 0.23 0.01 16 11 S -0.16 -3.85 19.39 -107.50 -2.08 -5.94 16 12 C -0.51 -13.94 10.04 30.94 0.31 -13.63 16 13 H 0.10 2.72 8.03 -52.49 -0.42 2.29 16 14 C 0.10 2.74 5.50 -17.43 -0.10 2.64 16 15 N -0.87 -25.35 13.97 55.49 0.78 -24.57 16 16 Si 0.86 20.67 27.74 -169.99 -4.72 15.95 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.24 -5.67 6.74 56.52 0.38 -5.29 16 20 N -0.48 -8.59 11.55 -9.87 -0.11 -8.71 16 21 C -0.11 -1.21 5.18 -26.73 -0.14 -1.35 16 22 C -0.11 -0.92 5.20 -26.72 -0.14 -1.06 16 23 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16 33 H 0.11 1.83 8.14 -51.92 -0.42 1.41 16 34 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 327.22 15.07 4.93 4.93 Total: -1.00 -29.37 327.22 -7.96 -37.33 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -5.92 Total: -2.53 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -1.42 Total: -11.86 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 1.04 Total: -39.45 kcal Atomic # 8 Polarization: 1.35 SS G_CDS: 0.20 Total: 1.56 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.72 Total: 15.95 kcal Atomic # 16 Polarization: -3.85 SS G_CDS: -2.08 Total: -5.94 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.37 -7.96 -37.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230997701.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.825 kcal (2) G-P(sol) polarization free energy of solvation -29.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds