Wall clock time and date at job start Tue Mar 31 2020 05:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47168 * 2 1 4 4 N 1.46494 * 109.47337 * 180.02562 * 3 2 1 5 5 C 1.33330 * 119.99713 * 269.99965 * 4 3 2 6 6 H 1.07992 * 119.99554 * 137.09510 * 5 4 3 7 7 C 1.46789 * 119.99765 * 317.09747 * 5 4 3 8 8 N 1.29314 * 120.00337 * 352.68429 * 7 5 4 9 9 Si 1.86803 * 119.99718 * 172.68502 * 7 5 4 10 10 H 1.48503 * 109.46810 * 59.99767 * 9 7 5 11 11 H 1.48494 * 109.47170 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47158 * 300.00189 * 9 7 5 13 13 C 1.34770 * 120.00411 * 89.99789 * 4 3 2 14 14 O 1.21492 * 120.00102 * 5.10317 * 13 4 3 15 15 C 1.47558 * 120.00115 * 185.09677 * 13 4 3 16 16 N 1.31872 * 126.46868 * 355.35677 * 15 13 4 17 17 N 1.28478 * 110.09091 * 179.97438 * 16 15 13 18 18 H 0.97001 * 124.93232 * 180.02562 * 17 16 15 19 19 C 1.35608 * 110.13914 * 359.75296 * 17 16 15 20 20 C 1.50695 * 126.41738 * 180.29652 * 19 17 16 21 21 C 1.35338 * 107.16445 * 0.40072 * 19 17 16 22 22 N 1.48015 * 127.22414 * 179.88769 * 21 19 17 23 23 O 1.31708 * 119.99682 * 269.67543 * 22 21 19 24 24 O 1.31695 * 120.00152 * 89.40541 * 22 21 19 25 25 H 1.09001 * 109.46929 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47102 * 299.99759 * 1 2 3 27 27 H 1.09001 * 109.47262 * 60.00236 * 1 2 3 28 28 H 1.08999 * 109.47102 * 240.00241 * 2 1 3 29 29 H 1.08996 * 109.47260 * 120.00222 * 2 1 3 30 30 H 1.08999 * 109.46912 * 60.00124 * 3 2 1 31 31 H 1.09009 * 109.47114 * 300.00147 * 3 2 1 32 32 H 0.96993 * 120.00321 * 185.00667 * 8 7 5 33 33 H 1.09001 * 109.47647 * 270.11660 * 20 19 17 34 34 H 1.09003 * 109.47180 * 30.11993 * 20 19 17 35 35 H 1.08998 * 109.46890 * 150.11644 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1720 1.4424 1.1538 6 1 5.0353 0.8057 1.2784 7 6 3.7329 2.3077 2.2553 8 7 2.7900 3.1714 2.0626 9 14 4.5362 2.1610 3.9354 10 1 5.9894 2.4424 3.8154 11 1 3.9184 3.1389 4.8665 12 1 4.3401 0.7855 4.4595 13 6 4.1784 1.4427 -1.1680 14 8 3.5742 1.5364 -2.2179 15 6 5.6496 1.3292 -1.1711 16 7 6.4363 1.3074 -0.1129 17 7 7.6634 1.1989 -0.4775 18 1 8.4213 1.1622 0.1269 19 6 7.7451 1.1372 -1.8297 20 6 9.0054 1.0014 -2.6446 21 6 6.4828 1.2227 -2.3104 22 7 6.0617 1.2024 -3.7292 23 8 5.9619 2.3299 -4.4027 24 8 5.7919 0.0566 -4.3197 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 2.5494 3.7923 2.7679 33 1 9.3938 1.9920 -2.8811 34 1 9.7495 0.4463 -2.0733 35 1 8.7846 0.4676 -3.5689 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264291221.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:01 Heat of formation + Delta-G solvation = 75.716490 kcal Electronic energy + Delta-G solvation = -22783.683260 eV Core-core repulsion = 19209.925926 eV Total energy + Delta-G solvation = -3573.757334 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.116 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.75517 -38.59626 -38.18445 -35.23598 -33.83674 -33.19251 -32.81186 -32.06914 -31.53114 -28.01485 -26.01148 -25.75694 -24.77614 -22.88131 -20.93375 -20.65251 -19.30259 -18.27989 -17.74059 -17.24513 -16.70049 -15.88521 -15.65578 -15.07797 -14.82364 -14.51644 -13.99434 -13.83304 -13.34202 -13.19956 -13.09540 -12.67826 -12.43159 -11.73373 -11.61495 -11.37848 -11.15348 -11.02919 -10.95725 -10.76582 -10.64317 -10.45820 -10.16170 -10.09194 -9.82476 -9.50367 -9.22524 -9.12121 -8.83529 -7.73049 -6.60971 -4.05396 0.28065 1.47474 1.50869 1.98828 2.88851 3.01564 3.06202 3.06892 3.89089 4.09375 4.19794 4.49787 4.61845 4.73869 4.90950 5.11464 5.37629 5.43292 5.53600 5.77847 5.81545 5.95982 6.17032 6.38494 6.50147 6.53652 6.62907 6.78083 6.83733 7.03756 7.16606 7.17855 7.43528 7.78123 7.94230 8.33784 8.75612 9.35460 9.86143 10.35015 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.015549 B = 0.007223 C = 0.005377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.354213 B = 3875.672103 C = 5206.103769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C 0.102 3.898 4 N -0.380 5.380 5 C -0.364 4.364 6 H 0.113 0.887 7 C 0.056 3.944 8 N -0.827 5.827 9 Si 0.926 3.074 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.268 1.268 13 C 0.502 3.498 14 O -0.596 6.596 15 C 0.090 3.910 16 N -0.202 5.202 17 N -0.385 5.385 18 H 0.452 0.548 19 C 0.073 3.927 20 C -0.096 4.096 21 C -0.082 4.082 22 N 0.022 4.978 23 O -0.139 6.139 24 O -0.149 6.149 25 H 0.046 0.954 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.115 0.885 31 H 0.059 0.941 32 H 0.281 0.719 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.412 -3.661 0.526 10.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C -0.020 4.020 4 N -0.093 5.093 5 C -0.496 4.496 6 H 0.130 0.870 7 C -0.159 4.159 8 N -0.459 5.459 9 Si 0.751 3.249 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.193 1.193 13 C 0.290 3.710 14 O -0.482 6.482 15 C -0.073 4.073 16 N -0.034 5.034 17 N -0.098 5.098 18 H 0.298 0.702 19 C -0.057 4.057 20 C -0.154 4.154 21 C -0.178 4.178 22 N 0.518 4.482 23 O -0.345 6.345 24 O -0.352 6.352 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.133 0.867 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.066 -3.438 2.054 9.911 hybrid contribution 0.705 0.032 0.057 0.708 sum 9.771 -3.405 2.111 10.560 Atomic orbital electron populations 1.21644 0.96266 1.00578 1.01513 1.21804 0.94976 0.98908 1.01426 1.21788 0.80618 0.95240 1.04381 1.42230 1.05208 1.57621 1.04254 1.20660 1.14293 1.24997 0.89621 0.87041 1.27133 0.94816 0.93464 1.00475 1.68713 1.26116 1.15721 1.35355 0.86037 0.79838 0.78645 0.80371 1.19305 1.20771 1.19283 1.17173 0.82729 0.85545 0.85535 1.90685 1.67410 1.58312 1.31802 1.22265 0.96620 1.03488 0.84923 1.74769 0.87748 1.18120 1.22790 1.43766 1.08680 1.53283 1.04113 0.70173 1.20816 0.94899 1.03705 0.86308 1.20567 0.91512 1.04265 0.99090 1.19636 0.93958 1.23798 0.80409 1.48990 0.95569 1.02000 1.01653 1.96246 1.56288 1.16920 1.65050 1.96234 1.52822 1.14507 1.71622 0.93502 0.92879 0.93024 0.93022 0.92084 0.86728 0.92228 0.90647 0.88992 0.89469 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.91 37.16 0.37 -2.05 16 2 C -0.13 -2.75 6.26 -26.73 -0.17 -2.92 16 3 C 0.10 2.47 5.04 -4.04 -0.02 2.44 16 4 N -0.38 -9.81 2.45 -114.43 -0.28 -10.09 16 5 C -0.36 -9.07 8.19 -13.45 -0.11 -9.18 16 6 H 0.11 2.70 5.92 -52.49 -0.31 2.39 16 7 C 0.06 1.35 5.39 -15.16 -0.08 1.26 16 8 N -0.83 -20.63 11.11 56.00 0.62 -20.00 16 9 Si 0.93 18.40 29.65 -169.99 -5.04 13.36 16 10 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 11 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 12 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 13 C 0.50 13.35 7.61 -12.46 -0.09 13.25 16 14 O -0.60 -17.29 16.02 5.37 0.09 -17.20 16 15 C 0.09 2.07 6.85 -82.79 -0.57 1.50 16 16 N -0.20 -3.99 9.02 33.41 0.30 -3.69 16 17 N -0.39 -5.41 6.86 33.59 0.23 -5.18 16 18 H 0.45 3.98 8.96 -190.43 -1.71 2.28 16 19 C 0.07 1.07 7.25 -81.96 -0.59 0.48 16 20 C -0.10 -0.90 10.44 36.00 0.38 -0.52 16 21 C -0.08 -1.68 6.87 -79.72 -0.55 -2.23 16 22 N 0.02 0.47 4.47 34.07 0.15 0.63 16 23 O -0.14 -3.13 19.97 -31.57 -0.63 -3.76 16 24 O -0.15 -3.28 19.97 -31.56 -0.63 -3.91 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.12 2.84 5.36 -51.93 -0.28 2.56 16 31 H 0.06 1.51 7.36 -51.92 -0.38 1.12 16 32 H 0.28 6.51 8.27 -40.82 -0.34 6.17 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 315.64 15.07 4.76 4.76 Total: -1.00 -32.74 315.64 -7.07 -39.81 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -5.19 Total: 3.23 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -1.44 Total: 2.04 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 1.03 Total: -38.33 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -1.17 Total: -24.87 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.04 Total: 13.36 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.74 -7.07 -39.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264291221.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.523 kcal (2) G-P(sol) polarization free energy of solvation -32.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds