Wall clock time and date at job start Tue Mar 31 2020 05:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47382 * 2 1 4 4 O 1.42910 * 109.46884 * 120.00372 * 2 1 3 5 5 C 1.53008 * 109.47095 * 239.99825 * 2 1 3 6 6 H 1.08996 * 109.47043 * 59.99964 * 5 2 1 7 7 C 1.53004 * 109.46907 * 300.00453 * 5 2 1 8 8 S 1.81399 * 109.47180 * 180.02562 * 5 2 1 9 9 C 1.81400 * 102.99688 * 185.00184 * 8 5 2 10 10 C 1.50707 * 109.46709 * 179.97438 * 9 8 5 11 11 C 1.38302 * 119.93031 * 89.99906 * 10 9 8 12 12 C 1.38101 * 120.06877 * 180.02562 * 11 10 9 13 13 C 1.38876 * 119.92956 * 359.97438 * 12 11 10 14 14 O 1.35750 * 120.06861 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53840 * 14 13 12 16 16 H 1.08003 * 120.00029 * 354.94359 * 15 14 13 17 17 C 1.38659 * 120.00122 * 174.94542 * 15 14 13 18 18 N 1.31558 * 119.99705 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 120.00035 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47181 * 89.99980 * 19 17 15 21 21 H 1.48498 * 109.47260 * 210.00361 * 19 17 15 22 22 H 1.48502 * 109.47130 * 330.00179 * 19 17 15 23 23 C 1.38880 * 119.86555 * 0.27954 * 13 12 11 24 24 C 1.38105 * 119.92781 * 359.48865 * 23 13 12 25 25 H 1.08996 * 109.47382 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46576 * 300.00287 * 1 2 3 27 27 H 1.09000 * 109.46840 * 59.99820 * 1 2 3 28 28 H 0.96697 * 114.00108 * 59.99542 * 4 2 1 29 29 H 1.09000 * 109.47290 * 299.99806 * 7 5 2 30 30 H 1.08996 * 109.47338 * 60.00053 * 7 5 2 31 31 H 1.08995 * 109.46702 * 179.97438 * 7 5 2 32 32 H 1.09002 * 109.47184 * 60.00197 * 9 8 5 33 33 H 1.08995 * 109.47223 * 299.99485 * 9 8 5 34 34 H 1.07999 * 119.96521 * 0.02562 * 11 10 9 35 35 H 1.07997 * 120.03156 * 179.97438 * 12 11 10 36 36 H 0.96997 * 119.99350 * 179.97438 * 18 17 15 37 37 H 1.07996 * 120.04097 * 179.72435 * 23 13 12 38 38 H 1.07996 * 119.96589 * 180.23432 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6738 1.1668 5 6 2.0400 -0.7213 -1.2493 6 1 1.6767 -0.2075 -2.1392 7 6 1.5299 -2.1638 -1.2492 8 16 3.8540 -0.7220 -1.2489 9 6 4.2620 -1.4689 -2.8509 10 6 5.7595 -1.5406 -3.0048 11 6 6.4452 -2.6598 -2.5687 12 6 7.8174 -2.7283 -2.7079 13 6 8.5088 -1.6721 -3.2868 14 8 9.8577 -1.7367 -3.4255 15 6 10.4529 -2.8982 -3.0871 16 1 9.8710 -3.6954 -2.6484 17 6 11.8119 -3.0693 -3.3023 18 7 12.3925 -4.2029 -2.9726 19 14 12.8181 -1.6908 -4.0617 20 1 13.3510 -0.8165 -2.9861 21 1 13.9468 -2.2694 -4.8341 22 1 11.9564 -0.8907 -4.9686 23 6 7.8180 -0.5474 -3.7189 24 6 6.4452 -0.4870 -3.5813 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.7209 -1.5953 1.2329 29 1 1.8932 -2.6777 -0.3593 30 1 0.4399 -2.1638 -1.2493 31 1 1.8928 -2.6775 -2.1394 32 1 3.8435 -0.8605 -3.6526 33 1 3.8428 -2.4738 -2.9006 34 1 5.9069 -3.4809 -2.1190 35 1 8.3523 -3.6023 -2.3668 36 1 13.3431 -4.3226 -3.1235 37 1 8.3533 0.2774 -4.1654 38 1 5.9070 0.3857 -3.9205 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266249535.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:14 Heat of formation + Delta-G solvation = -64.603869 kcal Electronic energy + Delta-G solvation = -19010.893042 eV Core-core repulsion = 15945.051424 eV Total energy + Delta-G solvation = -3065.841618 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.22864 -38.40618 -36.90025 -33.31308 -32.53438 -31.36715 -30.28747 -29.69988 -26.49369 -25.30631 -24.72994 -22.13182 -21.14346 -20.47597 -17.93312 -17.47609 -17.15275 -16.19117 -15.75614 -15.06293 -14.98797 -14.86654 -14.35024 -14.19721 -13.80251 -13.65696 -13.35595 -12.99780 -12.74128 -12.60218 -12.46321 -12.24288 -12.10024 -12.01599 -11.79239 -11.24717 -11.13343 -11.00555 -10.77104 -10.69268 -10.24493 -10.17963 -9.68567 -9.42511 -8.88449 -8.30782 -7.52738 -7.32894 -6.45271 -4.11377 1.42294 2.10725 2.31793 2.81552 3.21578 3.24274 3.38427 4.09962 4.21095 4.33683 4.49118 4.53213 4.80080 4.80508 4.88868 4.96332 5.06585 5.07656 5.14952 5.22713 5.38783 5.43129 5.58403 5.61598 5.67525 5.70051 5.71988 5.90578 6.09716 6.27897 6.51374 6.74469 6.98064 7.17198 7.25214 7.39471 7.55713 7.76284 7.99627 8.89537 9.51055 10.62080 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.042146 B = 0.003002 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.202022 B = 9326.294115 C = 9478.881396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.124 3.876 3 H 0.105 0.895 4 O -0.550 6.550 5 C -0.107 4.107 6 H 0.090 0.910 7 C -0.154 4.154 8 S -0.231 6.231 9 C -0.025 4.025 10 C -0.170 4.170 11 C -0.051 4.051 12 C -0.222 4.222 13 C 0.166 3.834 14 O -0.213 6.213 15 C -0.390 4.390 16 H 0.108 0.892 17 C 0.064 3.936 18 N -0.877 5.877 19 Si 0.906 3.094 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.259 1.259 23 C -0.193 4.193 24 C -0.056 4.056 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.372 0.628 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.111 0.889 35 H 0.135 0.865 36 H 0.280 0.720 37 H 0.119 0.881 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.282 5.743 1.802 23.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.063 3.937 3 H 0.123 0.877 4 O -0.355 6.355 5 C -0.236 4.236 6 H 0.108 0.892 7 C -0.213 4.213 8 S 0.000 6.000 9 C -0.173 4.173 10 C -0.173 4.173 11 C -0.071 4.071 12 C -0.241 4.241 13 C 0.113 3.887 14 O -0.118 6.118 15 C -0.465 4.465 16 H 0.125 0.875 17 C -0.140 4.140 18 N -0.514 5.514 19 Si 0.731 3.269 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.183 1.183 23 C -0.212 4.212 24 C -0.076 4.076 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.220 0.780 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.129 0.871 35 H 0.152 0.848 36 H 0.090 0.910 37 H 0.137 0.863 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -20.964 6.731 2.645 22.177 hybrid contribution -0.585 -0.659 -1.417 1.669 sum -21.549 6.072 1.228 22.422 Atomic orbital electron populations 1.22564 0.95797 1.02872 1.02956 1.21637 0.92540 0.96545 0.82930 0.87744 1.86659 1.77127 1.28920 1.42832 1.23970 0.96910 1.00044 1.02647 0.89205 1.22154 1.01070 0.94694 1.03382 1.87621 1.03050 1.82428 1.26879 1.22117 0.96979 1.02419 0.95739 1.18649 0.91991 0.97286 1.09377 1.20634 0.93641 0.96384 0.96438 1.21253 0.94247 1.01261 1.07339 1.19161 0.83596 0.93434 0.92549 1.83568 1.15473 1.37325 1.75434 1.20797 0.93347 0.90832 1.41564 0.87515 1.24485 0.95893 0.97264 0.96336 1.69646 1.12299 1.23765 1.45731 0.86170 0.79314 0.81415 0.79967 1.19794 1.20760 1.18307 1.20180 0.93549 0.98640 1.08874 1.20476 0.93063 0.96765 0.97302 0.91826 0.91395 0.91494 0.78000 0.91253 0.91751 0.91968 0.90522 0.90333 0.87108 0.84754 0.90962 0.86330 0.86785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.11 9.18 37.16 0.34 -0.77 16 2 C 0.12 1.08 3.39 -26.73 -0.09 0.99 16 3 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 4 O -0.55 -5.74 12.89 -35.23 -0.45 -6.19 16 5 C -0.11 -0.98 2.73 -26.73 -0.07 -1.05 16 6 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 7 C -0.15 -1.16 8.44 37.16 0.31 -0.85 16 8 S -0.23 -3.11 20.77 -107.50 -2.23 -5.34 16 9 C -0.03 -0.33 5.76 36.01 0.21 -0.13 16 10 C -0.17 -2.84 5.14 -104.57 -0.54 -3.38 16 11 C -0.05 -0.93 9.69 -39.61 -0.38 -1.31 16 12 C -0.22 -4.79 9.17 -39.40 -0.36 -5.15 16 13 C 0.17 3.83 6.65 -39.11 -0.26 3.57 16 14 O -0.21 -5.62 8.59 0.05 0.00 -5.62 16 15 C -0.39 -10.95 9.95 30.89 0.31 -10.64 16 16 H 0.11 3.06 5.44 -52.48 -0.29 2.77 16 17 C 0.06 1.79 5.49 -17.51 -0.10 1.69 16 18 N -0.88 -25.23 13.96 55.48 0.77 -24.45 16 19 Si 0.91 21.59 28.62 -169.99 -4.86 16.72 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16 23 C -0.19 -3.83 9.99 -39.39 -0.39 -4.23 16 24 C -0.06 -0.96 9.69 -39.61 -0.38 -1.35 16 25 H 0.06 0.33 6.43 -51.93 -0.33 0.00 16 26 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.37 2.75 7.33 45.56 0.33 3.08 16 29 H 0.07 0.53 6.78 -51.93 -0.35 0.17 16 30 H 0.06 0.37 6.43 -51.93 -0.33 0.04 16 31 H 0.06 0.50 6.92 -51.93 -0.36 0.14 16 32 H 0.08 0.90 8.08 -51.92 -0.42 0.48 16 33 H 0.08 0.94 7.09 -51.93 -0.37 0.57 16 34 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.13 3.04 5.64 -52.49 -0.30 2.74 16 36 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.12 2.19 8.06 -52.49 -0.42 1.76 16 38 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 326.61 15.07 4.92 4.92 Total: -1.00 -30.38 326.61 -7.77 -38.15 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -4.51 Total: 4.41 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -1.41 Total: -22.60 kcal Atomic # 7 Polarization: -25.23 SS G_CDS: 0.77 Total: -24.45 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -0.45 Total: -11.81 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.86 Total: 16.72 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -2.23 Total: -5.34 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.38 -7.77 -38.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266249535.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.451 kcal (2) G-P(sol) polarization free energy of solvation -30.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds