Wall clock time and date at job start Tue Mar 31 2020 05:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.47006 * 2 1 4 4 S 1.81410 * 109.46858 * 119.99726 * 2 1 3 5 5 C 1.81406 * 102.99997 * 294.99851 * 4 2 1 6 6 C 1.50694 * 109.46797 * 180.02562 * 5 4 2 7 7 C 1.38296 * 119.93377 * 90.00456 * 6 5 4 8 8 C 1.38098 * 120.07035 * 179.69926 * 7 6 5 9 9 C 1.38875 * 119.93249 * 0.27809 * 8 7 6 10 10 O 1.35746 * 120.07087 * 180.02562 * 9 8 7 11 11 C 1.34831 * 117.00106 * 354.45526 * 10 9 8 12 12 H 1.08004 * 119.99708 * 5.06598 * 11 10 9 13 13 C 1.38658 * 120.00074 * 185.05736 * 11 10 9 14 14 N 1.31557 * 120.00233 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99685 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46818 * 90.00243 * 15 13 11 17 17 H 1.48507 * 109.46911 * 210.00276 * 15 13 11 18 18 H 1.48500 * 109.47360 * 330.00069 * 15 13 11 19 19 C 1.38877 * 119.86135 * 359.97438 * 9 8 7 20 20 C 1.38098 * 119.93069 * 0.02562 * 19 9 8 21 21 C 1.52993 * 109.47162 * 239.99871 * 2 1 3 22 22 H 1.09001 * 109.47328 * 185.00192 * 21 2 1 23 23 C 1.52991 * 109.47447 * 64.99976 * 21 2 1 24 24 O 1.42901 * 109.47069 * 305.00057 * 21 2 1 25 25 H 1.08993 * 109.46934 * 59.99838 * 1 2 3 26 26 H 1.08997 * 109.46995 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47217 * 300.00224 * 1 2 3 28 28 H 1.09005 * 109.46918 * 60.00197 * 5 4 2 29 29 H 1.09002 * 109.47205 * 300.00217 * 5 4 2 30 30 H 1.07998 * 119.96537 * 359.96916 * 7 6 5 31 31 H 1.08004 * 120.03589 * 180.29008 * 8 7 6 32 32 H 0.96992 * 119.99905 * 179.97438 * 14 13 11 33 33 H 1.08004 * 120.03673 * 180.02562 * 19 9 8 34 34 H 1.08004 * 119.96716 * 180.02562 * 20 19 9 35 35 H 1.09005 * 109.46903 * 60.00038 * 23 21 2 36 36 H 1.09003 * 109.47343 * 179.97438 * 23 21 2 37 37 H 1.09001 * 109.47032 * 300.00396 * 23 21 2 38 38 H 0.96698 * 114.00242 * 60.00226 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1347 -0.8551 1.4813 5 6 1.5664 0.2154 2.8310 6 6 1.9984 -0.3687 4.1512 7 6 3.2200 -0.0162 4.6952 8 6 3.6160 -0.5451 5.9079 9 6 2.7885 -1.4363 6.5785 10 8 3.1747 -1.9574 7.7710 11 6 4.4198 -1.6602 8.1945 12 1 5.0302 -0.9682 7.6333 13 6 4.9164 -2.2429 9.3506 14 7 4.1730 -3.0861 10.0339 15 14 6.6412 -1.8305 9.9376 16 1 6.5871 -0.6588 10.8483 17 1 7.2090 -2.9955 10.6629 18 1 7.4986 -1.5096 8.7684 19 6 1.5646 -1.7924 6.0272 20 6 1.1743 -1.2600 4.8142 21 6 2.0400 -0.7212 -1.2492 22 1 3.1264 -0.7995 -1.2055 23 6 1.6353 0.0688 -2.4952 24 8 1.4702 -2.0303 -1.3093 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.4791 0.2883 2.8038 29 1 2.0002 1.2086 2.7142 30 1 3.8632 0.6767 4.1732 31 1 4.5681 -0.2658 6.3345 32 1 4.5206 -3.4940 10.8424 33 1 0.9187 -2.4849 6.5465 34 1 0.2225 -1.5362 4.3850 35 1 2.0700 1.0674 -2.4493 36 1 1.9991 -0.4448 -3.3852 37 1 0.5490 0.1471 -2.5389 38 1 0.5041 -2.0373 -1.3503 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266249538.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:17 Heat of formation + Delta-G solvation = -66.972243 kcal Electronic energy + Delta-G solvation = -18976.259729 eV Core-core repulsion = 15910.315410 eV Total energy + Delta-G solvation = -3065.944319 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.06125 -38.39646 -36.71709 -33.23936 -32.48169 -31.14896 -30.19901 -29.74186 -26.24891 -25.23191 -24.92856 -22.00281 -21.16171 -20.49604 -18.02249 -17.40354 -16.90129 -16.09989 -15.77117 -15.05046 -14.83578 -14.72010 -14.51370 -14.18582 -13.74532 -13.53520 -13.22082 -13.05866 -12.72754 -12.55825 -12.42380 -12.21160 -11.97768 -11.85556 -11.61802 -11.23240 -11.13409 -10.89928 -10.74990 -10.66197 -10.44949 -10.20199 -9.64935 -9.36552 -8.83896 -8.21683 -7.48672 -7.18218 -6.48243 -4.06290 1.49089 2.20838 2.39697 2.87617 3.12190 3.13718 3.18015 3.94734 4.10626 4.35981 4.57253 4.58287 4.81630 4.91125 4.98501 5.05895 5.12614 5.19994 5.24321 5.27656 5.40669 5.45533 5.62934 5.69048 5.71132 5.72906 5.82091 5.92369 6.18615 6.37979 6.65761 6.86709 7.01968 7.20454 7.32585 7.40332 7.40605 7.77630 7.96844 8.97206 9.66203 10.69501 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.037174 B = 0.002983 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.042912 B = 9384.379734 C = 9640.777141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 H 0.089 0.911 4 S -0.236 6.236 5 C -0.021 4.021 6 C -0.179 4.179 7 C -0.050 4.050 8 C -0.235 4.235 9 C 0.160 3.840 10 O -0.174 6.174 11 C -0.392 4.392 12 H 0.093 0.907 13 C 0.040 3.960 14 N -0.860 5.860 15 Si 0.942 3.058 16 H -0.273 1.273 17 H -0.277 1.277 18 H -0.267 1.267 19 C -0.193 4.193 20 C -0.053 4.053 21 C 0.124 3.876 22 H 0.105 0.895 23 C -0.182 4.182 24 O -0.550 6.550 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.128 0.872 32 H 0.271 0.729 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.090 7.960 -19.627 22.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.235 4.235 3 H 0.108 0.892 4 S -0.005 6.005 5 C -0.169 4.169 6 C -0.182 4.182 7 C -0.070 4.070 8 C -0.254 4.254 9 C 0.105 3.895 10 O -0.077 6.077 11 C -0.468 4.468 12 H 0.111 0.889 13 C -0.165 4.165 14 N -0.495 5.495 15 Si 0.766 3.234 16 H -0.198 1.198 17 H -0.202 1.202 18 H -0.191 1.191 19 C -0.213 4.213 20 C -0.073 4.073 21 C 0.063 3.937 22 H 0.123 0.877 23 C -0.241 4.241 24 O -0.356 6.356 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.126 0.874 31 H 0.146 0.854 32 H 0.081 0.919 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -4.974 6.552 -19.194 20.883 hybrid contribution -0.345 1.699 0.238 1.750 sum -5.319 8.250 -18.956 21.347 Atomic orbital electron populations 1.22138 0.93591 1.03108 1.02444 1.23951 0.99234 1.02664 0.97658 0.89239 1.87628 1.75253 1.38553 0.99035 1.22095 1.02336 0.98943 0.93478 1.18582 0.97793 1.05957 0.95887 1.20580 0.94330 0.97595 0.94502 1.21131 1.02562 1.03876 0.97867 1.19414 0.92929 0.91199 0.85951 1.83974 1.32214 1.63246 1.28218 1.21362 0.88868 1.27362 1.09234 0.88944 1.25314 0.99942 0.95632 0.95605 1.70037 1.36735 1.26751 1.15969 0.85699 0.80215 0.78301 0.79159 1.19844 1.20190 1.19106 1.20187 0.97085 1.06322 0.97685 1.20469 0.98129 0.94922 0.93750 1.21638 0.98830 0.82586 0.90610 0.87680 1.22550 1.02251 1.00985 0.98336 1.86660 1.25207 1.27158 1.96579 0.91877 0.91157 0.91937 0.90449 0.90658 0.87413 0.85385 0.91923 0.86324 0.86963 0.91478 0.91385 0.91937 0.78067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.43 37.16 0.31 -0.88 16 2 C -0.11 -1.01 2.67 -26.73 -0.07 -1.08 16 3 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 4 S -0.24 -3.30 20.92 -107.50 -2.25 -5.55 16 5 C -0.02 -0.29 5.76 36.00 0.21 -0.09 16 6 C -0.18 -3.12 5.14 -104.58 -0.54 -3.66 16 7 C -0.05 -0.93 9.69 -39.61 -0.38 -1.32 16 8 C -0.23 -5.15 9.17 -39.40 -0.36 -5.51 16 9 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 10 O -0.17 -4.97 9.76 0.06 0.00 -4.97 16 11 C -0.39 -10.95 9.49 30.89 0.29 -10.66 16 12 H 0.09 2.39 5.20 -52.48 -0.27 2.12 16 13 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 14 N -0.86 -25.20 13.67 55.48 0.76 -24.45 16 15 Si 0.94 20.48 29.55 -169.99 -5.02 15.46 16 16 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 17 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 18 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 19 C -0.19 -4.13 9.99 -39.40 -0.39 -4.52 16 20 C -0.05 -0.96 9.69 -39.61 -0.38 -1.34 16 21 C 0.12 1.13 3.33 -26.74 -0.09 1.04 16 22 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 23 C -0.18 -1.16 9.29 37.15 0.35 -0.82 16 24 O -0.55 -5.82 12.99 -35.23 -0.46 -6.27 16 25 H 0.06 0.37 6.56 -51.93 -0.34 0.03 16 26 H 0.07 0.54 6.72 -51.93 -0.35 0.20 16 27 H 0.06 0.51 6.92 -51.93 -0.36 0.15 16 28 H 0.08 0.94 7.09 -51.92 -0.37 0.58 16 29 H 0.07 0.94 8.08 -51.92 -0.42 0.52 16 30 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.13 2.79 5.64 -52.48 -0.30 2.50 16 32 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.12 2.43 8.06 -52.48 -0.42 2.01 16 34 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.33 6.56 -51.93 -0.34 -0.01 16 38 H 0.37 2.73 7.19 45.56 0.33 3.06 16 LS Contribution 328.03 15.07 4.94 4.94 Total: -1.00 -31.45 328.03 -7.96 -39.40 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -4.51 Total: 5.63 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: -1.42 Total: -24.20 kcal Atomic # 7 Polarization: -25.20 SS G_CDS: 0.76 Total: -24.45 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: -0.46 Total: -11.24 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: -3.30 SS G_CDS: -2.25 Total: -5.55 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.45 -7.96 -39.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266249538.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.567 kcal (2) G-P(sol) polarization free energy of solvation -31.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds