Wall clock time and date at job start Tue Mar 31 2020 05:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47223 * 2 1 4 4 C 1.53000 * 109.46918 * 239.99319 * 2 1 3 5 5 O 1.42902 * 109.46968 * 65.00242 * 4 2 1 6 6 C 1.53003 * 109.47052 * 119.99361 * 2 1 3 7 7 S 1.81395 * 109.47363 * 294.99965 * 6 2 1 8 8 C 1.81397 * 103.00047 * 179.97438 * 7 6 2 9 9 C 1.50703 * 109.46962 * 179.97438 * 8 7 6 10 10 C 1.38307 * 119.93055 * 269.72643 * 9 8 7 11 11 C 1.38099 * 120.06499 * 179.72922 * 10 9 8 12 12 C 1.38875 * 119.93479 * 0.56643 * 11 10 9 13 13 O 1.35749 * 120.07466 * 179.68689 * 12 11 10 14 14 C 1.34828 * 117.00562 * 174.49050 * 13 12 11 15 15 H 1.08006 * 119.99896 * 5.05627 * 14 13 12 16 16 C 1.38654 * 120.00458 * 185.05745 * 14 13 12 17 17 N 1.31551 * 120.00003 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99564 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47136 * 90.00393 * 18 16 14 20 20 H 1.48504 * 109.47045 * 210.00226 * 18 16 14 21 21 H 1.48499 * 109.47702 * 330.00140 * 18 16 14 22 22 C 1.38890 * 119.86009 * 359.70988 * 12 11 10 23 23 C 1.38094 * 119.92908 * 359.97438 * 22 12 11 24 24 H 1.09004 * 109.46859 * 300.00460 * 1 2 3 25 25 H 1.09001 * 109.47101 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46734 * 60.00399 * 1 2 3 27 27 H 1.09000 * 109.46739 * 184.99881 * 4 2 1 28 28 H 1.09001 * 109.47283 * 305.00020 * 4 2 1 29 29 H 0.96702 * 114.00007 * 180.02562 * 5 4 2 30 30 H 1.09001 * 109.47001 * 54.99777 * 6 2 1 31 31 H 1.09002 * 109.46893 * 174.99684 * 6 2 1 32 32 H 1.08997 * 109.47361 * 299.99680 * 8 7 6 33 33 H 1.09002 * 109.46827 * 60.00163 * 8 7 6 34 34 H 1.07996 * 119.96744 * 359.97438 * 10 9 8 35 35 H 1.08000 * 120.03516 * 180.27724 * 11 10 9 36 36 H 0.97000 * 119.99820 * 180.02562 * 17 16 14 37 37 H 1.07997 * 120.03345 * 179.97438 * 22 12 11 38 38 H 1.07997 * 119.96863 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 1.6620 0.0165 -2.4130 6 6 2.0400 -0.7211 1.2493 7 16 1.5602 0.2158 2.7266 8 6 2.2418 -0.7802 4.0808 9 6 1.9221 -0.1224 5.3984 10 6 2.8030 0.7936 5.9441 11 6 2.5101 1.4023 7.1486 12 6 1.3353 1.0851 7.8179 13 8 1.0477 1.6769 9.0052 14 6 -0.1588 1.4113 9.5453 15 1 -0.8132 0.6908 9.0771 16 6 -0.5595 2.0630 10.7017 17 7 -1.7365 1.8034 11.2288 18 14 0.5727 3.3085 11.5117 19 1 0.3031 4.6583 10.9545 20 1 0.3287 3.3200 12.9765 21 1 1.9862 2.9375 11.2483 22 6 0.4555 0.1605 7.2700 23 6 0.7509 -0.4399 6.0620 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 -0.8900 27 1 3.1263 -0.7996 -1.2055 28 1 1.6054 -1.7200 -1.2950 29 1 1.9525 -0.3836 -3.2441 30 1 1.6054 -1.7197 1.2954 31 1 3.1264 -0.7994 1.2056 32 1 1.8017 -1.7771 4.0558 33 1 3.3230 -0.8573 3.9665 34 1 3.7189 1.0361 5.4258 35 1 3.1962 2.1209 7.5721 36 1 -2.0169 2.2596 12.0376 37 1 -0.4587 -0.0886 7.7883 38 1 0.0674 -1.1592 5.6357 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266851797.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:54 Heat of formation + Delta-G solvation = -69.860674 kcal Electronic energy + Delta-G solvation = -18628.795082 eV Core-core repulsion = 15562.725511 eV Total energy + Delta-G solvation = -3066.069570 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.23979 -37.92012 -36.91167 -34.71874 -32.54872 -31.38109 -30.29935 -27.64368 -26.54636 -26.22173 -24.69969 -22.14465 -20.87363 -20.31893 -17.94982 -17.82613 -17.31556 -16.25504 -15.75012 -15.09948 -14.97505 -14.86390 -14.35379 -14.07666 -13.87585 -13.67611 -13.44356 -13.08123 -12.95015 -12.66802 -12.57985 -12.23424 -12.01324 -11.52953 -11.43638 -11.32948 -11.03972 -10.94143 -10.73718 -10.64957 -10.34263 -10.19184 -9.84223 -9.43367 -8.89186 -8.31992 -7.55405 -7.34374 -6.45919 -4.12093 1.39522 2.09679 2.31464 2.79777 3.20254 3.24281 3.38084 3.87223 4.20500 4.47800 4.48647 4.66914 4.79393 4.80134 4.99913 5.06244 5.08118 5.10391 5.13499 5.26891 5.45149 5.54512 5.58038 5.65247 5.70978 5.84639 5.99526 6.08698 6.18269 6.26705 6.50253 6.73372 6.96916 7.16017 7.24055 7.24414 7.54656 7.75419 7.98763 8.88819 9.50098 10.61360 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.040175 B = 0.002738 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.780128 B =10223.855961 C =10414.731340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.075 4.075 3 H 0.086 0.914 4 C 0.084 3.916 5 O -0.571 6.571 6 C -0.092 4.092 7 S -0.249 6.249 8 C -0.021 4.021 9 C -0.172 4.172 10 C -0.055 4.055 11 C -0.193 4.193 12 C 0.166 3.834 13 O -0.213 6.213 14 C -0.390 4.390 15 H 0.108 0.892 16 C 0.064 3.936 17 N -0.876 5.876 18 Si 0.906 3.094 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.259 1.259 22 C -0.222 4.222 23 C -0.051 4.051 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.379 0.621 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.280 0.720 37 H 0.135 0.865 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.538 -6.607 -20.833 23.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.094 4.094 3 H 0.104 0.896 4 C 0.005 3.995 5 O -0.376 6.376 6 C -0.241 4.241 7 S -0.019 6.019 8 C -0.168 4.168 9 C -0.174 4.174 10 C -0.075 4.075 11 C -0.213 4.213 12 C 0.112 3.888 13 O -0.118 6.118 14 C -0.466 4.466 15 H 0.125 0.875 16 C -0.140 4.140 17 N -0.514 5.514 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.183 1.183 22 C -0.241 4.241 23 C -0.071 4.071 24 H 0.088 0.912 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.225 0.775 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.090 0.910 37 H 0.153 0.847 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.669 -5.086 -20.021 22.034 hybrid contribution 1.180 -1.152 -0.021 1.649 sum 8.849 -6.238 -20.042 22.779 Atomic orbital electron populations 1.21829 0.93678 1.02019 1.02766 1.20828 0.97572 1.00401 0.90605 0.89594 1.22204 0.97839 0.94055 0.85413 1.86486 1.81567 1.53256 1.16286 1.23351 1.03294 1.01593 0.95832 1.87394 1.76195 1.38713 0.99613 1.22081 1.02211 0.99336 0.93158 1.18648 0.98298 1.04698 0.95794 1.20479 0.98000 0.94718 0.94317 1.20183 0.98117 1.05806 0.97154 1.19166 0.93187 0.91162 0.85242 1.83570 1.36099 1.62649 1.29442 1.20796 0.90830 1.25521 1.09414 0.87500 1.24483 0.96084 0.97605 0.95800 1.69644 1.18472 1.41967 1.21281 0.86176 0.81686 0.81018 0.78020 1.19789 1.20719 1.18332 1.21256 1.02631 1.01939 0.98290 1.20642 0.94856 0.97648 0.93937 0.91225 0.92922 0.91981 0.93648 0.93519 0.77456 0.90274 0.90380 0.90239 0.90301 0.86745 0.86317 0.90951 0.84746 0.87062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.92 37.16 0.33 -1.15 16 2 C -0.07 -0.71 2.62 -90.62 -0.24 -0.95 16 3 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 4 C 0.08 0.63 6.43 37.16 0.24 0.86 16 5 O -0.57 -4.63 13.19 -35.23 -0.46 -5.09 16 6 C -0.09 -0.88 5.38 37.16 0.20 -0.68 16 7 S -0.25 -3.30 20.53 -107.50 -2.21 -5.51 16 8 C -0.02 -0.27 6.07 36.01 0.22 -0.05 16 9 C -0.17 -2.82 5.14 -104.57 -0.54 -3.36 16 10 C -0.06 -0.93 9.69 -39.61 -0.38 -1.32 16 11 C -0.19 -3.80 9.99 -39.40 -0.39 -4.19 16 12 C 0.17 3.80 6.65 -39.10 -0.26 3.54 16 13 O -0.21 -5.58 8.59 0.06 0.00 -5.58 16 14 C -0.39 -10.91 9.95 30.89 0.31 -10.60 16 15 H 0.11 3.05 5.44 -52.48 -0.29 2.76 16 16 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 17 N -0.88 -25.14 13.96 55.48 0.77 -24.36 16 18 Si 0.91 21.52 28.62 -169.99 -4.86 16.65 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.26 -6.17 7.11 56.52 0.40 -5.77 16 22 C -0.22 -4.75 9.17 -39.39 -0.36 -5.11 16 23 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 24 H 0.07 0.81 7.13 -51.93 -0.37 0.44 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.64 7.82 -51.93 -0.41 0.24 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.38 1.28 9.12 45.56 0.42 1.69 16 30 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 33 H 0.08 0.90 8.08 -51.92 -0.42 0.48 16 34 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 35 H 0.12 2.17 8.06 -52.49 -0.42 1.74 16 36 H 0.28 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.13 3.02 5.64 -52.49 -0.30 2.72 16 38 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 334.05 15.07 5.03 5.03 Total: -1.00 -30.45 334.05 -7.81 -38.26 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -4.72 Total: 3.21 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: -1.36 Total: -22.61 kcal Atomic # 7 Polarization: -25.14 SS G_CDS: 0.77 Total: -24.36 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -0.46 Total: -10.68 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.86 Total: 16.65 kcal Atomic # 16 Polarization: -3.30 SS G_CDS: -2.21 Total: -5.51 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.45 -7.81 -38.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266851797.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.603 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds