Wall clock time and date at job start Tue Mar 31 2020 05:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47223 * 2 1 4 4 C 1.53000 * 109.46918 * 239.99319 * 2 1 3 5 5 O 1.42902 * 109.46968 * 65.00242 * 4 2 1 6 6 C 1.53003 * 109.47052 * 119.99361 * 2 1 3 7 7 S 1.81395 * 109.47363 * 294.99965 * 6 2 1 8 8 C 1.81397 * 103.00047 * 179.97438 * 7 6 2 9 9 C 1.50703 * 109.46962 * 179.97438 * 8 7 6 10 10 C 1.38307 * 119.93055 * 269.72643 * 9 8 7 11 11 C 1.38099 * 120.06499 * 179.72922 * 10 9 8 12 12 C 1.38875 * 119.93479 * 0.56643 * 11 10 9 13 13 O 1.35749 * 120.07466 * 179.68689 * 12 11 10 14 14 C 1.34828 * 117.00562 * 174.49050 * 13 12 11 15 15 H 1.08006 * 119.99896 * 5.05627 * 14 13 12 16 16 C 1.38654 * 120.00458 * 185.05745 * 14 13 12 17 17 N 1.31551 * 120.00003 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99564 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47136 * 90.00393 * 18 16 14 20 20 H 1.48504 * 109.47045 * 210.00226 * 18 16 14 21 21 H 1.48499 * 109.47702 * 330.00140 * 18 16 14 22 22 C 1.38890 * 119.86009 * 359.70988 * 12 11 10 23 23 C 1.38094 * 119.92908 * 359.97438 * 22 12 11 24 24 H 1.09004 * 109.46859 * 300.00460 * 1 2 3 25 25 H 1.09001 * 109.47101 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46734 * 60.00399 * 1 2 3 27 27 H 1.09000 * 109.46739 * 184.99881 * 4 2 1 28 28 H 1.09001 * 109.47283 * 305.00020 * 4 2 1 29 29 H 0.96702 * 114.00007 * 180.02562 * 5 4 2 30 30 H 1.09001 * 109.47001 * 54.99777 * 6 2 1 31 31 H 1.09002 * 109.46893 * 174.99684 * 6 2 1 32 32 H 1.08997 * 109.47361 * 299.99680 * 8 7 6 33 33 H 1.09002 * 109.46827 * 60.00163 * 8 7 6 34 34 H 1.07996 * 119.96744 * 359.97438 * 10 9 8 35 35 H 1.08000 * 120.03516 * 180.27724 * 11 10 9 36 36 H 0.97000 * 119.99820 * 180.02562 * 17 16 14 37 37 H 1.07997 * 120.03345 * 179.97438 * 22 12 11 38 38 H 1.07997 * 119.96863 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 1.6620 0.0165 -2.4130 6 6 2.0400 -0.7211 1.2493 7 16 1.5602 0.2158 2.7266 8 6 2.2418 -0.7802 4.0808 9 6 1.9221 -0.1224 5.3984 10 6 2.8030 0.7936 5.9441 11 6 2.5101 1.4023 7.1486 12 6 1.3353 1.0851 7.8179 13 8 1.0477 1.6769 9.0052 14 6 -0.1588 1.4113 9.5453 15 1 -0.8132 0.6908 9.0771 16 6 -0.5595 2.0630 10.7017 17 7 -1.7365 1.8034 11.2288 18 14 0.5727 3.3085 11.5117 19 1 0.3031 4.6583 10.9545 20 1 0.3287 3.3200 12.9765 21 1 1.9862 2.9375 11.2483 22 6 0.4555 0.1605 7.2700 23 6 0.7509 -0.4399 6.0620 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 -0.8900 27 1 3.1263 -0.7996 -1.2055 28 1 1.6054 -1.7200 -1.2950 29 1 1.9525 -0.3836 -3.2441 30 1 1.6054 -1.7197 1.2954 31 1 3.1264 -0.7994 1.2056 32 1 1.8017 -1.7771 4.0558 33 1 3.3230 -0.8573 3.9665 34 1 3.7189 1.0361 5.4258 35 1 3.1962 2.1209 7.5721 36 1 -2.0169 2.2596 12.0376 37 1 -0.4587 -0.0886 7.7883 38 1 0.0674 -1.1592 5.6357 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266851797.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:53 Heat of formation + Delta-G solvation = -89.182183 kcal Electronic energy + Delta-G solvation = -18629.632925 eV Core-core repulsion = 15562.725511 eV Total energy + Delta-G solvation = -3066.907414 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.91741 -38.59538 -38.49687 -35.39226 -34.53973 -32.85016 -31.84903 -28.58392 -27.94372 -26.99099 -26.35206 -23.73431 -22.24792 -21.22147 -19.84528 -19.13938 -18.41438 -17.15865 -16.71661 -16.56472 -16.30024 -15.89645 -15.78917 -15.64875 -15.25744 -14.96754 -14.53691 -14.36187 -14.14887 -14.11130 -13.88972 -13.48521 -13.24600 -12.98512 -12.57470 -12.46805 -12.39432 -12.20068 -12.04659 -11.92748 -11.70293 -11.30910 -10.93222 -10.86739 -10.74404 -9.84447 -8.98580 -8.56836 -8.51476 -6.24085 0.19651 0.54483 1.08759 1.31112 1.35975 1.51619 1.78137 2.27214 2.77866 3.03205 3.16300 3.33985 3.80688 3.84614 3.94088 4.00384 4.12905 4.20166 4.32029 4.42239 4.52679 4.54190 4.59607 4.62859 4.70701 4.75044 4.88139 4.94017 5.03819 5.21176 5.25853 5.33643 5.37179 5.53325 5.68611 5.77043 5.87649 6.19273 6.82538 6.93511 7.55700 8.60025 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.040175 B = 0.002738 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.780128 B =10223.855961 C =10414.731340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.076 4.076 3 H 0.067 0.933 4 C 0.087 3.913 5 O -0.594 6.594 6 C -0.072 4.072 7 S -0.300 6.300 8 C -0.015 4.015 9 C -0.147 4.147 10 C -0.050 4.050 11 C -0.192 4.192 12 C 0.125 3.875 13 O -0.242 6.242 14 C -0.401 4.401 15 H 0.081 0.919 16 C 0.010 3.990 17 N -0.922 5.922 18 Si 0.971 3.029 19 H -0.266 1.266 20 H -0.266 1.266 21 H -0.262 1.262 22 C -0.238 4.238 23 C -0.055 4.055 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.398 0.602 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.155 0.845 35 H 0.132 0.868 36 H 0.285 0.715 37 H 0.109 0.891 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.314 -7.563 -23.754 27.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.096 4.096 3 H 0.085 0.915 4 C 0.008 3.992 5 O -0.403 6.403 6 C -0.220 4.220 7 S -0.071 6.071 8 C -0.162 4.162 9 C -0.149 4.149 10 C -0.069 4.069 11 C -0.212 4.212 12 C 0.075 3.925 13 O -0.150 6.150 14 C -0.477 4.477 15 H 0.099 0.901 16 C -0.189 4.189 17 N -0.562 5.562 18 Si 0.793 3.207 19 H -0.191 1.191 20 H -0.191 1.191 21 H -0.186 1.186 22 C -0.257 4.257 23 C -0.075 4.075 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.248 0.752 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.125 0.875 34 H 0.172 0.828 35 H 0.149 0.851 36 H 0.095 0.905 37 H 0.127 0.873 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.467 -6.068 -22.986 25.976 hybrid contribution 0.417 -1.026 0.410 1.182 sum 10.885 -7.094 -22.576 26.047 Atomic orbital electron populations 1.21782 0.94570 1.02242 1.01428 1.20818 0.96825 0.99879 0.92029 0.91454 1.22169 0.98804 0.94025 0.84181 1.86433 1.82047 1.54241 1.17559 1.23341 1.04555 1.01203 0.92936 1.87649 1.76885 1.40192 1.02338 1.22083 1.04122 0.99477 0.90554 1.19122 0.96487 1.02558 0.96706 1.20945 0.99329 0.93603 0.93072 1.20515 0.96904 1.05961 0.97775 1.19715 0.95037 0.92342 0.85390 1.83514 1.35232 1.64711 1.31500 1.20716 0.91663 1.25402 1.09905 0.90120 1.25301 0.97615 0.99596 0.96368 1.69727 1.20226 1.43921 1.22370 0.85208 0.79281 0.78511 0.77662 1.19144 1.19095 1.18584 1.21262 1.01928 1.02767 0.99769 1.20906 0.96143 0.97734 0.92680 0.93182 0.91886 0.92681 0.91980 0.92007 0.75151 0.88664 0.88330 0.88368 0.87512 0.82756 0.85056 0.90514 0.87279 0.84789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 8.92 71.98 0.64 -2.02 16 2 C -0.08 -1.23 2.62 -10.79 -0.03 -1.26 16 3 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 4 C 0.09 0.98 6.43 71.98 0.46 1.45 16 5 O -0.59 -8.07 13.19 -148.98 -1.97 -10.04 16 6 C -0.07 -1.07 5.38 71.98 0.39 -0.68 16 7 S -0.30 -6.99 20.53 -56.49 -1.16 -8.15 16 8 C -0.02 -0.33 6.07 71.24 0.43 0.10 16 9 C -0.15 -4.36 5.14 -19.83 -0.10 -4.46 16 10 C -0.05 -1.52 9.69 22.25 0.22 -1.31 16 11 C -0.19 -7.35 9.99 22.39 0.22 -7.12 16 12 C 0.13 5.90 6.65 22.58 0.15 6.05 16 13 O -0.24 -13.27 8.59 -22.71 -0.19 -13.47 16 14 C -0.40 -23.83 9.95 67.92 0.68 -23.16 16 15 H 0.08 5.03 5.44 -2.91 -0.02 5.02 16 16 C 0.01 0.57 5.49 84.83 0.47 1.04 16 17 N -0.92 -55.46 13.96 21.61 0.30 -55.16 16 18 Si 0.97 45.71 28.62 68.60 1.96 47.67 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 21 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 22 C -0.24 -10.57 9.17 22.39 0.21 -10.37 16 23 C -0.05 -1.92 9.69 22.25 0.22 -1.70 16 24 H 0.05 1.11 7.13 -2.38 -0.02 1.10 16 25 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.05 1.08 7.82 -2.39 -0.02 1.06 16 27 H 0.06 0.50 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.40 1.57 9.12 -74.06 -0.68 0.90 16 30 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.10 1.80 8.08 -2.39 -0.02 1.78 16 33 H 0.11 1.77 8.08 -2.39 -0.02 1.75 16 34 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 35 H 0.13 4.61 8.06 -2.91 -0.02 4.58 16 36 H 0.29 15.71 8.31 -92.71 -0.77 14.94 16 37 H 0.11 5.34 5.64 -2.91 -0.02 5.32 16 38 H 0.13 4.01 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -70.25 334.05 3.27 -66.98 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.38 Total: 15.61 kcal Atomic # 6 Polarization: -47.39 SS G_CDS: 3.95 Total: -43.45 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: 0.30 Total: -55.16 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -2.16 Total: -23.50 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.96 Total: 47.67 kcal Atomic # 16 Polarization: -6.99 SS G_CDS: -1.16 Total: -8.15 kcal Total: -70.25 3.27 -66.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266851797.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.200 kcal (2) G-P(sol) polarization free energy of solvation -70.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds