Wall clock time and date at job start Tue Mar 31 2020 05:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.31618 * 117.84134 * 282.07991 * 3 2 1 5 5 C 1.49954 * 123.34305 * 180.61828 * 4 3 2 6 6 N 1.46995 * 109.36984 * 349.30094 * 5 4 3 7 7 C 1.34775 * 121.32339 * 223.24137 * 6 5 4 8 8 O 1.21544 * 119.99695 * 184.08342 * 7 6 5 9 9 C 1.47890 * 120.00219 * 4.08309 * 7 6 5 10 10 C 1.39915 * 120.02339 * 136.70489 * 9 7 6 11 11 C 1.38325 * 120.35871 * 180.02562 * 10 9 7 12 12 C 1.37759 * 120.41214 * 0.27638 * 11 10 9 13 13 C 1.40752 * 120.03587 * 359.49759 * 12 11 10 14 14 C 1.41435 * 120.17930 * 180.27267 * 13 12 11 15 15 H 1.07997 * 120.00370 * 205.35907 * 14 13 12 16 16 C 1.39939 * 119.99717 * 25.35548 * 14 13 12 17 17 N 1.30831 * 119.99878 * 16.79833 * 16 14 13 18 18 Si 1.86804 * 119.99980 * 196.79889 * 16 14 13 19 19 H 1.48497 * 109.47072 * 89.99792 * 18 16 14 20 20 H 1.48502 * 109.47142 * 210.00026 * 18 16 14 21 21 H 1.48497 * 109.46800 * 329.99772 * 18 16 14 22 22 C 1.38996 * 120.02173 * 316.73278 * 9 7 6 23 23 C 1.47303 * 117.34856 * 42.97146 * 6 5 4 24 24 C 1.49993 * 117.84285 * 102.10101 * 3 2 1 25 25 H 1.07994 * 118.32304 * 0.85040 * 4 3 2 26 26 H 1.09000 * 109.49615 * 229.28767 * 5 4 3 27 27 H 1.08994 * 109.33759 * 109.22294 * 5 4 3 28 28 H 1.07998 * 119.82044 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.79650 * 179.97438 * 11 10 9 30 30 H 1.07998 * 119.98246 * 179.74616 * 12 11 10 31 31 H 0.96999 * 119.99740 * 180.02562 * 17 16 14 32 32 H 1.07996 * 120.20605 * 359.97438 * 22 9 7 33 33 H 1.09001 * 109.76106 * 57.47566 * 23 6 5 34 34 H 1.09003 * 109.76034 * 178.23720 * 23 6 5 35 35 H 1.08998 * 109.31248 * 40.70025 * 24 3 2 36 36 H 1.09000 * 109.31337 * 281.27646 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.1828 -0.2426 1.1381 5 6 4.6754 -0.2589 1.2815 6 7 5.2937 -0.2238 -0.0516 7 6 6.3430 -1.0121 -0.3583 8 8 6.8826 -0.9108 -1.4426 9 6 6.8378 -2.0001 0.6246 10 6 7.1756 -3.2926 0.2086 11 6 7.6386 -4.2224 1.1221 12 6 7.7670 -3.8888 2.4525 13 6 7.4366 -2.5921 2.8888 14 6 7.5728 -2.2446 4.2530 15 1 6.9714 -1.4507 4.6708 16 6 8.4867 -2.9296 5.0616 17 7 9.4345 -3.6468 4.5148 18 14 8.3535 -2.8199 6.9216 19 1 7.4754 -3.9087 7.4201 20 1 9.7039 -2.9583 7.5237 21 1 7.7753 -1.5054 7.2997 22 6 6.9669 -1.6456 1.9624 23 6 4.7170 0.7028 -1.0409 24 6 3.2684 0.2790 -1.2968 25 1 2.5817 -0.4444 2.0122 26 1 4.9811 -1.1670 1.8010 27 1 4.9925 0.6133 1.8532 28 1 7.0744 -3.5657 -0.8313 29 1 7.8963 -5.2176 0.7911 30 1 8.1253 -4.6215 3.1605 31 1 10.0678 -4.1219 5.0753 32 1 6.7073 -0.6492 2.2879 33 1 4.7397 1.7201 -0.6501 34 1 5.2856 0.6512 -1.9694 35 1 2.7469 1.0778 -1.8240 36 1 3.2593 -0.6209 -1.9118 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272656702.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:01 Heat of formation + Delta-G solvation = 32.551721 kcal Electronic energy + Delta-G solvation = -20914.810191 eV Core-core repulsion = 17750.030355 eV Total energy + Delta-G solvation = -3164.779836 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.13205 -38.05484 -37.10448 -36.20187 -33.80330 -33.04782 -31.59549 -30.03741 -29.58071 -26.49626 -25.42861 -24.01209 -22.40750 -20.91091 -20.46481 -19.40236 -17.94419 -16.64143 -16.04656 -15.61188 -15.41881 -15.31584 -14.82806 -14.44969 -14.14969 -13.76242 -13.66009 -13.31978 -13.05373 -12.97361 -12.73601 -12.58996 -12.19938 -12.16486 -11.84622 -11.60369 -11.32008 -11.24801 -11.05333 -10.72910 -10.58264 -10.34653 -9.63143 -9.33431 -9.27363 -9.18235 -8.56010 -7.69225 -7.58839 -6.89835 -4.53104 1.15863 2.22004 2.56637 2.64806 3.00261 3.02539 3.06065 3.13060 3.24440 3.49960 3.79765 3.82519 4.48595 4.54300 4.86576 5.00576 5.07687 5.22858 5.36744 5.45102 5.53991 5.72776 5.75037 5.87199 6.02418 6.10217 6.29403 6.32690 6.59106 6.67372 6.82959 6.94446 7.08438 7.26006 7.37946 7.51917 7.66052 7.80092 7.85583 8.01310 8.41655 8.60120 8.70446 8.73719 10.05490 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.018340 B = 0.004625 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.309756 B = 6052.005670 C = 6979.689344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C 0.250 3.750 3 C -0.066 4.066 4 C -0.078 4.078 5 C 0.121 3.879 6 N -0.618 5.618 7 C 0.576 3.424 8 O -0.548 6.548 9 C -0.111 4.111 10 C -0.182 4.182 11 C -0.111 4.111 12 C -0.139 4.139 13 C 0.104 3.896 14 C -0.463 4.463 15 H 0.080 0.920 16 C 0.076 3.924 17 N -0.793 5.793 18 Si 0.909 3.091 19 H -0.267 1.267 20 H -0.278 1.278 21 H -0.262 1.262 22 C -0.202 4.202 23 C 0.114 3.886 24 C -0.086 4.086 25 H 0.131 0.869 26 H 0.136 0.864 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.122 0.878 31 H 0.283 0.717 32 H 0.104 0.896 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.876 5.294 -2.729 9.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.110 5.110 2 C -0.065 4.065 3 C -0.070 4.070 4 C -0.101 4.101 5 C -0.001 4.001 6 N -0.352 5.352 7 C 0.368 3.632 8 O -0.426 6.426 9 C -0.113 4.113 10 C -0.202 4.202 11 C -0.129 4.129 12 C -0.159 4.159 13 C 0.102 3.898 14 C -0.493 4.493 15 H 0.099 0.901 16 C -0.142 4.142 17 N -0.418 5.418 18 Si 0.734 3.266 19 H -0.192 1.192 20 H -0.203 1.203 21 H -0.186 1.186 22 C -0.222 4.222 23 C -0.009 4.009 24 C -0.125 4.125 25 H 0.149 0.851 26 H 0.153 0.847 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.140 0.860 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.104 0.896 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.108 5.215 -3.274 10.181 hybrid contribution 0.394 -0.010 0.937 1.017 sum -7.715 5.204 -2.337 9.595 Atomic orbital electron populations 1.81222 1.12440 1.09379 1.07915 1.26379 0.93314 0.93407 0.93420 1.17205 0.83811 1.08383 0.97556 1.23266 0.97663 0.92143 0.97040 1.21154 0.87631 1.06000 0.85351 1.48078 1.32769 1.41255 1.13123 1.18926 0.78091 0.79323 0.86833 1.90686 1.57408 1.69546 1.24911 1.19232 1.05129 0.93972 0.93008 1.20342 1.08624 0.93224 0.98027 1.20675 1.00406 0.97692 0.94136 1.21559 1.02917 0.96976 0.94448 1.17520 0.88950 0.90521 0.92809 1.19554 1.19192 1.16799 0.93732 0.90140 1.25902 0.93519 0.93335 1.01443 1.69797 1.10569 1.23252 1.38165 0.86291 0.78480 0.79953 0.81919 1.19231 1.20307 1.18552 1.21170 1.11363 0.98717 0.90958 1.21571 0.91991 0.92701 0.94644 1.20650 0.95437 1.03042 0.93409 0.85143 0.84699 0.88883 0.88582 0.88613 0.86031 0.90649 0.87766 0.90794 0.88100 0.89562 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.14 18.54 41.84 0.78 -5.36 16 2 C 0.25 2.98 15.04 -22.47 -0.34 2.64 16 3 C -0.07 -0.68 5.70 -104.90 -0.60 -1.28 16 4 C -0.08 -0.78 9.56 -36.53 -0.35 -1.13 16 5 C 0.12 1.45 5.05 -5.28 -0.03 1.42 16 6 N -0.62 -8.83 2.97 -175.49 -0.52 -9.35 16 7 C 0.58 10.86 7.34 -12.31 -0.09 10.77 16 8 O -0.55 -11.75 16.45 5.33 0.09 -11.67 16 9 C -0.11 -2.29 5.20 -105.04 -0.55 -2.83 16 10 C -0.18 -3.89 9.67 -38.92 -0.38 -4.27 16 11 C -0.11 -2.39 10.01 -39.72 -0.40 -2.79 16 12 C -0.14 -3.28 8.68 -38.81 -0.34 -3.62 16 13 C 0.10 2.45 5.56 -106.87 -0.59 1.86 16 14 C -0.46 -10.89 9.05 -37.73 -0.34 -11.23 16 15 H 0.08 1.77 7.90 -52.49 -0.41 1.35 16 16 C 0.08 1.75 5.15 -17.34 -0.09 1.66 16 17 N -0.79 -19.02 10.95 55.55 0.61 -18.41 16 18 Si 0.91 17.12 29.59 -169.99 -5.03 12.09 16 19 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 20 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 21 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 22 C -0.20 -4.22 7.14 -38.44 -0.27 -4.50 16 23 C 0.11 1.27 6.49 -3.56 -0.02 1.24 16 24 C -0.09 -0.83 5.93 -28.18 -0.17 -0.99 16 25 H 0.13 1.10 7.94 -52.49 -0.42 0.68 16 26 H 0.14 1.90 4.86 -51.93 -0.25 1.64 16 27 H 0.09 0.96 7.99 -51.93 -0.41 0.54 16 28 H 0.10 1.97 8.06 -52.49 -0.42 1.54 16 29 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 30 H 0.12 2.96 6.17 -52.49 -0.32 2.64 16 31 H 0.28 6.19 8.30 -40.82 -0.34 5.85 16 32 H 0.10 1.94 6.31 -52.49 -0.33 1.61 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.10 1.23 7.07 -51.93 -0.37 0.86 16 35 H 0.09 0.65 8.12 -51.93 -0.42 0.23 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 312.44 15.07 4.71 4.71 Total: -1.00 -28.12 312.44 -7.69 -35.80 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -3.77 Total: 5.24 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -4.55 Total: -13.06 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.86 Total: -33.12 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.12 -7.69 -35.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272656702.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.356 kcal (2) G-P(sol) polarization free energy of solvation -28.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds