Wall clock time and date at job start Tue Mar 31 2020 05:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.31618 * 117.84134 * 282.07991 * 3 2 1 5 5 C 1.49954 * 123.34305 * 180.61828 * 4 3 2 6 6 N 1.46995 * 109.36984 * 349.30094 * 5 4 3 7 7 C 1.34775 * 121.32339 * 223.24137 * 6 5 4 8 8 O 1.21544 * 119.99695 * 184.08342 * 7 6 5 9 9 C 1.47890 * 120.00219 * 4.08309 * 7 6 5 10 10 C 1.39915 * 120.02339 * 136.70489 * 9 7 6 11 11 C 1.38325 * 120.35871 * 180.02562 * 10 9 7 12 12 C 1.37759 * 120.41214 * 0.27638 * 11 10 9 13 13 C 1.40752 * 120.03587 * 359.49759 * 12 11 10 14 14 C 1.41435 * 120.17930 * 180.27267 * 13 12 11 15 15 H 1.07997 * 120.00370 * 205.35907 * 14 13 12 16 16 C 1.39939 * 119.99717 * 25.35548 * 14 13 12 17 17 N 1.30831 * 119.99878 * 16.79833 * 16 14 13 18 18 Si 1.86804 * 119.99980 * 196.79889 * 16 14 13 19 19 H 1.48497 * 109.47072 * 89.99792 * 18 16 14 20 20 H 1.48502 * 109.47142 * 210.00026 * 18 16 14 21 21 H 1.48497 * 109.46800 * 329.99772 * 18 16 14 22 22 C 1.38996 * 120.02173 * 316.73278 * 9 7 6 23 23 C 1.47303 * 117.34856 * 42.97146 * 6 5 4 24 24 C 1.49993 * 117.84285 * 102.10101 * 3 2 1 25 25 H 1.07994 * 118.32304 * 0.85040 * 4 3 2 26 26 H 1.09000 * 109.49615 * 229.28767 * 5 4 3 27 27 H 1.08994 * 109.33759 * 109.22294 * 5 4 3 28 28 H 1.07998 * 119.82044 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.79650 * 179.97438 * 11 10 9 30 30 H 1.07998 * 119.98246 * 179.74616 * 12 11 10 31 31 H 0.96999 * 119.99740 * 180.02562 * 17 16 14 32 32 H 1.07996 * 120.20605 * 359.97438 * 22 9 7 33 33 H 1.09001 * 109.76106 * 57.47566 * 23 6 5 34 34 H 1.09003 * 109.76034 * 178.23720 * 23 6 5 35 35 H 1.08998 * 109.31248 * 40.70025 * 24 3 2 36 36 H 1.09000 * 109.31337 * 281.27646 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.1828 -0.2426 1.1381 5 6 4.6754 -0.2589 1.2815 6 7 5.2937 -0.2238 -0.0516 7 6 6.3430 -1.0121 -0.3583 8 8 6.8826 -0.9108 -1.4426 9 6 6.8378 -2.0001 0.6246 10 6 7.1756 -3.2926 0.2086 11 6 7.6386 -4.2224 1.1221 12 6 7.7670 -3.8888 2.4525 13 6 7.4366 -2.5921 2.8888 14 6 7.5728 -2.2446 4.2530 15 1 6.9714 -1.4507 4.6708 16 6 8.4867 -2.9296 5.0616 17 7 9.4345 -3.6468 4.5148 18 14 8.3535 -2.8199 6.9216 19 1 7.4754 -3.9087 7.4201 20 1 9.7039 -2.9583 7.5237 21 1 7.7753 -1.5054 7.2997 22 6 6.9669 -1.6456 1.9624 23 6 4.7170 0.7028 -1.0409 24 6 3.2684 0.2790 -1.2968 25 1 2.5817 -0.4444 2.0122 26 1 4.9811 -1.1670 1.8010 27 1 4.9925 0.6133 1.8532 28 1 7.0744 -3.5657 -0.8313 29 1 7.8963 -5.2176 0.7911 30 1 8.1253 -4.6215 3.1605 31 1 10.0678 -4.1219 5.0753 32 1 6.7073 -0.6492 2.2879 33 1 4.7397 1.7201 -0.6501 34 1 5.2856 0.6512 -1.9694 35 1 2.7469 1.0778 -1.8240 36 1 3.2593 -0.6209 -1.9118 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272656702.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:00 Heat of formation + Delta-G solvation = 18.495673 kcal Electronic energy + Delta-G solvation = -20915.419707 eV Core-core repulsion = 17750.030355 eV Total energy + Delta-G solvation = -3165.389352 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.40277 -39.31165 -38.62641 -37.31393 -35.49575 -34.18915 -32.61077 -31.75883 -31.06944 -27.62852 -27.14935 -25.02690 -23.81202 -22.55390 -21.72336 -20.59676 -19.34993 -18.04452 -17.41527 -16.89946 -16.79999 -16.59595 -16.26479 -15.49847 -15.46186 -15.06705 -14.78291 -14.60118 -14.43750 -14.18377 -14.07916 -13.82049 -13.51347 -13.23677 -13.11204 -12.93629 -12.81622 -12.67883 -12.33177 -12.19437 -11.95412 -11.94800 -11.31055 -11.02345 -10.76150 -10.12677 -9.72493 -9.38934 -9.30027 -8.59835 -6.30946 0.29719 0.58150 0.97977 1.46711 1.54146 1.58422 1.62917 1.87789 2.07547 2.25662 2.33316 2.77867 2.85664 3.62071 3.69943 3.89109 3.98528 4.15906 4.37435 4.44238 4.51659 4.61258 4.62703 4.80414 4.87220 4.99955 5.01648 5.08346 5.18266 5.23322 5.37705 5.45955 5.48990 5.63467 5.85293 6.05438 6.08766 6.25861 6.38498 6.45831 6.67287 6.94886 7.00165 7.19083 8.37695 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.018340 B = 0.004625 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.309756 B = 6052.005670 C = 6979.689344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.273 3.727 3 C -0.064 4.064 4 C -0.067 4.067 5 C 0.118 3.882 6 N -0.609 5.609 7 C 0.574 3.426 8 O -0.581 6.581 9 C -0.114 4.114 10 C -0.195 4.195 11 C -0.112 4.112 12 C -0.166 4.166 13 C 0.079 3.921 14 C -0.489 4.489 15 H 0.091 0.909 16 C 0.036 3.964 17 N -0.829 5.829 18 Si 0.979 3.021 19 H -0.265 1.265 20 H -0.277 1.277 21 H -0.252 1.252 22 C -0.191 4.191 23 C 0.111 3.889 24 C -0.081 4.081 25 H 0.151 0.849 26 H 0.116 0.884 27 H 0.119 0.881 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.287 0.713 32 H 0.127 0.873 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.035 6.925 -2.111 10.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.042 4.042 3 C -0.068 4.068 4 C -0.090 4.090 5 C -0.004 4.004 6 N -0.341 5.341 7 C 0.365 3.635 8 O -0.462 6.462 9 C -0.117 4.117 10 C -0.215 4.215 11 C -0.130 4.130 12 C -0.186 4.186 13 C 0.077 3.923 14 C -0.518 4.518 15 H 0.109 0.891 16 C -0.179 4.179 17 N -0.455 5.455 18 Si 0.800 3.200 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.176 1.176 22 C -0.210 4.210 23 C -0.011 4.011 24 C -0.120 4.120 25 H 0.168 0.832 26 H 0.133 0.867 27 H 0.137 0.863 28 H 0.120 0.880 29 H 0.131 0.869 30 H 0.123 0.877 31 H 0.098 0.902 32 H 0.145 0.855 33 H 0.122 0.878 34 H 0.108 0.892 35 H 0.131 0.869 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.311 6.870 -2.653 11.871 hybrid contribution 0.731 -0.484 0.663 1.099 sum -8.581 6.386 -1.990 10.880 Atomic orbital electron populations 1.81259 1.13662 1.10914 1.09213 1.26468 0.93280 0.92187 0.92217 1.17203 0.82923 1.08777 0.97912 1.23237 0.96488 0.91441 0.97820 1.21252 0.88734 1.06211 0.84165 1.48093 1.31241 1.40133 1.14624 1.18609 0.79241 0.79715 0.85902 1.90670 1.58963 1.70751 1.25856 1.19511 1.04345 0.94330 0.93535 1.20543 1.08849 0.93806 0.98281 1.20859 0.99839 0.98710 0.93594 1.21520 1.04899 0.97202 0.94959 1.17862 0.89697 0.91049 0.93735 1.19877 1.19893 1.17786 0.94226 0.89103 1.26724 0.92781 0.92642 1.05759 1.69871 1.11437 1.24262 1.39891 0.85234 0.78300 0.80182 0.76246 1.18984 1.20241 1.17576 1.21360 1.09834 0.99195 0.90643 1.21837 0.92330 0.93310 0.93580 1.20630 0.94413 1.03763 0.93173 0.83183 0.86662 0.86311 0.87989 0.86876 0.87668 0.90246 0.85484 0.87844 0.89187 0.86894 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -12.60 18.54 19.00 0.35 -12.24 16 2 C 0.27 5.82 15.04 88.33 1.33 7.14 16 3 C -0.06 -1.12 5.70 -19.46 -0.11 -1.24 16 4 C -0.07 -1.12 9.56 24.83 0.24 -0.88 16 5 C 0.12 2.48 5.05 85.31 0.43 2.91 16 6 N -0.61 -16.01 2.97 -827.40 -2.45 -18.46 16 7 C 0.57 21.06 7.34 86.80 0.64 21.69 16 8 O -0.58 -24.69 16.45 -3.85 -0.06 -24.75 16 9 C -0.11 -4.68 5.20 -20.13 -0.10 -4.79 16 10 C -0.19 -8.37 9.67 22.70 0.22 -8.15 16 11 C -0.11 -4.92 10.01 22.18 0.22 -4.70 16 12 C -0.17 -8.03 8.68 22.77 0.20 -7.83 16 13 C 0.08 3.74 5.56 -21.32 -0.12 3.62 16 14 C -0.49 -22.94 9.05 23.47 0.21 -22.73 16 15 H 0.09 3.91 7.90 -2.91 -0.02 3.89 16 16 C 0.04 1.64 5.15 85.25 0.44 2.08 16 17 N -0.83 -40.53 10.95 21.83 0.24 -40.29 16 18 Si 0.98 34.69 29.59 68.60 2.03 36.72 16 19 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 20 H -0.28 -9.70 7.11 99.48 0.71 -8.99 16 21 H -0.25 -8.48 7.11 99.48 0.71 -7.77 16 22 C -0.19 -7.85 7.14 23.01 0.16 -7.69 16 23 C 0.11 2.15 6.49 86.25 0.56 2.71 16 24 C -0.08 -1.30 5.93 29.65 0.18 -1.13 16 25 H 0.15 2.00 7.94 -2.91 -0.02 1.98 16 26 H 0.12 3.02 4.86 -2.39 -0.01 3.00 16 27 H 0.12 1.97 7.99 -2.39 -0.02 1.96 16 28 H 0.10 4.19 8.06 -2.91 -0.02 4.17 16 29 H 0.11 4.42 8.06 -2.91 -0.02 4.39 16 30 H 0.11 5.36 6.17 -2.91 -0.02 5.34 16 31 H 0.29 12.83 8.30 -92.71 -0.77 12.06 16 32 H 0.13 4.51 6.31 -2.91 -0.02 4.49 16 33 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.09 2.02 7.07 -2.39 -0.02 2.00 16 35 H 0.11 1.27 8.12 -2.39 -0.02 1.25 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -61.59 312.44 5.71 -55.88 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 1.12 Total: 22.12 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: 4.49 Total: -18.96 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -1.86 Total: -71.00 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.06 Total: -24.75 kcal Atomic # 14 Polarization: 34.69 SS G_CDS: 2.03 Total: 36.72 kcal Total: -61.59 5.71 -55.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272656702.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.376 kcal (2) G-P(sol) polarization free energy of solvation -61.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds