Wall clock time and date at job start Tue Mar 31 2020 05:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46991 * 302.13839 * 3 2 1 5 5 N 1.46500 * 109.46704 * 180.02562 * 4 3 2 6 6 C 1.46501 * 119.99517 * 265.03875 * 5 4 3 7 7 C 1.50698 * 109.47024 * 274.32948 * 6 5 4 8 8 H 1.07999 * 120.00601 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00003 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00145 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00161 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47310 * 59.99803 * 11 9 7 13 13 H 1.48501 * 109.47440 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47309 * 299.99820 * 11 9 7 15 15 C 1.34773 * 120.00444 * 85.04458 * 5 4 3 16 16 O 1.21279 * 119.99690 * 5.59934 * 15 5 4 17 17 C 1.50693 * 120.00352 * 185.33536 * 15 5 4 18 18 H 1.09002 * 109.57562 * 26.18465 * 17 15 5 19 19 C 1.53096 * 109.57962 * 146.57388 * 17 15 5 20 20 C 1.52581 * 109.95455 * 182.82802 * 19 17 15 21 21 C 1.52584 * 110.73036 * 289.32655 * 20 19 17 22 22 C 1.53091 * 109.95675 * 70.67469 * 21 20 19 23 23 S 1.81748 * 108.84101 * 296.97926 * 22 21 20 24 24 H 1.08998 * 109.46756 * 182.14100 * 3 2 1 25 25 H 1.09000 * 109.47239 * 62.13473 * 3 2 1 26 26 H 1.08993 * 109.47181 * 60.00045 * 4 3 2 27 27 H 1.09000 * 109.46830 * 299.99884 * 4 3 2 28 28 H 1.08995 * 109.47432 * 34.33449 * 6 5 4 29 29 H 1.08999 * 109.46898 * 154.33283 * 6 5 4 30 30 H 0.96995 * 119.99875 * 180.02562 * 10 9 7 31 31 H 1.08999 * 109.39313 * 302.97799 * 19 17 15 32 32 H 1.08993 * 109.39063 * 62.68533 * 19 17 15 33 33 H 1.09001 * 109.22683 * 169.00357 * 20 19 17 34 34 H 1.09003 * 109.22872 * 49.65037 * 20 19 17 35 35 H 1.09000 * 109.38749 * 310.52901 * 21 20 19 36 36 H 1.09000 * 109.39016 * 190.82782 * 21 20 19 37 37 H 1.08997 * 109.57646 * 177.17121 * 22 21 20 38 38 H 1.09006 * 109.57477 * 56.78431 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.7665 1.2215 5 7 4.5834 -0.7653 1.2218 6 6 5.3168 -1.8933 0.6422 7 6 5.4757 -2.9751 1.6792 8 1 5.0706 -2.8366 2.6707 9 6 6.1384 -4.1419 1.3623 10 7 6.6314 -4.3110 0.1548 11 14 6.3348 -5.4832 2.6475 12 1 4.9946 -5.9416 3.0934 13 1 7.0784 -6.6266 2.0601 14 1 7.0872 -4.9480 3.8106 15 6 5.2563 0.2734 1.7552 16 8 4.6535 1.1581 2.3251 17 6 6.7584 0.3326 1.6488 18 1 7.0848 -0.2274 0.7725 19 6 7.2068 1.7912 1.5251 20 6 8.7207 1.8571 1.3464 21 6 9.4344 1.4749 2.6398 22 6 9.2685 -0.0238 2.9049 23 16 7.5034 -0.3858 3.1428 24 1 2.9708 1.0278 0.0384 25 1 2.9716 -0.4795 -0.9085 26 1 2.7555 -1.7935 1.1832 27 1 2.7548 -0.2863 2.1300 28 1 4.7640 -2.2863 -0.2110 29 1 6.3004 -1.5571 0.3143 30 1 7.0973 -5.1320 -0.0683 31 1 6.7205 2.2475 0.6629 32 1 6.9250 2.3342 2.4271 33 1 9.0052 2.8711 1.0657 34 1 9.0191 1.1693 0.5551 35 1 9.0070 2.0385 3.4690 36 1 10.4947 1.7116 2.5516 37 1 9.8220 -0.2993 3.8025 38 1 9.6456 -0.5894 2.0528 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272964345.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:07 Heat of formation + Delta-G solvation = -21.265042 kcal Electronic energy + Delta-G solvation = -20334.279147 eV Core-core repulsion = 17302.609592 eV Total energy + Delta-G solvation = -3031.669555 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.50643 -36.84996 -36.32775 -35.23158 -32.89281 -31.84958 -30.73336 -27.50005 -27.17197 -24.42732 -23.18949 -22.42828 -20.56121 -18.64088 -17.53768 -16.82939 -16.63093 -16.26257 -15.57141 -14.77055 -14.67358 -14.57972 -14.25834 -13.90465 -13.53214 -13.34583 -13.01127 -12.77938 -12.53622 -12.29721 -12.25237 -12.02211 -11.69425 -11.61622 -11.35237 -11.13346 -11.01099 -10.85535 -10.74608 -10.59578 -10.43239 -10.13662 -9.79704 -9.39256 -9.11354 -8.51262 -7.94241 -7.07494 -6.15895 -4.19283 1.83221 2.81182 2.87595 2.93368 3.29706 3.33232 3.37823 3.52275 3.59747 4.30745 4.38551 4.77679 4.83284 4.97547 5.09433 5.17463 5.19904 5.30753 5.35949 5.41031 5.63067 5.64077 5.69291 5.77513 5.90096 5.99800 6.06216 6.07731 6.14476 6.24800 6.39265 6.59574 7.07397 7.36069 7.69268 7.78880 8.02871 8.12164 8.69363 8.87880 9.46990 10.91833 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.010146 B = 0.008413 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.102062 B = 3327.464075 C = 5524.119218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.221 3.779 3 C -0.045 4.045 4 C 0.127 3.873 5 N -0.588 5.588 6 C 0.234 3.766 7 C -0.521 4.521 8 H 0.062 0.938 9 C 0.069 3.931 10 N -0.896 5.896 11 Si 0.893 3.107 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.273 1.273 15 C 0.539 3.461 16 O -0.555 6.555 17 C -0.078 4.078 18 H 0.115 0.885 19 C -0.104 4.104 20 C -0.128 4.128 21 C -0.120 4.120 22 C -0.097 4.097 23 S -0.192 6.192 24 H 0.108 0.892 25 H 0.112 0.888 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.038 0.962 29 H 0.042 0.958 30 H 0.264 0.736 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.101 0.899 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.666 9.415 -0.260 10.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.097 4.097 3 C -0.087 4.087 4 C 0.001 3.999 5 N -0.318 5.318 6 C 0.115 3.885 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.133 4.133 10 N -0.535 5.535 11 Si 0.721 3.279 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.198 1.198 15 C 0.325 3.675 16 O -0.435 6.435 17 C -0.209 4.209 18 H 0.133 0.867 19 C -0.144 4.144 20 C -0.166 4.166 21 C -0.159 4.159 22 C -0.246 4.246 23 S 0.035 5.965 24 H 0.126 0.874 25 H 0.130 0.870 26 H 0.111 0.889 27 H 0.099 0.901 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.120 0.880 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.266 9.159 0.763 9.754 hybrid contribution 1.346 -0.490 -0.481 1.511 sum 4.612 8.668 0.281 9.823 Atomic orbital electron populations 1.81179 1.13056 1.09378 1.09056 1.29077 0.95094 0.92676 0.92819 1.19779 0.81425 1.04630 1.02842 1.21123 0.81304 1.01273 0.96174 1.48167 1.05335 1.20349 1.57985 1.19613 0.92018 0.82479 0.94392 1.21295 1.36379 1.00258 0.98085 0.92000 1.24818 0.95019 0.98160 0.95312 1.69893 1.37405 1.27090 1.19084 0.86625 0.78383 0.81002 0.81936 1.20323 1.21392 1.19806 1.19564 0.87963 0.81734 0.78270 1.90621 1.69771 1.39628 1.43474 1.23325 0.96098 0.99919 1.01531 0.86696 1.21608 0.95219 0.93780 1.03770 1.21531 0.95022 1.02105 0.97894 1.21728 1.00686 0.94911 0.98600 1.23523 0.96540 0.98807 1.05707 1.87335 1.03503 1.77309 1.28312 0.87403 0.87003 0.88872 0.90107 0.94445 0.94015 0.92634 0.91075 0.89846 0.91172 0.91605 0.90745 0.91335 0.88048 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.46 18.54 42.15 0.78 -6.68 16 2 C 0.22 3.15 15.43 -20.76 -0.32 2.83 16 3 C -0.05 -0.57 5.99 -29.52 -0.18 -0.75 16 4 C 0.13 2.01 5.38 -4.04 -0.02 1.99 16 5 N -0.59 -10.84 2.47 -175.07 -0.43 -11.27 16 6 C 0.23 4.95 5.10 -5.19 -0.03 4.93 16 7 C -0.52 -12.70 9.39 -34.44 -0.32 -13.02 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.90 -23.49 13.29 55.43 0.74 -22.75 16 11 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 15 C 0.54 10.04 6.66 -10.99 -0.07 9.97 16 16 O -0.56 -11.23 15.94 5.56 0.09 -11.14 16 17 C -0.08 -1.30 2.34 -27.84 -0.07 -1.37 16 18 H 0.12 1.98 5.78 -51.93 -0.30 1.68 16 19 C -0.10 -1.43 4.64 -26.90 -0.12 -1.55 16 20 C -0.13 -1.43 5.61 -27.16 -0.15 -1.58 16 21 C -0.12 -1.32 5.75 -26.90 -0.15 -1.47 16 22 C -0.10 -1.29 6.45 37.20 0.24 -1.05 16 23 S -0.19 -3.41 21.68 -107.50 -2.33 -5.74 16 24 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 25 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.09 1.49 8.03 -51.93 -0.42 1.07 16 27 H 0.08 1.34 7.50 -51.93 -0.39 0.95 16 28 H 0.04 0.81 8.10 -51.93 -0.42 0.39 16 29 H 0.04 0.92 5.52 -51.93 -0.29 0.63 16 30 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.23 7.86 -51.93 -0.41 0.82 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 35 H 0.07 0.83 8.06 -51.93 -0.42 0.42 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.08 1.13 8.14 -51.92 -0.42 0.71 16 LS Contribution 333.02 15.07 5.02 5.02 Total: -1.00 -28.64 333.02 -8.02 -36.66 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -5.56 Total: -0.02 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -1.30 Total: 0.59 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 1.09 Total: -40.70 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -2.33 Total: -5.74 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.64 -8.02 -36.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272964345.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.398 kcal (2) G-P(sol) polarization free energy of solvation -28.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds