Wall clock time and date at job start Tue Mar 31 2020 05:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.52993 * 109.47254 * 266.56231 * 3 2 1 5 5 N 1.46495 * 109.47259 * 180.02562 * 4 3 2 6 6 C 1.46510 * 119.99864 * 85.03974 * 5 4 3 7 7 C 1.50703 * 109.46807 * 95.07707 * 6 5 4 8 8 H 1.07995 * 120.00192 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99548 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00433 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99697 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47392 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47238 * 120.00022 * 11 9 7 14 14 H 1.48506 * 109.47214 * 240.00035 * 11 9 7 15 15 C 1.34774 * 120.00210 * 265.04057 * 5 4 3 16 16 O 1.21278 * 120.00203 * 5.20154 * 15 5 4 17 17 C 1.50707 * 120.00176 * 185.19178 * 15 5 4 18 18 H 1.09000 * 109.57237 * 330.37948 * 17 15 5 19 19 C 1.53096 * 109.57726 * 210.12243 * 17 15 5 20 20 C 1.52582 * 109.95506 * 177.17130 * 19 17 15 21 21 C 1.52574 * 110.72766 * 70.66903 * 20 19 17 22 22 C 1.53090 * 109.96185 * 289.32636 * 21 20 19 23 23 S 1.81748 * 109.57317 * 90.76247 * 17 15 5 24 24 H 1.08996 * 109.47010 * 26.56860 * 3 2 1 25 25 H 1.09001 * 109.46847 * 146.56455 * 3 2 1 26 26 H 1.08998 * 109.47398 * 300.00732 * 4 3 2 27 27 H 1.09001 * 109.47011 * 60.00324 * 4 3 2 28 28 H 1.08998 * 109.46810 * 215.07821 * 6 5 4 29 29 H 1.08996 * 109.47055 * 335.07641 * 6 5 4 30 30 H 0.96997 * 120.00217 * 180.02562 * 10 9 7 31 31 H 1.09006 * 109.38703 * 297.31363 * 19 17 15 32 32 H 1.08994 * 109.39237 * 57.01690 * 19 17 15 33 33 H 1.09005 * 109.22395 * 190.99277 * 20 19 17 34 34 H 1.09000 * 109.22250 * 310.38756 * 20 19 17 35 35 H 1.09006 * 109.39245 * 49.47710 * 21 20 19 36 36 H 1.09002 * 109.38835 * 169.17409 * 21 20 19 37 37 H 1.08997 * 109.58284 * 182.83662 * 22 21 20 38 38 H 1.09002 * 109.57233 * 303.21779 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1180 0.0874 1.4398 5 7 4.5830 0.0887 1.4398 6 6 5.3144 1.3445 1.2547 7 6 5.6740 1.9195 2.6005 8 1 5.3861 1.4015 3.5034 9 6 6.3695 3.1073 2.6791 10 7 6.7188 3.7389 1.5796 11 14 6.8146 3.8204 4.3472 12 1 6.3101 2.9248 5.4190 13 1 8.2907 3.9397 4.4567 14 1 6.1973 5.1632 4.4923 15 6 5.2579 -1.0654 1.6100 16 8 4.6562 -2.1168 1.6688 17 6 6.7603 -1.0495 1.7272 18 1 7.1618 -0.2084 1.1620 19 6 7.3318 -2.3581 1.1751 20 6 8.8564 -2.3226 1.2250 21 6 9.3518 -2.4101 2.6654 22 6 9.0366 -1.1082 3.4065 23 16 7.2331 -0.8938 3.4752 24 1 2.9718 -0.9183 -0.4596 25 1 2.9710 0.8584 -0.5663 26 1 2.7542 1.0063 1.8995 27 1 2.7551 -0.7704 2.0061 28 1 6.2245 1.1544 0.6858 29 1 4.6883 2.0530 0.7124 30 1 7.2084 4.5744 1.6349 31 1 6.9695 -3.1929 1.7752 32 1 7.0063 -2.4882 0.1431 33 1 9.2538 -3.1637 0.6569 34 1 9.2083 -1.3914 0.7809 35 1 8.8576 -3.2415 3.1682 36 1 10.4290 -2.5764 2.6681 37 1 9.4373 -1.1579 4.4189 38 1 9.4843 -0.2681 2.8755 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272964347.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:09 Heat of formation + Delta-G solvation = -22.463368 kcal Electronic energy + Delta-G solvation = -20415.303712 eV Core-core repulsion = 17383.582194 eV Total energy + Delta-G solvation = -3031.721518 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.48705 -36.84536 -36.29789 -35.23632 -32.90867 -31.78914 -30.70004 -27.41429 -27.20958 -24.36227 -23.26412 -22.34876 -20.49714 -18.64737 -17.53535 -16.78681 -16.56230 -16.29068 -15.56179 -14.76263 -14.61383 -14.58422 -14.22898 -13.86733 -13.47511 -13.33331 -12.96641 -12.72156 -12.55537 -12.29394 -12.21019 -12.08250 -11.70085 -11.56788 -11.31407 -11.11894 -10.95953 -10.85189 -10.72938 -10.63021 -10.41532 -10.10980 -9.75764 -9.34955 -9.09052 -8.53842 -7.94404 -6.98868 -6.15979 -4.18058 1.88061 2.82914 2.91530 2.93846 3.25871 3.34974 3.41413 3.55717 3.60693 4.32628 4.39168 4.82457 4.87484 5.00519 5.14412 5.19876 5.20989 5.31647 5.36257 5.47249 5.65030 5.71282 5.75964 5.82317 5.94349 6.01803 6.09121 6.12983 6.18778 6.22957 6.43995 6.57336 7.06703 7.35896 7.69762 7.81776 8.03213 8.09231 8.71664 8.90988 9.47930 10.91763 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.011208 B = 0.008092 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.511498 B = 3459.383541 C = 5381.126497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.221 3.779 3 C -0.045 4.045 4 C 0.126 3.874 5 N -0.589 5.589 6 C 0.233 3.767 7 C -0.518 4.518 8 H 0.069 0.931 9 C 0.067 3.933 10 N -0.898 5.898 11 Si 0.892 3.108 12 H -0.269 1.269 13 H -0.284 1.284 14 H -0.287 1.287 15 C 0.540 3.460 16 O -0.557 6.557 17 C -0.072 4.072 18 H 0.117 0.883 19 C -0.105 4.105 20 C -0.128 4.128 21 C -0.120 4.120 22 C -0.097 4.097 23 S -0.192 6.192 24 H 0.108 0.892 25 H 0.113 0.887 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.036 0.964 29 H 0.041 0.959 30 H 0.262 0.738 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.305 -8.318 -1.853 10.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.097 4.097 3 C -0.087 4.087 4 C 0.000 4.000 5 N -0.319 5.319 6 C 0.114 3.886 7 C -0.557 4.557 8 H 0.088 0.912 9 C -0.135 4.135 10 N -0.537 5.537 11 Si 0.720 3.280 12 H -0.193 1.193 13 H -0.210 1.210 14 H -0.213 1.213 15 C 0.327 3.673 16 O -0.437 6.437 17 C -0.203 4.203 18 H 0.135 0.865 19 C -0.144 4.144 20 C -0.166 4.166 21 C -0.159 4.159 22 C -0.246 4.246 23 S 0.035 5.965 24 H 0.127 0.873 25 H 0.131 0.869 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.118 0.882 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.740 -8.475 -0.978 8.960 hybrid contribution 1.679 0.649 -0.220 1.813 sum 4.419 -7.826 -1.197 9.066 Atomic orbital electron populations 1.81177 1.13076 1.09654 1.08836 1.29110 0.95123 0.92533 0.92925 1.19781 0.81323 1.05992 1.01555 1.21148 0.81345 1.04131 0.93338 1.48163 1.05222 1.09349 1.69208 1.19595 0.91915 0.79095 0.98009 1.21486 1.35557 1.06203 0.92421 0.91247 1.24819 0.95513 0.96593 0.96535 1.69920 1.39583 1.17210 1.27001 0.86512 0.78174 0.78725 0.84592 1.19331 1.21034 1.21329 1.19577 0.88174 0.83539 0.76059 1.90616 1.69807 1.31081 1.52214 1.23231 0.96410 1.02488 0.98212 0.86459 1.21611 0.94615 0.96354 1.01819 1.21529 0.95633 1.02601 0.96789 1.21726 1.01094 0.97238 0.95828 1.23517 0.96228 1.00475 1.04332 1.87137 1.05636 1.95496 1.08261 0.87348 0.86909 0.89314 0.89819 0.94589 0.94055 0.92797 0.89977 0.91121 0.91255 0.91578 0.90809 0.91410 0.88157 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.46 18.54 42.15 0.78 -6.68 16 2 C 0.22 3.14 15.43 -20.76 -0.32 2.82 16 3 C -0.05 -0.57 6.02 -29.52 -0.18 -0.75 16 4 C 0.13 1.97 5.36 -4.05 -0.02 1.95 16 5 N -0.59 -10.79 2.47 -175.06 -0.43 -11.22 16 6 C 0.23 4.86 4.90 -5.19 -0.03 4.84 16 7 C -0.52 -12.32 8.24 -34.44 -0.28 -12.60 16 8 H 0.07 1.74 7.63 -52.49 -0.40 1.34 16 9 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 10 N -0.90 -23.35 13.29 55.43 0.74 -22.62 16 11 Si 0.89 20.19 29.54 -169.99 -5.02 15.17 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.54 10.13 6.69 -10.98 -0.07 10.06 16 16 O -0.56 -11.27 15.80 5.56 0.09 -11.18 16 17 C -0.07 -1.24 2.22 -27.83 -0.06 -1.30 16 18 H 0.12 2.13 5.90 -51.93 -0.31 1.82 16 19 C -0.10 -1.48 4.59 -26.90 -0.12 -1.60 16 20 C -0.13 -1.50 5.61 -27.16 -0.15 -1.65 16 21 C -0.12 -1.36 5.75 -26.90 -0.15 -1.52 16 22 C -0.10 -1.33 6.45 37.20 0.24 -1.09 16 23 S -0.19 -3.45 20.62 -107.50 -2.22 -5.66 16 24 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 25 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.09 1.39 8.11 -51.93 -0.42 0.97 16 27 H 0.08 1.36 7.35 -51.93 -0.38 0.98 16 28 H 0.04 0.78 6.16 -51.93 -0.32 0.47 16 29 H 0.04 0.89 8.03 -51.93 -0.42 0.47 16 30 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 31 H 0.08 1.24 7.87 -51.93 -0.41 0.83 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 35 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 330.80 15.07 4.99 4.99 Total: -1.00 -28.18 330.80 -7.92 -36.10 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -5.59 Total: 0.35 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -1.25 Total: 0.76 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 1.09 Total: -40.51 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -2.22 Total: -5.66 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.18 -7.92 -36.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272964347.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.639 kcal (2) G-P(sol) polarization free energy of solvation -28.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds