Wall clock time and date at job start Tue Mar 31 2020 05:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99811 * 2 1 4 4 H 1.48501 * 109.46843 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47232 * 300.00199 * 3 2 1 6 6 H 1.48500 * 109.47115 * 60.00236 * 3 2 1 7 7 C 1.37871 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00155 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00359 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47692 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47591 * 179.97438 * 10 9 7 12 12 C 1.46899 * 111.00094 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46953 * 180.02562 * 12 11 10 14 14 C 1.33638 * 126.04034 * 89.97401 * 13 12 11 15 15 N 1.31783 * 114.50019 * 179.97438 * 14 13 12 16 16 C 1.29024 * 117.12778 * 0.02562 * 15 14 13 17 17 C 1.50695 * 124.92117 * 179.97438 * 16 15 14 18 18 H 1.09000 * 110.28058 * 194.38548 * 17 16 15 19 19 C 1.54951 * 110.30655 * 72.18975 * 17 16 15 20 20 C 1.55312 * 100.94225 * 204.64087 * 19 17 16 21 21 C 1.54380 * 102.25056 * 34.13333 * 20 19 17 22 22 O 1.43245 * 107.59000 * 338.64209 * 21 20 19 23 23 S 1.70978 * 110.16657 * 0.22351 * 16 15 14 24 24 H 0.97007 * 120.00341 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47560 * 59.99669 * 9 7 2 26 26 H 1.09005 * 109.47136 * 299.99947 * 9 7 2 27 27 H 1.09000 * 109.46797 * 59.99313 * 10 9 7 28 28 H 1.09005 * 109.46878 * 300.00217 * 10 9 7 29 29 H 1.00905 * 110.99495 * 56.04337 * 11 10 9 30 30 H 1.08995 * 109.46804 * 60.00230 * 12 11 10 31 31 H 1.09002 * 109.46913 * 300.00366 * 12 11 10 32 32 H 1.08001 * 122.75053 * 0.02562 * 14 13 12 33 33 H 1.09000 * 111.12523 * 322.56117 * 19 17 16 34 34 H 1.09000 * 111.12500 * 86.68234 * 19 17 16 35 35 H 1.08999 * 110.84840 * 275.94257 * 20 19 17 36 36 H 1.08999 * 110.84966 * 152.32055 * 20 19 17 37 37 H 1.08996 * 109.83192 * 219.13077 * 21 20 19 38 38 H 1.09002 * 109.83458 * 98.15431 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 7 1.5108 -4.9343 -0.0033 12 6 2.4353 -6.0759 -0.0049 13 6 1.6472 -7.3604 -0.0060 14 6 1.2352 -8.0291 -1.0872 15 7 0.5607 -9.1303 -0.8245 16 6 0.3803 -9.4275 0.4180 17 6 -0.3629 -10.6402 0.9159 18 1 -0.5937 -10.5332 1.9758 19 6 0.4739 -11.9214 0.6722 20 6 -0.6437 -12.9987 0.6236 21 6 -1.8118 -12.2298 -0.0301 22 8 -1.5693 -10.8308 0.1598 23 16 1.1006 -8.2425 1.4181 24 1 -0.4851 0.8401 0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6240 -2.5575 0.8880 27 1 2.8719 -3.6050 0.8872 28 1 2.8719 -3.6035 -0.8927 29 1 0.8740 -4.9838 -0.7845 30 1 3.0638 -6.0356 0.8847 31 1 3.0626 -6.0341 -0.8953 32 1 1.4391 -7.6950 -2.0937 33 1 1.0085 -11.8669 -0.2762 34 1 1.1614 -12.1045 1.4980 35 1 -0.9096 -13.3274 1.6283 36 1 -0.3413 -13.8438 0.0052 37 1 -2.7515 -12.5101 0.4459 38 1 -1.8536 -12.4564 -1.0955 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273086491.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:55 Heat of formation + Delta-G solvation = -10.073331 kcal Electronic energy + Delta-G solvation = -18739.566180 eV Core-core repulsion = 15708.381934 eV Total energy + Delta-G solvation = -3031.184246 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.21596 -39.06716 -36.18579 -33.24583 -32.52945 -31.79374 -30.20039 -28.25516 -25.89173 -24.42256 -23.16050 -22.31316 -22.00113 -20.64168 -19.22403 -18.41443 -16.75106 -16.36798 -16.28002 -15.46517 -15.24807 -14.80137 -14.70211 -14.43392 -13.89441 -13.72700 -13.48592 -13.32087 -12.64793 -12.26055 -12.20952 -12.08265 -11.83200 -11.70075 -11.34741 -11.26928 -11.02887 -10.95696 -10.55365 -10.04976 -9.96119 -9.61001 -9.50062 -9.25485 -9.12222 -8.82903 -8.37107 -7.93350 -6.00851 -4.03889 0.61855 1.26672 1.74171 2.75803 3.30637 3.37978 3.41723 3.60869 3.86805 4.20832 4.42530 4.46976 4.55969 4.71444 4.76386 4.85893 5.01685 5.16252 5.23275 5.30708 5.34886 5.35156 5.45867 5.50717 5.62741 5.73991 5.81518 6.14555 6.25614 6.32161 6.65924 6.91780 7.35862 7.68027 7.73316 7.75515 7.88374 8.05152 8.40638 9.03494 9.60100 11.10561 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.046816 B = 0.002555 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.940309 B =10957.345487 C =11177.787055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.687 5.687 12 C 0.131 3.869 13 C -0.196 4.196 14 C 0.029 3.971 15 N -0.448 5.448 16 C 0.019 3.981 17 C 0.163 3.837 18 H 0.092 0.908 19 C -0.142 4.142 20 C -0.154 4.154 21 C 0.050 3.950 22 O -0.360 6.360 23 S 0.158 5.842 24 H 0.260 0.740 25 H 0.014 0.986 26 H 0.026 0.974 27 H 0.060 0.940 28 H 0.019 0.981 29 H 0.340 0.660 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.174 0.826 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.553 -26.780 2.330 26.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.319 5.319 12 C 0.000 4.000 13 C -0.318 4.318 14 C -0.123 4.123 15 N -0.163 5.163 16 C -0.259 4.259 17 C 0.102 3.898 18 H 0.109 0.891 19 C -0.182 4.182 20 C -0.192 4.192 21 C -0.026 4.026 22 O -0.279 6.279 23 S 0.413 5.587 24 H 0.070 0.930 25 H 0.033 0.967 26 H 0.044 0.956 27 H 0.079 0.921 28 H 0.037 0.963 29 H 0.158 0.842 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.191 0.809 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.043 -26.712 3.625 26.977 hybrid contribution 0.960 1.177 -1.817 2.368 sum 2.003 -25.535 1.807 25.677 Atomic orbital electron populations 1.69984 1.06047 1.26541 1.50569 1.25012 0.94851 0.99278 0.95281 0.86519 0.80036 0.83736 0.77600 1.19768 1.21022 1.20954 1.21192 0.93008 0.90925 1.50948 0.92658 1.19076 0.94004 0.90322 0.97859 1.22207 0.97103 0.87995 0.98887 1.60684 1.19376 1.01541 1.50283 1.20292 0.92818 0.85258 1.01679 1.26088 1.07862 1.03144 0.94740 1.21731 0.98794 0.91629 1.00162 1.66138 1.14439 1.16968 1.18725 1.26771 1.05022 1.01681 0.92446 1.21288 0.84158 0.89638 0.94685 0.89071 1.23309 0.98170 0.92583 1.04096 1.23134 0.95098 0.98819 1.02154 1.23160 0.97873 0.80798 1.00816 1.88551 1.40664 1.23724 1.74968 1.83918 1.48469 1.15441 1.10850 0.92995 0.96733 0.95569 0.92121 0.96314 0.84186 0.89984 0.93279 0.80916 0.89437 0.89364 0.90211 0.89647 0.91101 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 7 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.65 5.23 -27.88 -0.15 0.50 16 10 C 0.07 1.36 5.62 -3.82 -0.02 1.34 16 11 N -0.69 -12.23 6.49 -115.06 -0.75 -12.98 16 12 C 0.13 1.86 6.22 -4.98 -0.03 1.83 16 13 C -0.20 -2.67 6.11 -35.92 -0.22 -2.89 16 14 C 0.03 0.40 11.25 -19.18 -0.22 0.18 16 15 N -0.45 -6.50 10.53 -11.87 -0.12 -6.62 16 16 C 0.02 0.24 6.33 -13.46 -0.09 0.15 16 17 C 0.16 1.69 3.96 -26.86 -0.11 1.59 16 18 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 19 C -0.14 -1.09 6.56 -24.48 -0.16 -1.25 16 20 C -0.15 -0.91 7.02 -24.78 -0.17 -1.09 16 21 C 0.05 0.41 7.79 37.88 0.30 0.71 16 22 O -0.36 -4.42 11.01 -35.23 -0.39 -4.81 16 23 S 0.16 1.94 23.18 -107.50 -2.49 -0.55 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.34 6.01 8.72 -39.29 -0.34 5.66 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.17 2.05 8.06 -52.49 -0.42 1.62 16 33 H 0.09 0.78 8.05 -51.93 -0.42 0.36 16 34 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 334.61 15.07 5.04 5.04 Total: -1.00 -32.54 334.61 -10.07 -42.61 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -5.80 Total: -0.54 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -1.28 Total: -12.49 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -0.14 Total: -45.94 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.39 Total: -4.81 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.49 Total: -0.55 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.54 -10.07 -42.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273086491.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.538 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds