Wall clock time and date at job start Tue Mar 31 2020 05:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99811 * 2 1 4 4 H 1.48501 * 109.46843 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47232 * 300.00199 * 3 2 1 6 6 H 1.48500 * 109.47115 * 60.00236 * 3 2 1 7 7 C 1.37871 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00155 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00359 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47692 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47591 * 179.97438 * 10 9 7 12 12 C 1.46899 * 111.00094 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46953 * 180.02562 * 12 11 10 14 14 C 1.33638 * 126.04034 * 89.97401 * 13 12 11 15 15 N 1.31783 * 114.50019 * 179.97438 * 14 13 12 16 16 C 1.29024 * 117.12778 * 0.02562 * 15 14 13 17 17 C 1.50695 * 124.92117 * 179.97438 * 16 15 14 18 18 H 1.09000 * 110.28058 * 194.38548 * 17 16 15 19 19 C 1.54951 * 110.30655 * 72.18975 * 17 16 15 20 20 C 1.55312 * 100.94225 * 204.64087 * 19 17 16 21 21 C 1.54380 * 102.25056 * 34.13333 * 20 19 17 22 22 O 1.43245 * 107.59000 * 338.64209 * 21 20 19 23 23 S 1.70978 * 110.16657 * 0.22351 * 16 15 14 24 24 H 0.97007 * 120.00341 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47560 * 59.99669 * 9 7 2 26 26 H 1.09005 * 109.47136 * 299.99947 * 9 7 2 27 27 H 1.09000 * 109.46797 * 59.99313 * 10 9 7 28 28 H 1.09005 * 109.46878 * 300.00217 * 10 9 7 29 29 H 1.00905 * 110.99495 * 56.04337 * 11 10 9 30 30 H 1.08995 * 109.46804 * 60.00230 * 12 11 10 31 31 H 1.09002 * 109.46913 * 300.00366 * 12 11 10 32 32 H 1.08001 * 122.75053 * 0.02562 * 14 13 12 33 33 H 1.09000 * 111.12523 * 322.56117 * 19 17 16 34 34 H 1.09000 * 111.12500 * 86.68234 * 19 17 16 35 35 H 1.08999 * 110.84840 * 275.94257 * 20 19 17 36 36 H 1.08999 * 110.84966 * 152.32055 * 20 19 17 37 37 H 1.08996 * 109.83192 * 219.13077 * 21 20 19 38 38 H 1.09002 * 109.83458 * 98.15431 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 7 1.5108 -4.9343 -0.0033 12 6 2.4353 -6.0759 -0.0049 13 6 1.6472 -7.3604 -0.0060 14 6 1.2352 -8.0291 -1.0872 15 7 0.5607 -9.1303 -0.8245 16 6 0.3803 -9.4275 0.4180 17 6 -0.3629 -10.6402 0.9159 18 1 -0.5937 -10.5332 1.9758 19 6 0.4739 -11.9214 0.6722 20 6 -0.6437 -12.9987 0.6236 21 6 -1.8118 -12.2298 -0.0301 22 8 -1.5693 -10.8308 0.1598 23 16 1.1006 -8.2425 1.4181 24 1 -0.4851 0.8401 0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6240 -2.5575 0.8880 27 1 2.8719 -3.6050 0.8872 28 1 2.8719 -3.6035 -0.8927 29 1 0.8740 -4.9838 -0.7845 30 1 3.0638 -6.0356 0.8847 31 1 3.0626 -6.0341 -0.8953 32 1 1.4391 -7.6950 -2.0937 33 1 1.0085 -11.8669 -0.2762 34 1 1.1614 -12.1045 1.4980 35 1 -0.9096 -13.3274 1.6283 36 1 -0.3413 -13.8438 0.0052 37 1 -2.7515 -12.5101 0.4459 38 1 -1.8536 -12.4564 -1.0955 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273086491.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:55 Heat of formation + Delta-G solvation = -32.774045 kcal Electronic energy + Delta-G solvation = -18740.550557 eV Core-core repulsion = 15708.381934 eV Total energy + Delta-G solvation = -3032.168622 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.10075 -39.92150 -37.65918 -35.19861 -33.37036 -32.93708 -31.47944 -29.65354 -27.07581 -25.91556 -24.47314 -23.21696 -22.57740 -22.49145 -20.19142 -19.38112 -18.51936 -17.51728 -17.09673 -16.77476 -16.39846 -16.25297 -15.95579 -15.58741 -15.09107 -14.90943 -14.40756 -14.27447 -14.13400 -13.96582 -13.50615 -13.05158 -12.86319 -12.73445 -12.68833 -12.41121 -12.31638 -12.26364 -11.91653 -11.81133 -11.45830 -11.30068 -10.74367 -10.58245 -10.54529 -10.25701 -9.85665 -9.34722 -8.20856 -6.32592 -0.39188 0.29151 0.73434 1.40770 1.41130 1.54500 1.74556 2.40402 2.87223 3.08716 3.12905 3.38065 3.58336 3.80318 3.86679 3.93374 4.11373 4.16275 4.28351 4.37939 4.48911 4.52261 4.61773 4.75953 4.79222 4.84025 4.89911 4.99248 5.05544 5.12725 5.24093 5.43390 5.64748 5.75987 5.97012 6.07393 6.21120 6.41247 6.73578 6.85337 7.37042 8.91609 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.046816 B = 0.002555 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.940309 B =10957.345487 C =11177.787055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.969 3.031 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.030 3.970 10 C 0.085 3.915 11 N -0.697 5.697 12 C 0.137 3.863 13 C -0.215 4.215 14 C 0.027 3.973 15 N -0.479 5.479 16 C 0.019 3.981 17 C 0.153 3.847 18 H 0.110 0.890 19 C -0.138 4.138 20 C -0.143 4.143 21 C 0.040 3.960 22 O -0.396 6.396 23 S 0.180 5.820 24 H 0.263 0.737 25 H -0.011 1.011 26 H -0.007 1.007 27 H 0.064 0.936 28 H 0.027 0.973 29 H 0.339 0.661 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.185 0.815 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.881 -27.813 2.962 28.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.793 3.207 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.082 0.918 9 C -0.007 4.007 10 C -0.043 4.043 11 N -0.328 5.328 12 C 0.006 3.994 13 C -0.337 4.337 14 C -0.125 4.125 15 N -0.194 5.194 16 C -0.258 4.258 17 C 0.092 3.908 18 H 0.127 0.873 19 C -0.177 4.177 20 C -0.180 4.180 21 C -0.036 4.036 22 O -0.316 6.316 23 S 0.436 5.564 24 H 0.072 0.928 25 H 0.008 0.992 26 H 0.011 0.989 27 H 0.083 0.917 28 H 0.046 0.954 29 H 0.157 0.843 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.201 0.799 33 H 0.089 0.911 34 H 0.129 0.871 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.103 0.897 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.385 -27.772 4.263 28.199 hybrid contribution 0.466 1.401 -2.009 2.493 sum 2.852 -26.372 2.255 26.621 Atomic orbital electron populations 1.70125 1.07925 1.27751 1.51556 1.26013 0.95767 1.03540 0.94686 0.85343 0.79102 0.78524 0.77720 1.18331 1.20453 1.20427 1.21644 0.93653 0.92067 1.50675 0.91793 1.18934 0.94376 0.92441 0.94999 1.21807 0.95579 0.87511 0.99448 1.60570 1.20118 1.01590 1.50528 1.20267 0.92320 0.83966 1.02810 1.26020 1.08896 1.03315 0.95490 1.21967 0.98275 0.91455 1.00852 1.66195 1.15664 1.17730 1.19769 1.27343 1.04135 1.02168 0.92195 1.21640 0.84159 0.89823 0.95209 0.87252 1.23307 0.98605 0.91698 1.04101 1.23137 0.93178 0.98329 1.03392 1.23382 0.99594 0.79492 1.01136 1.88504 1.41402 1.26185 1.75468 1.83771 1.47916 1.14778 1.09976 0.92775 0.99213 0.98873 0.91703 0.95436 0.84304 0.89228 0.91666 0.79856 0.91105 0.87085 0.88182 0.88099 0.89727 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.67 13.29 21.44 0.28 -57.38 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.97 44.37 29.54 68.60 2.03 46.40 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 7 C -0.54 -30.90 9.11 25.60 0.23 -30.67 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.03 1.61 5.23 29.85 0.16 1.76 16 10 C 0.09 3.49 5.62 86.30 0.49 3.98 16 11 N -0.70 -24.59 6.49 -517.94 -3.36 -27.95 16 12 C 0.14 3.73 6.22 85.56 0.53 4.26 16 13 C -0.22 -5.69 6.11 24.64 0.15 -5.54 16 14 C 0.03 0.72 11.25 83.66 0.94 1.66 16 15 N -0.48 -13.77 10.53 -191.45 -2.02 -15.78 16 16 C 0.02 0.47 6.33 88.52 0.56 1.03 16 17 C 0.15 2.98 3.96 30.51 0.12 3.10 16 18 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 19 C -0.14 -1.85 6.56 32.06 0.21 -1.64 16 20 C -0.14 -1.34 7.02 31.86 0.22 -1.12 16 21 C 0.04 0.61 7.79 72.45 0.56 1.17 16 22 O -0.40 -9.52 11.01 -148.98 -1.64 -11.16 16 23 S 0.18 4.23 23.18 -56.49 -1.31 2.92 16 24 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 25 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 26 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 27 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.34 12.07 8.72 -89.69 -0.78 11.29 16 30 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 32 H 0.18 4.28 8.06 -2.91 -0.02 4.26 16 33 H 0.07 1.19 8.05 -2.39 -0.02 1.18 16 34 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -70.73 334.61 -1.11 -71.84 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.27 Total: 12.78 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: 4.64 Total: -21.66 kcal Atomic # 7 Polarization: -96.03 SS G_CDS: -5.09 Total: -101.12 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -1.64 Total: -11.16 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: 4.23 SS G_CDS: -1.31 Total: 2.92 kcal Total: -70.73 -1.11 -71.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273086491.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.063 kcal (2) G-P(sol) polarization free energy of solvation -70.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds