Wall clock time and date at job start Tue Mar 31 2020 05:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33391 * 125.20248 * 2 1 4 4 C 1.38424 * 114.92283 * 180.02562 * 3 2 1 5 5 C 1.33385 * 114.92087 * 0.02562 * 4 3 2 6 6 C 1.50697 * 125.20617 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.47293 * 89.99530 * 6 5 4 8 8 C 1.46499 * 120.00136 * 270.00491 * 7 6 5 9 9 C 1.34784 * 119.99893 * 90.00297 * 7 6 5 10 10 O 1.21588 * 119.99858 * 359.97438 * 9 7 6 11 11 N 1.34773 * 119.99935 * 179.72905 * 9 7 6 12 12 C 1.46496 * 119.99973 * 180.02562 * 11 9 7 13 13 C 1.53005 * 109.47401 * 179.97438 * 12 11 9 14 14 C 1.50696 * 109.47134 * 179.97438 * 13 12 11 15 15 H 1.08004 * 120.00332 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99857 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99888 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99895 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47213 * 90.00589 * 18 16 14 20 20 H 1.48504 * 109.47159 * 210.00248 * 18 16 14 21 21 H 1.48502 * 109.47154 * 330.00339 * 18 16 14 22 22 S 1.75886 * 125.20452 * 180.31849 * 2 1 3 23 23 H 1.09007 * 109.46895 * 90.00284 * 1 2 3 24 24 H 1.09004 * 109.47067 * 209.99913 * 1 2 3 25 25 H 1.08994 * 109.47324 * 330.00282 * 1 2 3 26 26 H 1.07998 * 122.53854 * 0.02562 * 3 2 1 27 27 H 1.08003 * 122.54205 * 180.02562 * 4 3 2 28 28 H 1.08997 * 109.46951 * 329.99845 * 6 5 4 29 29 H 1.08998 * 109.47681 * 209.99898 * 6 5 4 30 30 H 1.08999 * 109.47256 * 269.99572 * 8 7 6 31 31 H 1.08998 * 109.47416 * 29.99674 * 8 7 6 32 32 H 1.09008 * 109.47058 * 150.00274 * 8 7 6 33 33 H 0.97004 * 120.00018 * 359.97438 * 11 9 7 34 34 H 1.09007 * 109.47081 * 299.99672 * 12 11 9 35 35 H 1.08997 * 109.47795 * 59.99548 * 12 11 9 36 36 H 1.09002 * 109.46321 * 299.99746 * 13 12 11 37 37 H 1.08993 * 109.47232 * 59.99541 * 13 12 11 38 38 H 0.96995 * 119.99958 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8429 -0.0006 5 6 3.9751 -0.4476 -0.0016 6 6 5.3860 -0.9770 -0.0029 7 7 5.8443 -1.1492 1.3779 8 6 6.5190 -0.0474 2.0686 9 6 5.6452 -2.3214 2.0128 10 8 5.0847 -3.2356 1.4396 11 7 6.0716 -2.4817 3.2811 12 6 5.8556 -3.7558 3.9710 13 6 6.4309 -3.6735 5.3864 14 6 6.2081 -4.9840 6.0962 15 1 5.7061 -5.7945 5.5888 16 6 6.6452 -5.1483 7.3935 17 7 7.2561 -4.1612 8.0116 18 14 6.3685 -6.7726 8.2737 19 1 7.5270 -7.6698 8.0328 20 1 6.2267 -6.5278 9.7315 21 1 5.1317 -7.4114 7.7564 22 16 2.5209 -1.4371 -0.0080 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5138 26 1 1.8668 2.0895 0.0004 27 1 4.3721 1.6351 -0.0002 28 1 6.0384 -0.2710 -0.5168 29 1 5.4133 -1.9375 -0.5172 30 1 7.5933 -0.1143 1.8965 31 1 6.1482 0.9031 1.6853 32 1 6.3177 -0.1115 3.1380 33 1 6.5222 -1.7536 3.7370 34 1 4.7869 -3.9636 4.0243 35 1 6.3541 -4.5551 3.4226 36 1 7.4996 -3.4660 5.3326 37 1 5.9327 -2.8742 5.9351 38 1 7.5633 -4.2767 8.9244 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273645334.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:40 Heat of formation + Delta-G solvation = -3.291266 kcal Electronic energy + Delta-G solvation = -19312.860164 eV Core-core repulsion = 16281.970010 eV Total energy + Delta-G solvation = -3030.890153 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.86562 -38.04393 -35.61351 -34.76974 -32.95251 -32.20586 -29.81465 -28.62425 -26.56337 -25.05066 -23.89468 -22.78891 -21.01365 -19.82048 -18.92774 -17.61163 -17.00157 -16.46284 -15.96547 -15.67343 -14.93690 -14.50322 -14.19055 -13.86949 -13.79657 -13.59658 -13.31871 -12.89748 -12.72308 -12.70640 -12.44878 -12.27401 -12.05847 -11.88498 -11.36417 -11.13318 -11.01637 -10.61521 -10.58882 -10.29884 -9.89155 -9.54006 -9.25006 -8.79277 -8.54953 -8.44581 -8.42041 -8.19351 -6.07650 -4.10087 0.90629 1.63161 2.07083 2.57342 3.10053 3.30917 3.36955 3.41745 3.57179 4.32087 4.48243 4.72400 4.78806 5.04972 5.06468 5.12348 5.29510 5.30099 5.32663 5.43341 5.52188 5.59910 5.65761 5.73392 6.07751 6.19912 6.26914 6.42628 6.46191 6.55719 6.79803 7.02862 7.14989 7.57521 7.65226 7.91619 8.26403 8.38908 8.93999 9.00024 9.54543 11.04096 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.024253 B = 0.003337 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.232537 B = 8389.215311 C = 8904.191449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.194 4.194 3 C -0.147 4.147 4 C -0.129 4.129 5 C -0.198 4.198 6 C 0.205 3.795 7 N -0.635 5.635 8 C 0.081 3.919 9 C 0.699 3.301 10 O -0.591 6.591 11 N -0.737 5.737 12 C 0.139 3.861 13 C 0.013 3.987 14 C -0.520 4.520 15 H 0.060 0.940 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.272 1.272 22 S 0.145 5.855 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.133 0.867 27 H 0.135 0.865 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.393 0.607 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.022 0.978 37 H 0.021 0.979 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.876 13.707 -16.970 22.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.312 4.312 3 C -0.177 4.177 4 C -0.161 4.161 5 C -0.317 4.317 6 C 0.080 3.920 7 N -0.373 5.373 8 C -0.063 4.063 9 C 0.401 3.599 10 O -0.469 6.469 11 N -0.392 5.392 12 C 0.017 3.983 13 C -0.024 4.024 14 C -0.559 4.559 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.724 3.276 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 S 0.410 5.590 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.151 0.849 27 H 0.152 0.848 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.228 0.772 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.473 11.466 -17.188 21.972 hybrid contribution 0.445 1.244 0.957 1.632 sum -7.028 12.710 -16.231 21.781 Atomic orbital electron populations 1.20312 0.88130 1.03094 1.02481 1.24702 1.00173 0.96969 1.09367 1.19985 0.92934 0.98979 1.05823 1.20002 0.96129 0.95596 1.04383 1.25010 0.99747 0.96720 1.10251 1.19599 0.87727 1.02032 0.82685 1.47092 1.62886 1.13087 1.14244 1.21705 0.96938 0.89907 0.97745 1.16026 0.79664 0.82253 0.81994 1.90878 1.48668 1.40693 1.66665 1.45675 1.62631 1.18459 1.12399 1.21594 1.00345 0.82038 0.94353 1.19319 0.96442 0.98119 0.88541 1.21055 1.38103 0.98576 0.98123 0.92213 1.24995 0.94996 0.96880 0.97434 1.69956 1.39260 1.31547 1.12625 0.86511 0.78744 0.83632 0.78668 1.20566 1.21191 1.19700 1.84803 0.95549 1.07574 1.71037 0.90926 0.91315 0.90781 0.84877 0.84753 0.88951 0.88818 0.92552 0.91164 0.91201 0.77218 0.92807 0.92768 0.96014 0.96044 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.38 36.00 0.37 -0.32 16 2 C -0.19 -2.19 6.51 -36.00 -0.23 -2.43 16 3 C -0.15 -1.55 10.05 -41.21 -0.41 -1.97 16 4 C -0.13 -1.38 10.05 -41.21 -0.41 -1.80 16 5 C -0.20 -2.45 6.09 -36.01 -0.22 -2.67 16 6 C 0.20 2.45 5.90 -5.20 -0.03 2.42 16 7 N -0.63 -8.71 2.86 -188.74 -0.54 -9.25 16 8 C 0.08 0.81 10.20 59.85 0.61 1.42 16 9 C 0.70 12.73 8.28 -86.91 -0.72 12.01 16 10 O -0.59 -12.68 15.92 5.29 0.08 -12.60 16 11 N -0.74 -13.66 5.42 -65.22 -0.35 -14.01 16 12 C 0.14 3.08 5.61 -4.04 -0.02 3.06 16 13 C 0.01 0.34 5.09 -27.88 -0.14 0.19 16 14 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 15 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 18 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 S 0.15 1.96 23.31 -107.50 -2.51 -0.55 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 27 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 28 H 0.09 0.79 8.07 -51.93 -0.42 0.37 16 29 H 0.09 1.26 7.42 -51.93 -0.39 0.87 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 32 H 0.07 0.73 6.37 -51.92 -0.33 0.40 16 33 H 0.39 6.39 6.21 -40.82 -0.25 6.13 16 34 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 337.83 15.07 5.09 5.09 Total: -1.00 -32.90 337.83 -9.71 -42.61 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.58 Total: 1.18 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -1.62 Total: -3.43 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -0.16 Total: -48.83 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.08 Total: -12.60 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.51 Total: -0.55 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.90 -9.71 -42.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273645334.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.318 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds