Wall clock time and date at job start Tue Mar 31 2020 05:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35903 * 117.00264 * 2 1 4 4 C 1.38758 * 120.05282 * 0.02562 * 3 2 1 5 5 C 1.38118 * 119.94554 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.05519 * 359.97438 * 5 4 3 7 7 C 1.38251 * 120.11276 * 359.75303 * 6 5 4 8 8 C 1.38164 * 120.05043 * 0.50333 * 7 6 5 9 9 C 1.50706 * 120.02757 * 179.77233 * 8 7 6 10 10 H 1.08996 * 109.46822 * 214.72825 * 9 8 7 11 11 C 1.52997 * 109.47238 * 94.72042 * 9 8 7 12 12 S 1.81405 * 109.46549 * 334.72148 * 9 8 7 13 13 O 1.42095 * 109.47215 * 291.38687 * 12 9 8 14 14 C 1.81407 * 102.99573 * 175.00190 * 12 9 8 15 15 C 1.52998 * 109.47143 * 180.02562 * 14 12 9 16 16 C 1.50700 * 109.47503 * 179.97438 * 15 14 12 17 17 H 1.08004 * 119.99363 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00229 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00082 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99845 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47050 * 60.00483 * 20 18 16 22 22 H 1.48508 * 109.46979 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47443 * 299.99930 * 20 18 16 24 24 H 1.08998 * 109.47236 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47106 * 299.99836 * 1 2 3 26 26 H 1.08995 * 109.47254 * 59.99717 * 1 2 3 27 27 H 1.07998 * 120.02400 * 359.95640 * 4 3 2 28 28 H 1.07995 * 119.97316 * 179.97438 * 5 4 3 29 29 H 1.07996 * 119.94698 * 180.02562 * 6 5 4 30 30 H 1.07998 * 119.97437 * 180.24732 * 7 6 5 31 31 H 1.09002 * 109.47153 * 180.02562 * 11 9 8 32 32 H 1.09001 * 109.46832 * 60.00314 * 11 9 8 33 33 H 1.09004 * 109.47261 * 300.00295 * 11 9 8 34 34 H 1.08998 * 109.46859 * 299.99857 * 14 12 9 35 35 H 1.08998 * 109.47253 * 60.00228 * 14 12 9 36 36 H 1.09005 * 109.47112 * 300.00290 * 15 14 12 37 37 H 1.09004 * 109.47394 * 59.99698 * 15 14 12 38 38 H 0.97007 * 120.00330 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3018 3.6758 0.0016 7 6 4.0560 2.5171 0.0068 8 6 3.4311 1.2849 0.0009 9 6 4.2537 0.0221 0.0013 10 1 3.7469 -0.7418 -0.5883 11 6 4.4263 -0.4736 1.4384 12 16 5.8828 0.3616 -0.7210 13 8 5.7390 0.6289 -2.1092 14 6 6.7641 -1.2078 -0.4955 15 6 8.1798 -1.0838 -1.0623 16 6 8.9122 -2.3873 -0.8745 17 1 8.4173 -3.2211 -0.3987 18 6 10.2137 -2.5159 -1.3109 19 7 10.8159 -1.5011 -1.8916 20 14 11.1213 -4.1320 -1.0786 21 1 10.3956 -5.2141 -1.7910 22 1 12.4955 -4.0115 -1.6287 23 1 11.1948 -4.4549 0.3689 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 0.2128 2.3203 0.0002 28 1 1.3339 4.5113 0.0011 29 1 3.7922 4.6381 0.0024 30 1 5.1344 2.5752 0.0112 31 1 5.0217 -1.3867 1.4388 32 1 3.4474 -0.6776 1.8724 33 1 4.9331 0.2904 2.0280 34 1 6.8181 -1.4447 0.5671 35 1 6.2314 -2.0021 -1.0183 36 1 8.1262 -0.8465 -2.1249 37 1 8.7124 -0.2895 -0.5392 38 1 11.7317 -1.5915 -2.1983 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274784445.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:31 Heat of formation + Delta-G solvation = -61.459437 kcal Electronic energy + Delta-G solvation = -19634.073298 eV Core-core repulsion = 16568.368032 eV Total energy + Delta-G solvation = -3065.705265 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.34677 -37.56274 -35.08337 -34.18948 -33.64437 -30.96681 -30.27253 -29.47026 -27.43647 -25.22687 -24.02064 -22.31811 -21.62443 -20.83259 -18.17339 -16.94382 -16.62240 -16.31916 -15.90936 -15.74804 -14.78207 -14.59658 -14.57713 -14.20170 -14.05799 -13.74675 -13.50167 -12.97561 -12.58941 -12.36503 -12.26617 -11.97901 -11.75407 -11.61054 -11.33505 -11.26867 -11.16217 -10.91799 -10.78573 -10.70043 -10.05838 -9.98218 -9.42555 -9.04775 -8.84560 -8.38259 -8.20903 -7.61435 -6.01336 -4.05425 1.20852 1.34949 2.03285 3.14617 3.21291 3.32902 3.37445 3.39874 3.66842 4.32865 4.45609 4.58881 4.70899 4.84692 4.91925 4.96996 5.14594 5.25051 5.28600 5.33490 5.35639 5.41755 5.57020 5.75259 5.91188 6.00286 6.03803 6.19666 6.24125 6.29549 6.34561 6.43799 6.66654 6.86993 7.28084 7.53111 7.65270 7.93823 8.35570 8.99006 9.58425 11.09305 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.032087 B = 0.003712 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.419356 B = 7540.989419 C = 8065.680935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.129 3.871 4 C -0.207 4.207 5 C -0.090 4.090 6 C -0.145 4.145 7 C -0.089 4.089 8 C -0.071 4.071 9 C -0.376 4.376 10 H 0.096 0.904 11 C -0.118 4.118 12 S 1.218 4.782 13 O -0.848 6.848 14 C -0.416 4.416 15 C 0.039 3.961 16 C -0.519 4.519 17 H 0.057 0.943 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.895 3.105 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.275 1.275 24 H 0.098 0.902 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.134 0.866 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.022 0.978 37 H 0.028 0.972 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.215 9.361 9.462 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.083 3.917 4 C -0.226 4.226 5 C -0.108 4.108 6 C -0.164 4.164 7 C -0.107 4.107 8 C -0.073 4.073 9 C -0.491 4.491 10 H 0.114 0.886 11 C -0.176 4.176 12 S 1.419 4.581 13 O -0.844 6.844 14 C -0.556 4.556 15 C 0.000 4.000 16 C -0.558 4.558 17 H 0.075 0.925 18 C -0.144 4.144 19 N -0.532 5.532 20 Si 0.723 3.277 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.201 1.201 24 H 0.116 0.884 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.144 0.856 28 H 0.142 0.858 29 H 0.146 0.854 30 H 0.152 0.848 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.126 0.874 35 H 0.091 0.909 36 H 0.041 0.959 37 H 0.047 0.953 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.689 10.063 8.937 23.031 hybrid contribution -0.891 -2.562 -1.067 2.915 sum -19.581 7.501 7.870 22.396 Atomic orbital electron populations 1.23042 0.78815 1.03838 1.01134 1.86115 1.20899 1.26850 1.88568 1.18853 0.91751 0.84229 0.96870 1.21186 0.99781 0.92388 1.09195 1.20901 0.94736 0.96797 0.98341 1.21020 0.93787 0.98344 1.03220 1.20962 1.00291 0.91183 0.98310 1.18584 0.90156 0.93958 1.04573 1.26410 1.17436 0.99534 1.05707 0.88569 1.21444 1.02467 1.01468 0.92221 1.70166 0.89308 1.00654 0.97956 1.93096 1.82133 1.77734 1.31398 1.27657 1.08067 1.12960 1.06911 1.18787 0.86461 0.98317 0.96414 1.21120 0.97532 0.97915 1.39249 0.92522 1.25036 0.97603 0.96682 0.95106 1.69951 1.12915 1.30585 1.39743 0.86608 0.78776 0.83841 0.78494 1.20318 1.21179 1.20083 0.88365 0.92727 0.92830 0.85636 0.85838 0.85381 0.84791 0.91349 0.92306 0.91233 0.87443 0.90887 0.95935 0.95324 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.05 9.63 -19.44 -0.19 -4.24 16 3 C 0.13 1.74 6.66 -39.22 -0.26 1.47 16 4 C -0.21 -2.28 9.04 -39.43 -0.36 -2.64 16 5 C -0.09 -0.91 10.04 -39.61 -0.40 -1.31 16 6 C -0.15 -1.57 10.04 -39.56 -0.40 -1.97 16 7 C -0.09 -1.13 9.10 -39.60 -0.36 -1.49 16 8 C -0.07 -1.02 5.01 -104.47 -0.52 -1.54 16 9 C -0.38 -5.59 2.79 -27.88 -0.08 -5.67 16 10 H 0.10 1.61 7.69 -51.93 -0.40 1.21 16 11 C -0.12 -1.41 8.92 37.16 0.33 -1.08 16 12 S 1.22 21.11 10.59 -107.50 -1.14 19.97 16 13 O -0.85 -20.09 18.14 -35.23 -0.64 -20.73 16 14 C -0.42 -8.47 5.26 37.16 0.20 -8.27 16 15 C 0.04 1.01 4.98 -27.88 -0.14 0.87 16 16 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 17 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 20 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.37 7.66 -51.92 -0.40 -0.03 16 26 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 27 H 0.13 1.06 6.30 -52.49 -0.33 0.73 16 28 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 29 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 30 H 0.13 1.48 6.49 -52.49 -0.34 1.14 16 31 H 0.07 0.80 6.51 -51.93 -0.34 0.46 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.11 1.86 6.90 -51.92 -0.36 1.50 16 35 H 0.07 1.56 8.14 -51.92 -0.42 1.13 16 36 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 328.96 15.07 4.96 4.96 Total: -1.00 -37.35 328.96 -8.18 -45.53 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -5.49 Total: -1.98 kcal Atomic # 6 Polarization: -32.53 SS G_CDS: -1.40 Total: -33.94 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.83 Total: -24.97 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 21.11 SS G_CDS: -1.14 Total: 19.97 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -37.35 -8.18 -45.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274784445.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.928 kcal (2) G-P(sol) polarization free energy of solvation -37.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds