Wall clock time and date at job start Tue Mar 31 2020 05:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35896 * 117.00234 * 2 1 4 4 C 1.38755 * 120.05239 * 0.02562 * 3 2 1 5 5 C 1.38132 * 119.94259 * 179.97438 * 4 3 2 6 6 C 1.38286 * 120.05372 * 359.97438 * 5 4 3 7 7 C 1.38244 * 120.11263 * 0.02562 * 6 5 4 8 8 C 1.38162 * 120.05639 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.02907 * 180.27477 * 8 7 6 10 10 H 1.08995 * 109.47492 * 213.97634 * 9 8 7 11 11 C 1.53006 * 109.46925 * 93.97679 * 9 8 7 12 12 S 1.81403 * 109.47080 * 333.97782 * 9 8 7 13 13 O 1.42108 * 109.46915 * 74.53983 * 12 9 8 14 14 C 1.81399 * 102.99772 * 190.92765 * 12 9 8 15 15 C 1.53006 * 109.46742 * 179.97438 * 14 12 9 16 16 C 1.50700 * 109.47012 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99757 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99732 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00500 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99776 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47078 * 89.99930 * 20 18 16 22 22 H 1.48498 * 109.47279 * 210.00438 * 20 18 16 23 23 H 1.48506 * 109.47074 * 330.00429 * 20 18 16 24 24 H 1.08997 * 109.47160 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46819 * 300.00093 * 1 2 3 26 26 H 1.08993 * 109.46981 * 59.99669 * 1 2 3 27 27 H 1.07997 * 120.03325 * 359.95625 * 4 3 2 28 28 H 1.07997 * 119.97093 * 179.97438 * 5 4 3 29 29 H 1.08002 * 119.94094 * 179.97438 * 6 5 4 30 30 H 1.08002 * 119.97026 * 179.97438 * 7 6 5 31 31 H 1.08995 * 109.47115 * 60.00216 * 11 9 8 32 32 H 1.08999 * 109.46905 * 180.02562 * 11 9 8 33 33 H 1.09008 * 109.46787 * 300.00006 * 11 9 8 34 34 H 1.09000 * 109.47295 * 299.99374 * 14 12 9 35 35 H 1.08995 * 109.47238 * 60.00263 * 14 12 9 36 36 H 1.09001 * 109.47387 * 300.00460 * 15 14 12 37 37 H 1.09008 * 109.47099 * 60.00040 * 15 14 12 38 38 H 0.96998 * 120.00327 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3020 3.6757 0.0016 7 6 4.0560 2.5170 0.0011 8 6 3.4312 1.2848 -0.0005 9 6 4.2537 0.0221 0.0051 10 1 3.7409 -0.7483 -0.5707 11 6 4.4410 -0.4581 1.4458 12 16 5.8753 0.3534 -0.7375 13 8 6.6736 1.0910 0.1779 14 6 6.5745 -1.3071 -0.9480 15 6 7.9659 -1.1987 -1.5752 16 6 8.5472 -2.5781 -1.7496 17 1 7.9807 -3.4453 -1.4440 18 6 9.8017 -2.7330 -2.3002 19 7 10.4913 -1.6770 -2.6727 20 14 10.5219 -4.4429 -2.5169 21 1 10.1429 -4.9742 -3.8509 22 1 12.0017 -4.3735 -2.4139 23 1 9.9936 -5.3404 -1.4583 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 0.2129 2.3204 0.0002 28 1 1.3341 4.5114 0.0011 29 1 3.7923 4.6381 0.0016 30 1 5.1345 2.5751 0.0011 31 1 3.4667 -0.6571 1.8920 32 1 5.0364 -1.3711 1.4499 33 1 4.9539 0.3123 2.0217 34 1 6.6507 -1.7952 0.0236 35 1 5.9274 -1.8940 -1.5998 36 1 7.8895 -0.7107 -2.5469 37 1 8.6134 -0.6116 -0.9238 38 1 11.3741 -1.7859 -3.0597 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274784449.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:34 Heat of formation + Delta-G solvation = -61.014567 kcal Electronic energy + Delta-G solvation = -19651.751184 eV Core-core repulsion = 16586.065210 eV Total energy + Delta-G solvation = -3065.685974 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.34077 -37.55900 -35.14898 -34.12706 -33.64719 -30.93417 -30.23586 -29.51559 -27.42755 -25.24652 -24.00337 -22.28183 -21.62334 -20.76844 -18.12292 -17.09248 -16.63039 -16.25191 -15.91819 -15.72949 -14.79945 -14.64591 -14.53179 -14.26750 -13.96699 -13.53187 -13.51791 -13.03730 -12.43728 -12.36822 -12.18806 -12.05833 -11.85872 -11.54652 -11.46827 -11.26143 -11.07318 -10.91888 -10.77005 -10.68682 -10.08841 -9.95235 -9.41761 -9.07510 -8.80955 -8.38732 -8.21753 -7.60561 -6.01768 -4.05692 1.21948 1.35554 2.06771 3.14629 3.22032 3.31259 3.37654 3.41127 3.68112 4.29373 4.45393 4.58191 4.73868 4.86533 4.92546 5.00687 5.16262 5.26792 5.31779 5.33244 5.35517 5.43578 5.66010 5.73745 5.90942 6.00563 6.05500 6.20735 6.24571 6.26979 6.37010 6.49249 6.70889 6.86195 7.28620 7.53262 7.64910 7.93641 8.35331 8.99009 9.58236 11.08900 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029781 B = 0.003756 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.985599 B = 7452.498574 C = 8038.548949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.132 3.868 4 C -0.208 4.208 5 C -0.089 4.089 6 C -0.147 4.147 7 C -0.098 4.098 8 C -0.073 4.073 9 C -0.374 4.374 10 H 0.125 0.875 11 C -0.134 4.134 12 S 1.221 4.779 13 O -0.847 6.847 14 C -0.414 4.414 15 C 0.038 3.962 16 C -0.518 4.518 17 H 0.057 0.943 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.895 3.105 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.098 0.902 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.126 0.874 28 H 0.123 0.877 29 H 0.126 0.874 30 H 0.144 0.856 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.028 0.972 37 H 0.023 0.977 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.903 7.965 2.580 23.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.086 3.914 4 C -0.227 4.227 5 C -0.107 4.107 6 C -0.165 4.165 7 C -0.117 4.117 8 C -0.075 4.075 9 C -0.489 4.489 10 H 0.143 0.857 11 C -0.191 4.191 12 S 1.422 4.578 13 O -0.843 6.843 14 C -0.554 4.554 15 C 0.000 4.000 16 C -0.558 4.558 17 H 0.075 0.925 18 C -0.144 4.144 19 N -0.532 5.532 20 Si 0.722 3.278 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.117 0.883 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.144 0.856 28 H 0.141 0.859 29 H 0.144 0.856 30 H 0.162 0.838 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.123 0.877 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.277 8.719 2.318 23.111 hybrid contribution 0.268 -1.969 1.827 2.700 sum -21.010 6.750 4.145 22.453 Atomic orbital electron populations 1.23043 0.78818 1.03843 1.01135 1.86110 1.20869 1.26770 1.88567 1.18814 0.91575 0.84207 0.96837 1.21178 0.99753 0.92358 1.09422 1.20918 0.94669 0.96841 0.98256 1.21032 0.93733 0.98377 1.03349 1.21412 1.01452 0.91265 0.97526 1.18538 0.90003 0.93826 1.05085 1.26471 1.17265 1.00022 1.05109 0.85668 1.21672 1.02129 1.01136 0.94206 1.70418 0.85731 0.89420 1.12204 1.93068 1.64207 1.60451 1.66551 1.27583 1.08268 1.13613 1.05919 1.18793 0.87080 0.98356 0.95771 1.21159 1.01306 0.92245 1.41050 0.92487 1.25038 0.96999 0.96902 0.95508 1.69957 1.12412 1.28798 1.42011 0.86552 0.78271 0.84426 0.78514 1.20489 1.21158 1.19937 0.88336 0.92944 0.92655 0.85612 0.85918 0.85641 0.83843 0.92396 0.92199 0.92137 0.90686 0.87712 0.95371 0.95837 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.61 9.62 -19.41 -0.19 -3.80 16 3 C 0.13 1.64 6.66 -39.22 -0.26 1.38 16 4 C -0.21 -2.16 9.04 -39.43 -0.36 -2.51 16 5 C -0.09 -0.89 10.04 -39.60 -0.40 -1.28 16 6 C -0.15 -1.67 10.04 -39.56 -0.40 -2.07 16 7 C -0.10 -1.35 9.09 -39.61 -0.36 -1.71 16 8 C -0.07 -1.01 5.00 -104.47 -0.52 -1.54 16 9 C -0.37 -5.44 2.70 -27.88 -0.08 -5.51 16 10 H 0.13 1.63 7.66 -51.93 -0.40 1.23 16 11 C -0.13 -2.06 8.98 37.16 0.33 -1.73 16 12 S 1.22 20.58 11.40 -107.50 -1.23 19.36 16 13 O -0.85 -18.61 16.11 -35.23 -0.57 -19.18 16 14 C -0.41 -8.33 5.72 37.16 0.21 -8.12 16 15 C 0.04 1.00 4.98 -27.88 -0.14 0.86 16 16 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 20 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 26 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 27 H 0.13 0.98 6.30 -52.49 -0.33 0.64 16 28 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 29 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 30 H 0.14 2.18 5.35 -52.49 -0.28 1.90 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.92 7.30 -51.93 -0.38 0.54 16 33 H 0.06 1.02 7.94 -51.92 -0.41 0.61 16 34 H 0.07 1.57 7.40 -51.92 -0.38 1.18 16 35 H 0.10 1.84 8.14 -51.93 -0.42 1.41 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.02 0.68 8.14 -51.92 -0.42 0.26 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 328.06 15.07 4.94 4.94 Total: -1.00 -35.47 328.06 -8.18 -43.65 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -5.48 Total: -0.88 kcal Atomic # 6 Polarization: -33.18 SS G_CDS: -1.38 Total: -34.56 kcal Atomic # 7 Polarization: -26.97 SS G_CDS: 0.74 Total: -26.23 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.75 Total: -22.97 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 20.58 SS G_CDS: -1.23 Total: 19.36 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.47 -8.18 -43.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274784449.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.362 kcal (2) G-P(sol) polarization free energy of solvation -35.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds