Wall clock time and date at job start Tue Mar 31 2020 05:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47073 * 2 1 4 4 C 1.52999 * 109.47171 * 240.00026 * 2 1 3 5 5 S 1.81402 * 109.47065 * 65.00049 * 4 2 1 6 6 O 1.42102 * 108.57763 * 294.48630 * 5 4 2 7 7 O 1.42104 * 108.57686 * 65.51044 * 5 4 2 8 8 C 1.81403 * 101.92211 * 179.97438 * 5 4 2 9 9 C 1.52990 * 109.46947 * 179.97438 * 8 5 4 10 10 C 1.50701 * 109.46940 * 179.97438 * 9 8 5 11 11 H 1.07998 * 120.00062 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00073 * 180.02562 * 10 9 8 13 13 N 1.31521 * 119.99933 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00110 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47349 * 89.99408 * 14 12 10 16 16 H 1.48491 * 109.47189 * 209.99570 * 14 12 10 17 17 H 1.48504 * 109.47030 * 329.99883 * 14 12 10 18 18 C 1.50702 * 109.47112 * 119.99718 * 2 1 3 19 19 C 1.38234 * 120.00272 * 239.99894 * 18 2 1 20 20 C 1.38230 * 119.99880 * 179.97438 * 19 18 2 21 21 C 1.38235 * 120.00326 * 359.97438 * 20 19 18 22 22 C 1.38234 * 119.99814 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99464 * 60.02609 * 18 2 1 24 24 H 1.08997 * 109.47114 * 59.99789 * 1 2 3 25 25 H 1.08995 * 109.47119 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47141 * 300.00060 * 1 2 3 27 27 H 1.09001 * 109.47213 * 184.99904 * 4 2 1 28 28 H 1.08994 * 109.47386 * 305.00081 * 4 2 1 29 29 H 1.08998 * 109.46850 * 300.00271 * 8 5 4 30 30 H 1.08996 * 109.46724 * 59.99861 * 8 5 4 31 31 H 1.08998 * 109.47646 * 299.99880 * 9 8 5 32 32 H 1.09006 * 109.47530 * 60.00337 * 9 8 5 33 33 H 0.96992 * 119.99510 * 180.02562 * 13 12 10 34 34 H 1.08001 * 119.99769 * 0.02562 * 19 18 2 35 35 H 1.08000 * 120.00376 * 180.02562 * 20 19 18 36 36 H 1.08000 * 120.00616 * 179.72578 * 21 20 19 37 37 H 1.08001 * 120.00299 * 179.97438 * 22 21 20 38 38 H 1.07997 * 120.00481 * 359.97438 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 16 1.5601 0.2156 -2.7266 6 8 0.1433 0.1967 -2.8343 7 8 2.2381 1.4644 -2.7108 8 6 2.2552 -0.8019 -4.0578 9 6 1.9433 -0.1561 -5.4092 10 6 2.5213 -1.0011 -6.5151 11 1 3.0571 -1.9083 -6.2777 12 6 2.3661 -0.6160 -7.8299 13 7 1.7132 0.4885 -8.1190 14 14 3.0819 -1.6638 -9.2007 15 1 2.0756 -2.6659 -9.6349 16 1 3.4437 -0.7957 -10.3499 17 1 4.2955 -2.3630 -8.7071 18 6 2.0323 -0.7104 1.2305 19 6 2.8270 -0.0386 2.1404 20 6 3.2873 -0.6901 3.2693 21 6 2.9525 -2.0132 3.4887 22 6 2.1569 -2.6847 2.5793 23 6 1.6987 -2.0339 1.4489 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.1263 -0.7994 -1.2056 28 1 1.6054 -1.7197 -1.2952 29 1 3.3351 -0.8774 -3.9313 30 1 1.8146 -1.7982 -4.0213 31 1 0.8633 -0.0810 -5.5355 32 1 2.3836 0.8404 -5.4460 33 1 1.6037 0.7591 -9.0439 34 1 3.0876 0.9955 1.9697 35 1 3.9079 -0.1652 3.9805 36 1 3.3157 -2.5235 4.3685 37 1 1.8955 -3.7185 2.7504 38 1 1.0778 -2.5588 0.7381 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279985513.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:25 Heat of formation + Delta-G solvation = -66.062784 kcal Electronic energy + Delta-G solvation = -19547.752020 eV Core-core repulsion = 16481.847138 eV Total energy + Delta-G solvation = -3065.904882 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.69624 -36.50278 -35.88146 -35.32082 -33.87061 -31.18387 -31.11747 -30.01278 -27.71945 -25.54087 -23.71212 -22.71671 -21.59220 -20.25736 -18.40795 -17.37455 -16.77241 -16.11066 -15.82186 -15.48226 -15.17342 -14.99385 -14.51432 -14.07328 -13.84974 -13.54944 -13.40202 -13.34558 -12.75666 -12.52771 -12.34181 -11.76294 -11.62516 -11.53557 -11.50579 -11.47108 -11.17361 -11.07495 -10.91933 -10.90847 -10.46415 -10.35673 -10.18643 -9.64844 -9.13813 -9.12038 -8.87614 -8.48933 -6.11191 -4.16942 0.43287 1.15637 1.20149 3.26471 3.26603 3.32904 3.35487 3.55709 4.02754 4.31604 4.37328 4.48022 4.55947 4.77142 4.80043 4.88126 4.93149 5.16417 5.23866 5.26637 5.29710 5.43224 5.51552 5.65447 5.70461 5.76648 5.81789 5.86299 5.93027 6.20721 6.29301 6.31478 6.45886 6.49479 6.80034 7.35073 7.40838 7.81680 8.18638 8.86691 9.47583 10.99766 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.031719 B = 0.003473 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.526235 B = 8060.918719 C = 8441.826233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.038 4.038 3 H 0.092 0.908 4 C -0.618 4.618 5 S 2.399 3.601 6 O -0.941 6.941 7 O -0.945 6.945 8 C -0.573 4.573 9 C 0.028 3.972 10 C -0.522 4.522 11 H 0.061 0.939 12 C 0.058 3.942 13 N -0.890 5.890 14 Si 0.900 3.100 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.273 1.273 18 C -0.066 4.066 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.127 4.127 22 C -0.119 4.119 23 C -0.113 4.113 24 H 0.090 0.910 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.265 0.735 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.380 -4.858 21.665 22.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.057 4.057 3 H 0.110 0.890 4 C -0.745 4.745 5 S 2.584 3.416 6 O -0.938 6.938 7 O -0.943 6.943 8 C -0.706 4.706 9 C -0.010 4.010 10 C -0.561 4.561 11 H 0.079 0.921 12 C -0.145 4.145 13 N -0.528 5.528 14 Si 0.727 3.273 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.067 4.067 19 C -0.136 4.136 20 C -0.137 4.137 21 C -0.145 4.145 22 C -0.138 4.138 23 C -0.131 4.131 24 H 0.108 0.892 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.834 -3.936 21.514 21.887 hybrid contribution 0.940 -1.426 -0.633 1.822 sum 1.774 -5.362 20.881 21.632 Atomic orbital electron populations 1.22359 0.92839 1.03822 1.04469 1.19852 0.96936 0.98923 0.89990 0.88957 1.30584 1.11833 1.14703 1.17340 1.08680 0.76581 0.78142 0.78151 1.93516 1.27902 1.87177 1.85209 1.93543 1.76188 1.38629 1.85893 1.30201 1.11570 1.13631 1.15184 1.18980 0.98652 0.96632 0.86745 1.21029 1.36061 1.08669 0.90386 0.92062 1.25071 0.95176 0.95260 0.98982 1.69962 1.40813 1.22669 1.19320 0.86471 0.79396 0.80053 0.81369 1.20464 1.21001 1.19764 1.19749 0.97241 0.94270 0.95418 1.21149 0.97830 1.00175 0.94412 1.21139 1.00048 0.94986 0.97530 1.21147 0.98910 0.94940 0.99520 1.21152 0.98145 0.99894 0.94561 1.21046 1.00063 0.94297 0.97674 0.89159 0.91554 0.91621 0.85115 0.85125 0.86247 0.86198 0.94603 0.94671 0.92535 0.85786 0.86071 0.86256 0.86086 0.85888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 8.64 37.16 0.32 -1.79 16 2 C -0.04 -0.45 2.56 -91.77 -0.23 -0.68 16 3 H 0.09 1.07 7.88 -51.93 -0.41 0.66 16 4 C -0.62 -7.25 5.00 37.16 0.19 -7.06 16 5 S 2.40 40.09 4.51 -107.50 -0.49 39.60 16 6 O -0.94 -18.06 15.46 -57.83 -0.89 -18.96 16 7 O -0.95 -18.95 18.10 -57.83 -1.05 -20.00 16 8 C -0.57 -10.60 5.74 37.15 0.21 -10.39 16 9 C 0.03 0.73 4.98 -27.89 -0.14 0.59 16 10 C -0.52 -14.44 9.11 -34.44 -0.31 -14.76 16 11 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 13 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 14 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 18 C -0.07 -0.72 4.78 -104.62 -0.50 -1.22 16 19 C -0.12 -1.19 9.67 -39.59 -0.38 -1.58 16 20 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 21 C -0.13 -1.10 10.05 -39.58 -0.40 -1.50 16 22 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 23 C -0.11 -1.14 8.76 -39.58 -0.35 -1.49 16 24 H 0.09 1.25 5.40 -51.93 -0.28 0.97 16 25 H 0.07 0.71 7.39 -51.93 -0.38 0.32 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.13 1.30 8.14 -51.92 -0.42 0.88 16 28 H 0.13 1.24 7.57 -51.93 -0.39 0.84 16 29 H 0.12 1.95 8.14 -51.92 -0.42 1.53 16 30 H 0.12 1.93 8.14 -51.93 -0.42 1.50 16 31 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.12 1.10 7.95 -52.49 -0.42 0.68 16 35 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.12 1.10 7.16 -52.49 -0.38 0.72 16 LS Contribution 329.49 15.07 4.97 4.97 Total: -1.00 -34.74 329.49 -9.84 -44.58 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -5.61 Total: 0.76 kcal Atomic # 6 Polarization: -38.80 SS G_CDS: -2.49 Total: -41.29 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.74 Total: -25.84 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -1.94 Total: -38.96 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 40.09 SS G_CDS: -0.49 Total: 39.60 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.74 -9.84 -44.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279985513.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.483 kcal (2) G-P(sol) polarization free energy of solvation -34.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds