Wall clock time and date at job start Tue Mar 31 2020 05:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39248 * 119.61203 * 2 1 4 4 C 1.36193 * 121.04318 * 179.97438 * 3 2 1 5 5 C 1.40466 * 119.82052 * 0.02562 * 4 3 2 6 6 N 1.33981 * 120.76513 * 179.97438 * 5 4 3 7 7 C 1.30835 * 121.93224 * 180.02562 * 6 5 4 8 8 C 1.40484 * 121.61000 * 359.68236 * 7 6 5 9 9 C 1.43200 * 120.33742 * 180.33997 * 8 7 6 10 10 N 7.17469 * 141.67813 * 179.77208 * 2 1 3 11 11 C 1.39927 * 119.32737 * 0.61714 * 8 7 6 12 12 O 1.35337 * 121.09247 * 179.69961 * 11 8 7 13 13 C 1.42903 * 116.99491 * 269.72100 * 12 11 8 14 14 C 1.53000 * 109.46726 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.46912 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99776 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00001 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00114 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99955 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46725 * 60.00489 * 19 17 15 21 21 H 1.48505 * 109.46988 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47116 * 300.00464 * 19 17 15 23 23 C 1.41275 * 117.81694 * 359.42619 * 11 8 7 24 24 C 1.36262 * 119.60489 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.46976 * 90.00029 * 1 2 3 26 26 H 1.08997 * 109.47023 * 210.00278 * 1 2 3 27 27 H 1.08996 * 109.46749 * 330.00200 * 1 2 3 28 28 H 1.07996 * 119.47693 * 359.97438 * 3 2 1 29 29 H 1.08003 * 120.08599 * 179.97438 * 4 3 2 30 30 H 1.07995 * 119.19733 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.47382 * 59.99766 * 13 12 11 32 32 H 1.09001 * 109.46938 * 299.99753 * 13 12 11 33 33 H 1.09001 * 109.47194 * 299.99575 * 14 13 12 34 34 H 1.08992 * 109.47399 * 59.99748 * 14 13 12 35 35 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 36 36 H 1.07993 * 120.18172 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.2106 0.0000 4 6 3.5566 1.2446 0.0005 5 6 4.2853 0.0438 0.0005 6 7 5.6251 0.0552 0.0005 7 6 6.3265 -1.0493 0.0000 8 6 5.7113 -2.3123 0.0061 9 6 6.5056 -3.5037 0.0127 10 7 7.1358 -4.4488 0.0177 11 6 4.3144 -2.3942 -0.0003 12 8 3.6846 -3.5921 -0.0008 13 6 3.3832 -4.1659 -1.2744 14 6 2.6767 -5.5082 -1.0746 15 6 2.3583 -6.1131 -2.4177 16 1 2.6328 -5.5924 -3.3231 17 6 1.7174 -7.3317 -2.4904 18 7 1.3836 -7.9660 -1.3878 19 14 1.3221 -8.0812 -4.1553 20 1 2.5808 -8.2918 -4.9147 21 1 0.6365 -9.3841 -3.9613 22 1 0.4345 -7.1631 -4.9131 23 6 3.5831 -1.1855 -0.0002 24 6 2.1801 -1.1847 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6403 2.1372 -0.0004 29 1 4.0745 2.1924 0.0001 30 1 7.4047 -0.9886 0.0005 31 1 4.3075 -4.3207 -1.8311 32 1 2.7320 -3.4923 -1.8314 33 1 3.3276 -6.1820 -0.5174 34 1 1.7525 -5.3531 -0.5181 35 1 0.9331 -8.8235 -1.4390 36 1 1.6367 -2.1180 -0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291622318.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:17 Heat of formation + Delta-G solvation = 31.719429 kcal Electronic energy + Delta-G solvation = -20679.252827 eV Core-core repulsion = 17514.436900 eV Total energy + Delta-G solvation = -3164.815927 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.19937 -38.56404 -37.60441 -36.21470 -33.63735 -32.70628 -32.03208 -30.72935 -30.01272 -27.20438 -25.30368 -24.48016 -23.11228 -21.97666 -21.19327 -19.58800 -18.37336 -17.70187 -16.57825 -15.93987 -15.43747 -15.22852 -14.99937 -14.58461 -14.37543 -14.15185 -13.86156 -13.62905 -13.53727 -13.10828 -13.01271 -12.63868 -12.39204 -12.36791 -11.88582 -11.63329 -11.39133 -11.30236 -11.18643 -10.73547 -10.70401 -10.19412 -9.90506 -9.67405 -9.57145 -9.40806 -8.86794 -8.50022 -8.18664 -6.15699 -4.21282 0.03115 0.45780 1.64822 2.45949 2.77690 3.25454 3.30006 3.31286 3.36157 3.54021 3.78400 4.00009 4.13282 4.34562 4.47510 4.60266 4.68215 4.90653 4.96785 5.20044 5.20955 5.25690 5.38135 5.50637 5.63714 5.71176 5.83340 5.84653 5.89345 5.92537 6.08501 6.24927 6.39701 6.48520 6.64075 7.29826 7.52929 7.55448 7.62174 7.72453 7.86322 8.14838 8.83484 9.43523 10.95537 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.014843 B = 0.004892 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.961921 B = 5721.854202 C = 7173.967791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.093 4.093 3 C -0.081 4.081 4 C -0.103 4.103 5 C 0.153 3.847 6 N -0.484 5.484 7 C 0.190 3.810 8 C -0.126 4.126 9 C 0.260 3.740 10 N -0.402 5.402 11 C 0.240 3.760 12 O -0.333 6.333 13 C 0.078 3.922 14 C 0.027 3.973 15 C -0.529 4.529 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.899 3.101 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C -0.127 4.127 24 C -0.070 4.070 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.131 0.869 29 H 0.139 0.861 30 H 0.170 0.830 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.028 0.972 34 H 0.030 0.970 35 H 0.265 0.735 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.421 19.875 3.143 20.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.093 4.093 3 C -0.100 4.100 4 C -0.122 4.122 5 C 0.032 3.968 6 N -0.192 5.192 7 C 0.015 3.985 8 C -0.133 4.133 9 C -0.056 4.056 10 N -0.077 5.077 11 C 0.183 3.817 12 O -0.249 6.249 13 C 0.006 3.994 14 C -0.010 4.010 15 C -0.567 4.567 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.526 5.526 19 Si 0.726 3.274 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.200 1.200 23 C -0.129 4.129 24 C -0.089 4.089 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.149 0.851 29 H 0.157 0.843 30 H 0.187 0.813 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.554 18.990 3.362 19.454 hybrid contribution -0.793 -0.964 -0.982 1.588 sum 1.760 18.027 2.381 18.268 Atomic orbital electron populations 1.20847 0.90432 1.03191 1.02837 1.19723 0.96835 0.92661 1.00101 1.20912 0.93967 0.97887 0.97278 1.20732 0.93470 0.96745 1.01257 1.18861 0.89264 0.92236 0.96398 1.67995 1.06385 1.29758 1.15044 1.22808 1.00424 0.84806 0.90486 1.17443 0.91292 0.90279 1.14274 1.25022 0.93627 0.92699 0.94216 1.81239 1.09274 1.08885 1.08330 1.19322 0.88559 0.86562 0.87228 1.85912 1.76170 1.29624 1.33244 1.23511 0.99115 0.97275 0.79473 1.19142 0.95832 0.87723 0.98265 1.20886 1.39460 1.04852 0.91541 0.92405 1.24967 0.95331 0.96740 0.96918 1.69956 1.39971 1.15530 1.27096 0.86545 0.78697 0.78482 0.83665 1.20050 1.21027 1.20021 1.19084 0.95447 0.92613 1.05771 1.20996 0.92003 0.99185 0.96698 0.90726 0.90935 0.91381 0.85063 0.84296 0.81275 0.93449 0.92970 0.95322 0.95170 0.92555 0.84045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.99 36.01 0.36 -0.61 16 2 C -0.09 -0.98 5.85 -104.96 -0.61 -1.60 16 3 C -0.08 -0.73 9.59 -39.94 -0.38 -1.12 16 4 C -0.10 -1.06 9.97 -39.48 -0.39 -1.46 16 5 C 0.15 1.97 6.60 -84.82 -0.56 1.41 16 6 N -0.48 -6.10 10.30 -10.73 -0.11 -6.21 16 7 C 0.19 2.24 10.87 -17.13 -0.19 2.05 16 8 C -0.13 -1.82 5.77 -106.49 -0.61 -2.44 16 9 C 0.26 4.28 14.94 -22.47 -0.34 3.94 16 10 N -0.40 -7.46 18.54 41.84 0.78 -6.68 16 11 C 0.24 3.83 5.79 -37.80 -0.22 3.61 16 12 O -0.33 -6.33 8.86 -17.70 -0.16 -6.49 16 13 C 0.08 1.61 5.99 37.16 0.22 1.84 16 14 C 0.03 0.70 5.34 -27.88 -0.15 0.55 16 15 C -0.53 -14.52 9.11 -34.44 -0.31 -14.83 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 19 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 C -0.13 -1.80 5.75 -106.70 -0.61 -2.41 16 24 C -0.07 -0.92 9.19 -39.52 -0.36 -1.29 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 27 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 28 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 29 H 0.14 1.15 8.06 -52.48 -0.42 0.72 16 30 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.14 1.97 7.66 -52.49 -0.40 1.57 16 LS Contribution 326.79 15.07 4.92 4.92 Total: -1.00 -31.18 326.79 -7.28 -38.46 By element: Atomic # 1 Polarization: 0.12 SS G_CDS: -4.16 Total: -4.05 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -4.26 Total: -10.68 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 1.40 Total: -38.25 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.16 Total: -6.49 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.18 -7.28 -38.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291622318.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.176 kcal (2) G-P(sol) polarization free energy of solvation -31.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds