Wall clock time and date at job start Tue Mar 31 2020 05:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39248 * 119.61203 * 2 1 4 4 C 1.36193 * 121.04318 * 179.97438 * 3 2 1 5 5 C 1.40466 * 119.82052 * 0.02562 * 4 3 2 6 6 N 1.33981 * 120.76513 * 179.97438 * 5 4 3 7 7 C 1.30835 * 121.93224 * 180.02562 * 6 5 4 8 8 C 1.40484 * 121.61000 * 359.68236 * 7 6 5 9 9 C 1.43200 * 120.33742 * 180.33997 * 8 7 6 10 10 N 7.17469 * 141.67813 * 179.77208 * 2 1 3 11 11 C 1.39927 * 119.32737 * 0.61714 * 8 7 6 12 12 O 1.35337 * 121.09247 * 179.69961 * 11 8 7 13 13 C 1.42903 * 116.99491 * 269.72100 * 12 11 8 14 14 C 1.53000 * 109.46726 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.46912 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99776 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00001 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00114 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99955 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46725 * 60.00489 * 19 17 15 21 21 H 1.48505 * 109.46988 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47116 * 300.00464 * 19 17 15 23 23 C 1.41275 * 117.81694 * 359.42619 * 11 8 7 24 24 C 1.36262 * 119.60489 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.46976 * 90.00029 * 1 2 3 26 26 H 1.08997 * 109.47023 * 210.00278 * 1 2 3 27 27 H 1.08996 * 109.46749 * 330.00200 * 1 2 3 28 28 H 1.07996 * 119.47693 * 359.97438 * 3 2 1 29 29 H 1.08003 * 120.08599 * 179.97438 * 4 3 2 30 30 H 1.07995 * 119.19733 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.47382 * 59.99766 * 13 12 11 32 32 H 1.09001 * 109.46938 * 299.99753 * 13 12 11 33 33 H 1.09001 * 109.47194 * 299.99575 * 14 13 12 34 34 H 1.08992 * 109.47399 * 59.99748 * 14 13 12 35 35 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 36 36 H 1.07993 * 120.18172 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.2106 0.0000 4 6 3.5566 1.2446 0.0005 5 6 4.2853 0.0438 0.0005 6 7 5.6251 0.0552 0.0005 7 6 6.3265 -1.0493 0.0000 8 6 5.7113 -2.3123 0.0061 9 6 6.5056 -3.5037 0.0127 10 7 7.1358 -4.4488 0.0177 11 6 4.3144 -2.3942 -0.0003 12 8 3.6846 -3.5921 -0.0008 13 6 3.3832 -4.1659 -1.2744 14 6 2.6767 -5.5082 -1.0746 15 6 2.3583 -6.1131 -2.4177 16 1 2.6328 -5.5924 -3.3231 17 6 1.7174 -7.3317 -2.4904 18 7 1.3836 -7.9660 -1.3878 19 14 1.3221 -8.0812 -4.1553 20 1 2.5808 -8.2918 -4.9147 21 1 0.6365 -9.3841 -3.9613 22 1 0.4345 -7.1631 -4.9131 23 6 3.5831 -1.1855 -0.0002 24 6 2.1801 -1.1847 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6403 2.1372 -0.0004 29 1 4.0745 2.1924 0.0001 30 1 7.4047 -0.9886 0.0005 31 1 4.3075 -4.3207 -1.8311 32 1 2.7320 -3.4923 -1.8314 33 1 3.3276 -6.1820 -0.5174 34 1 1.7525 -5.3531 -0.5181 35 1 0.9331 -8.8235 -1.4390 36 1 1.6367 -2.1180 -0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291622318.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:17 Heat of formation + Delta-G solvation = 14.097602 kcal Electronic energy + Delta-G solvation = -20680.016967 eV Core-core repulsion = 17514.436900 eV Total energy + Delta-G solvation = -3165.580067 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.25478 -39.83111 -38.67403 -37.51004 -35.61727 -33.87985 -33.07071 -32.06998 -31.48435 -28.10968 -27.08132 -25.67968 -24.06817 -23.30800 -22.80834 -20.66120 -19.63801 -18.84110 -18.38347 -17.26423 -16.84087 -16.51504 -16.19500 -16.16797 -15.47010 -15.23711 -14.92893 -14.77261 -14.70146 -14.35879 -14.27619 -14.07661 -14.01308 -13.29500 -13.25437 -13.07487 -12.72981 -12.58021 -12.49714 -12.28595 -12.24823 -11.76241 -11.57501 -11.20920 -11.16223 -10.82970 -10.64096 -9.81093 -9.16251 -8.30159 -6.44507 -1.06958 -0.48957 0.64899 1.38306 1.41891 1.45934 1.46899 1.49944 2.10009 2.27203 2.42860 2.59947 2.97681 3.04365 3.22914 3.48416 3.61286 3.76661 3.92028 4.09958 4.13107 4.16474 4.29538 4.34249 4.58755 4.62282 4.79713 4.88174 4.90650 4.97058 5.15683 5.24317 5.29617 5.32890 5.39780 5.56301 5.63828 5.81597 5.99778 6.17049 6.28943 6.69158 6.69461 7.25858 8.82316 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.014843 B = 0.004892 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.961921 B = 5721.854202 C = 7173.967791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.079 4.079 3 C -0.068 4.068 4 C -0.100 4.100 5 C 0.140 3.860 6 N -0.478 5.478 7 C 0.198 3.802 8 C -0.127 4.127 9 C 0.279 3.721 10 N -0.446 5.446 11 C 0.209 3.791 12 O -0.350 6.350 13 C 0.099 3.901 14 C 0.033 3.967 15 C -0.549 4.549 16 H 0.068 0.932 17 C 0.006 3.994 18 N -0.928 5.928 19 Si 0.972 3.028 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.259 1.259 23 C -0.135 4.135 24 C -0.104 4.104 25 H 0.082 0.918 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.174 0.826 29 H 0.167 0.833 30 H 0.207 0.793 31 H 0.044 0.956 32 H 0.067 0.933 33 H -0.009 1.009 34 H 0.009 0.991 35 H 0.267 0.733 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.951 23.217 1.965 23.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.079 4.079 3 C -0.088 4.088 4 C -0.118 4.118 5 C 0.020 3.980 6 N -0.185 5.185 7 C 0.022 3.978 8 C -0.133 4.133 9 C -0.036 4.036 10 N -0.122 5.122 11 C 0.154 3.846 12 O -0.267 6.267 13 C 0.026 3.974 14 C -0.005 4.005 15 C -0.586 4.586 16 H 0.086 0.914 17 C -0.193 4.193 18 N -0.567 5.567 19 Si 0.796 3.204 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.184 1.184 23 C -0.137 4.137 24 C -0.123 4.123 25 H 0.101 0.899 26 H 0.081 0.919 27 H 0.114 0.886 28 H 0.192 0.808 29 H 0.184 0.816 30 H 0.223 0.777 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.010 0.990 34 H 0.027 0.973 35 H 0.076 0.924 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.092 22.360 2.191 22.564 hybrid contribution -0.714 -1.823 -0.527 2.028 sum 1.378 20.537 1.663 20.650 Atomic orbital electron populations 1.20940 0.88762 1.04156 1.03608 1.20086 0.98118 0.92317 0.97397 1.21357 0.93772 0.98694 0.94949 1.21115 0.94007 0.96670 1.00031 1.19254 0.89565 0.92626 0.96585 1.68097 1.06326 1.29592 1.14517 1.23279 1.01875 0.83239 0.89385 1.17600 0.90466 0.90637 1.14644 1.25342 0.92799 0.92560 0.92947 1.81241 1.10904 1.10016 1.10064 1.19564 0.89257 0.85933 0.89846 1.85844 1.76956 1.31581 1.32295 1.22958 0.98576 0.95333 0.80498 1.18934 0.94561 0.89829 0.97133 1.21317 1.39439 1.05444 0.92438 0.91355 1.25986 0.94945 0.97224 1.01127 1.70101 1.40835 1.16043 1.29737 0.85390 0.78818 0.77696 0.78522 1.19325 1.20616 1.18382 1.19147 0.95904 0.92379 1.06276 1.20949 0.91837 0.99686 0.99816 0.89901 0.91900 0.88559 0.80844 0.81573 0.77680 0.93766 0.91517 0.99046 0.97299 0.92373 0.86175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.66 9.99 71.24 0.71 -0.95 16 2 C -0.08 -1.49 5.85 -20.08 -0.12 -1.61 16 3 C -0.07 -0.96 9.59 22.04 0.21 -0.74 16 4 C -0.10 -1.67 9.97 22.34 0.22 -1.45 16 5 C 0.14 3.32 6.60 40.18 0.27 3.58 16 6 N -0.48 -10.91 10.30 -187.86 -1.93 -12.84 16 7 C 0.20 4.31 10.87 85.39 0.93 5.24 16 8 C -0.13 -3.67 5.77 -21.08 -0.12 -3.79 16 9 C 0.28 9.39 14.94 88.33 1.32 10.71 16 10 N -0.45 -17.14 18.54 19.00 0.35 -16.79 16 11 C 0.21 6.88 5.79 23.43 0.14 7.02 16 12 O -0.35 -14.11 8.86 -86.26 -0.76 -14.88 16 13 C 0.10 4.29 5.99 71.98 0.43 4.72 16 14 C 0.03 1.77 5.34 29.85 0.16 1.93 16 15 C -0.55 -30.95 9.11 25.60 0.23 -30.71 16 16 H 0.07 3.62 7.74 -2.91 -0.02 3.59 16 17 C 0.01 0.36 5.46 84.66 0.46 0.82 16 18 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 19 Si 0.97 43.50 29.54 68.60 2.03 45.52 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 23 C -0.13 -3.80 5.75 -21.21 -0.12 -3.92 16 24 C -0.10 -2.74 9.19 22.31 0.21 -2.54 16 25 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.06 1.02 8.07 -2.39 -0.02 1.00 16 27 H 0.10 0.83 8.08 -2.39 -0.02 0.81 16 28 H 0.17 1.03 8.06 -2.91 -0.02 1.00 16 29 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 30 H 0.21 2.86 8.06 -2.91 -0.02 2.83 16 31 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 33 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 34 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 36 H 0.12 3.61 7.66 -2.91 -0.02 3.58 16 Total: -1.00 -70.86 326.79 5.99 -64.87 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: 1.10 Total: 1.93 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: 4.93 Total: -11.71 kcal Atomic # 7 Polarization: -84.43 SS G_CDS: -1.30 Total: -85.73 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.76 Total: -14.88 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -70.86 5.99 -64.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291622318.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.965 kcal (2) G-P(sol) polarization free energy of solvation -70.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds