Wall clock time and date at job start Tue Mar 31 2020 05:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38189 * 119.94615 * 2 1 4 4 C 1.38787 * 119.94889 * 180.25825 * 3 2 1 5 5 N 1.39845 * 120.07746 * 180.02562 * 4 3 2 6 6 C 1.46902 * 111.00016 * 295.16587 * 5 4 3 7 7 C 1.46893 * 111.00380 * 59.12421 * 5 4 3 8 8 H 1.09002 * 109.47273 * 296.10178 * 7 5 4 9 9 C 1.52998 * 109.47343 * 176.09844 * 7 5 4 10 10 C 1.50705 * 109.47356 * 56.09942 * 7 5 4 11 11 H 1.08003 * 119.99708 * 359.97438 * 10 7 5 12 12 C 1.37872 * 119.99923 * 180.02562 * 10 7 5 13 13 N 1.31511 * 120.00460 * 359.97438 * 12 10 7 14 14 Si 1.86802 * 119.99707 * 179.97438 * 12 10 7 15 15 H 1.48509 * 109.47044 * 59.99708 * 14 12 10 16 16 H 1.48507 * 109.47268 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47382 * 299.99926 * 14 12 10 18 18 C 1.39115 * 119.84289 * 0.02562 * 4 3 2 19 19 F 1.35095 * 120.06183 * 179.97438 * 18 4 3 20 20 C 1.38244 * 119.88769 * 0.02562 * 18 4 3 21 21 C 1.38233 * 119.93888 * 180.27887 * 2 1 3 22 22 N 1.48003 * 119.92330 * 359.70015 * 21 2 1 23 23 O 1.21800 * 119.99983 * 323.01170 * 22 21 2 24 24 O 1.21801 * 120.00190 * 143.00765 * 22 21 2 25 25 H 1.08999 * 109.47180 * 263.17648 * 1 2 3 26 26 H 1.09004 * 109.47043 * 23.17312 * 1 2 3 27 27 H 1.09005 * 109.47288 * 143.17177 * 1 2 3 28 28 H 1.08001 * 120.02654 * 0.26336 * 3 2 1 29 29 H 1.09000 * 109.46896 * 60.00159 * 6 5 4 30 30 H 1.08995 * 109.47283 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.47289 * 300.00292 * 6 5 4 32 32 H 1.08999 * 109.47422 * 65.47384 * 9 7 5 33 33 H 1.09001 * 109.47327 * 185.47544 * 9 7 5 34 34 H 1.09004 * 109.47197 * 305.47160 * 9 7 5 35 35 H 0.96997 * 119.99897 * 180.02562 * 13 12 10 36 36 H 1.07992 * 119.97813 * 180.02562 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1974 0.0000 4 6 3.5847 1.1975 -0.0054 5 7 4.2855 2.4077 -0.0049 6 6 4.0398 3.1588 -1.2432 7 6 3.9450 3.2128 1.1756 8 1 2.8905 3.4862 1.1371 9 6 4.8004 4.4811 1.1920 10 6 4.2108 2.4114 2.4240 11 1 4.5940 1.4046 2.3479 12 6 3.9639 2.9634 3.6630 13 7 3.4968 4.1892 3.7557 14 14 4.2927 1.9698 5.2103 15 1 5.7293 1.5972 5.2633 16 1 3.9486 2.7838 6.4038 17 1 3.4624 0.7387 5.1940 18 6 4.2770 -0.0092 -0.0114 19 9 5.6280 -0.0143 -0.0172 20 6 3.5802 -1.2032 -0.0124 21 6 2.1969 -1.1979 -0.0058 22 7 1.4538 -2.4778 -0.0053 23 8 0.4223 -2.5829 0.6337 24 8 1.8738 -3.4261 -0.6441 25 1 -0.3633 -0.1221 1.0204 26 1 -0.3633 0.9448 -0.4044 27 1 -0.3634 -0.8226 -0.6160 28 1 1.6564 2.1325 0.0043 29 1 2.9747 3.3718 -1.3336 30 1 4.5970 4.0952 -1.2167 31 1 4.3658 2.5666 -2.0982 32 1 4.5380 5.1075 0.3394 33 1 4.6185 5.0302 2.1159 34 1 5.8544 4.2094 1.1325 35 1 3.3234 4.5776 4.6274 36 1 4.1162 -2.1407 -0.0166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292551090.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:31 Heat of formation + Delta-G solvation = -12.415705 kcal Electronic energy + Delta-G solvation = -22836.525275 eV Core-core repulsion = 19239.026281 eV Total energy + Delta-G solvation = -3597.498995 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.58439 -42.09364 -39.73458 -37.01509 -36.43373 -33.25351 -32.51295 -31.03011 -29.01607 -27.44595 -26.66164 -25.11386 -24.27733 -22.89925 -21.41073 -19.96580 -19.02026 -18.61918 -17.66143 -16.86144 -16.31818 -16.14315 -15.70153 -15.35954 -14.84563 -14.26956 -13.99664 -13.78314 -13.68750 -13.26369 -12.76810 -12.53617 -12.29639 -12.13872 -11.84838 -11.76254 -11.43957 -11.22827 -11.03736 -10.94637 -10.88724 -10.83560 -10.61617 -10.49327 -10.16503 -9.27534 -9.08108 -8.69724 -8.54586 -7.87408 -6.23810 -4.30377 0.12095 1.01350 1.32841 1.52333 3.20793 3.25359 3.28008 3.29282 4.06515 4.24515 4.35592 4.43614 4.62071 4.93021 5.09379 5.22858 5.28822 5.42610 5.53601 5.60603 5.68525 5.74222 5.98392 6.01475 6.11007 6.17606 6.32762 6.53511 6.59012 6.74415 6.78566 7.08974 7.37890 7.56524 7.77736 7.83065 7.98559 8.17760 8.72908 9.36153 10.82009 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.015730 B = 0.006682 C = 0.005888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.558259 B = 4189.456220 C = 4753.942070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.023 4.023 3 C -0.118 4.118 4 C 0.171 3.829 5 N -0.513 5.513 6 C 0.027 3.973 7 C 0.217 3.783 8 H 0.010 0.990 9 C -0.136 4.136 10 C -0.514 4.514 11 H 0.059 0.941 12 C 0.068 3.932 13 N -0.887 5.887 14 Si 0.894 3.106 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.276 1.276 18 C 0.117 3.883 19 F -0.113 7.113 20 C -0.096 4.096 21 C -0.038 4.038 22 N 0.034 4.966 23 O -0.153 6.153 24 O -0.168 6.168 25 H 0.094 0.906 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.150 0.850 29 H 0.025 0.975 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.012 0.988 33 H 0.093 0.907 34 H 0.038 0.962 35 H 0.265 0.735 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.193 -4.379 -8.714 10.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.025 4.025 3 C -0.139 4.139 4 C 0.074 3.926 5 N -0.236 5.236 6 C -0.119 4.119 7 C 0.114 3.886 8 H 0.028 0.972 9 C -0.194 4.194 10 C -0.553 4.553 11 H 0.077 0.923 12 C -0.135 4.135 13 N -0.525 5.525 14 Si 0.722 3.278 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.201 1.201 18 C 0.096 3.904 19 F -0.091 7.091 20 C -0.116 4.116 21 C -0.121 4.121 22 N 0.554 4.446 23 O -0.371 6.371 24 O -0.383 6.383 25 H 0.113 0.887 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.168 0.832 29 H 0.044 0.956 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.031 0.969 33 H 0.112 0.888 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.300 -3.673 -8.553 9.588 hybrid contribution -0.448 -0.627 0.990 1.254 sum -2.748 -4.300 -7.563 9.123 Atomic orbital electron populations 1.20987 0.88949 1.03285 1.04465 1.19571 0.97556 0.90056 0.95323 1.21491 0.94062 0.97538 1.00765 1.19143 0.90384 0.92269 0.90760 1.60078 1.55588 1.03018 1.04892 1.22443 0.99349 0.99060 0.91071 1.19495 0.94171 0.90318 0.84654 0.97215 1.21879 0.98927 0.97328 1.01255 1.20998 1.44255 1.00193 0.89809 0.92319 1.24848 0.94604 0.95007 0.99056 1.69838 1.44151 1.13711 1.24841 0.86598 0.79115 0.80063 0.82064 1.19938 1.20967 1.20122 1.17090 0.77981 0.91702 1.03675 1.91544 1.27074 1.97037 1.93481 1.20541 0.91468 0.99278 1.00362 1.20301 0.91370 0.82947 1.17464 1.43481 1.00461 1.02399 0.98221 1.94519 1.12487 1.89460 1.40651 1.94522 1.71702 1.30695 1.41365 0.88740 0.90438 0.91180 0.83219 0.95627 0.90043 0.92365 0.96863 0.88818 0.94301 0.92511 0.82778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 8.60 36.01 0.31 -1.20 16 2 C -0.02 -0.35 5.87 -104.64 -0.61 -0.96 16 3 C -0.12 -1.94 8.24 -39.40 -0.32 -2.26 16 4 C 0.17 3.13 3.47 -83.67 -0.29 2.84 16 5 N -0.51 -10.04 4.45 -172.60 -0.77 -10.81 16 6 C 0.03 0.43 9.11 60.07 0.55 0.97 16 7 C 0.22 4.94 1.76 -68.87 -0.12 4.81 16 8 H 0.01 0.25 7.22 -51.93 -0.38 -0.13 16 9 C -0.14 -3.01 8.63 37.16 0.32 -2.69 16 10 C -0.51 -13.24 8.04 -34.44 -0.28 -13.52 16 11 H 0.06 1.56 6.98 -52.48 -0.37 1.19 16 12 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 13 N -0.89 -23.64 11.29 55.43 0.63 -23.01 16 14 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 15 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 18 C 0.12 2.08 6.99 -39.25 -0.27 1.81 16 19 F -0.11 -2.11 17.08 2.25 0.04 -2.07 16 20 C -0.10 -1.53 9.63 -39.54 -0.38 -1.91 16 21 C -0.04 -0.61 6.49 -79.92 -0.52 -1.13 16 22 N 0.03 0.55 4.14 33.98 0.14 0.70 16 23 O -0.15 -2.52 16.76 -29.46 -0.49 -3.02 16 24 O -0.17 -2.77 18.93 -29.46 -0.56 -3.33 16 25 H 0.09 1.19 8.11 -51.93 -0.42 0.77 16 26 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 27 H 0.07 0.86 6.98 -51.93 -0.36 0.49 16 28 H 0.15 2.32 7.05 -52.49 -0.37 1.95 16 29 H 0.03 0.37 7.40 -51.93 -0.38 -0.02 16 30 H 0.08 1.24 6.22 -51.93 -0.32 0.91 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.01 0.24 6.62 -51.93 -0.34 -0.10 16 33 H 0.09 2.31 5.94 -51.93 -0.31 2.00 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 36 H 0.15 2.14 8.00 -52.49 -0.42 1.72 16 LS Contribution 308.78 15.07 4.65 4.65 Total: -1.00 -27.19 308.78 -7.17 -34.36 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -4.07 Total: -1.65 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -1.72 Total: -11.57 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.00 Total: -33.13 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -1.05 Total: -6.35 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.19 -7.17 -34.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292551090.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.943 kcal (2) G-P(sol) polarization free energy of solvation -27.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds