Wall clock time and date at job start Tue Mar 31 2020 05:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38193 * 119.94324 * 2 1 4 4 C 1.38786 * 119.95146 * 180.25508 * 3 2 1 5 5 N 1.39844 * 120.08281 * 179.76849 * 4 3 2 6 6 C 1.46897 * 111.00051 * 295.76493 * 5 4 3 7 7 C 1.46901 * 110.99969 * 59.71987 * 5 4 3 8 8 H 1.08997 * 109.47452 * 299.99962 * 7 5 4 9 9 C 1.53002 * 109.47289 * 60.00070 * 7 5 4 10 10 C 1.50705 * 109.47150 * 179.97438 * 7 5 4 11 11 H 1.07996 * 119.99742 * 0.02562 * 10 7 5 12 12 C 1.37875 * 119.99665 * 180.27398 * 10 7 5 13 13 N 1.31516 * 119.99498 * 179.72825 * 12 10 7 14 14 Si 1.86800 * 120.00325 * 359.72819 * 12 10 7 15 15 H 1.48501 * 109.46842 * 90.00018 * 14 12 10 16 16 H 1.48500 * 109.47177 * 209.99797 * 14 12 10 17 17 H 1.48495 * 109.47072 * 330.00123 * 14 12 10 18 18 C 1.39119 * 119.83710 * 359.49168 * 4 3 2 19 19 F 1.35097 * 120.05469 * 180.28092 * 18 4 3 20 20 C 1.38237 * 119.88904 * 0.24901 * 18 4 3 21 21 C 1.38234 * 119.94674 * 179.74496 * 2 1 3 22 22 N 1.48002 * 119.91791 * 0.02562 * 21 2 1 23 23 O 1.21800 * 120.00403 * 173.54679 * 22 21 2 24 24 O 1.21812 * 120.00140 * 353.54579 * 22 21 2 25 25 H 1.08995 * 109.47139 * 263.34409 * 1 2 3 26 26 H 1.08996 * 109.47288 * 23.34513 * 1 2 3 27 27 H 1.09006 * 109.47008 * 143.34487 * 1 2 3 28 28 H 1.08004 * 120.02449 * 359.97438 * 3 2 1 29 29 H 1.09004 * 109.47353 * 183.95066 * 6 5 4 30 30 H 1.08993 * 109.47412 * 303.95678 * 6 5 4 31 31 H 1.09011 * 109.46793 * 63.95661 * 6 5 4 32 32 H 1.08999 * 109.47043 * 300.00042 * 9 7 5 33 33 H 1.09005 * 109.47225 * 59.99508 * 9 7 5 34 34 H 1.08994 * 109.47671 * 179.97438 * 9 7 5 35 35 H 0.97003 * 119.99830 * 180.02562 * 13 12 10 36 36 H 1.08003 * 119.97322 * 179.97438 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1975 0.0000 4 6 3.5846 1.1977 -0.0054 5 7 4.2854 2.4078 -0.0103 6 6 4.0286 3.1599 -1.2457 7 6 3.9554 3.2121 1.1739 8 1 2.8868 3.4271 1.1809 9 6 4.3274 2.4349 2.4382 10 6 4.7282 4.5053 1.1342 11 1 5.3972 4.7094 0.3113 12 6 4.5849 5.4254 2.1509 13 7 5.2634 6.5516 2.1189 14 14 3.4272 5.0726 3.5738 15 1 4.1675 4.3681 4.6513 16 1 2.8853 6.3512 4.0999 17 1 2.3085 4.2179 3.1014 18 6 4.2770 -0.0090 0.0000 19 9 5.6280 -0.0139 0.0006 20 6 3.5803 -1.2029 0.0054 21 6 2.1970 -1.1978 0.0053 22 7 1.4540 -2.4777 0.0105 23 8 2.0547 -3.5312 -0.1034 24 8 0.2416 -2.4778 0.1286 25 1 -0.3633 -0.1191 1.0207 26 1 -0.3634 0.9435 -0.4072 27 1 -0.3633 -0.8245 -0.6136 28 1 1.6562 2.1325 -0.0004 29 1 4.6392 4.0628 -1.2551 30 1 4.2813 2.5413 -2.1068 31 1 2.9744 3.4338 -1.2918 32 1 3.7688 1.4994 2.4672 33 1 5.3960 2.2199 2.4313 34 1 4.0830 3.0317 3.3168 35 1 5.1629 7.1989 2.8344 36 1 4.1164 -2.1405 0.0092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292551095.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:33 Heat of formation + Delta-G solvation = 0.416680 kcal Electronic energy + Delta-G solvation = -22682.856113 eV Core-core repulsion = 19085.913572 eV Total energy + Delta-G solvation = -3596.942541 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.84132 -42.31727 -40.03605 -37.24752 -36.70883 -33.23563 -32.65307 -31.14906 -30.21417 -27.70173 -26.58800 -25.00134 -24.44379 -23.10260 -21.85453 -20.19924 -19.19138 -18.79047 -17.69512 -17.22580 -16.72673 -16.11489 -15.94614 -15.74946 -15.13986 -14.49721 -14.07197 -13.96367 -13.83215 -13.44350 -13.05143 -12.83397 -12.59028 -12.46456 -12.16680 -12.04279 -11.81537 -11.47647 -11.26199 -11.17026 -10.95877 -10.90555 -10.71278 -10.39192 -9.76880 -9.43752 -9.39188 -8.89673 -8.77986 -8.06548 -6.28122 -4.29880 -0.26540 0.70422 1.22353 1.29908 2.98745 3.10528 3.17978 3.23127 3.80317 4.03959 4.18196 4.19043 4.37773 4.62564 4.97526 5.03096 5.10915 5.19671 5.41146 5.44625 5.60987 5.74146 5.79607 5.85980 5.91822 6.04453 6.09494 6.13869 6.27524 6.44525 6.45417 6.55179 6.90058 7.23462 7.43327 7.60291 7.65912 8.34530 8.75897 9.30734 10.83860 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.023795 B = 0.005316 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.452628 B = 5265.969056 C = 5702.202664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.014 4.014 3 C -0.135 4.135 4 C 0.146 3.854 5 N -0.501 5.501 6 C 0.041 3.959 7 C 0.188 3.812 8 H 0.009 0.991 9 C -0.151 4.151 10 C -0.515 4.515 11 H 0.088 0.912 12 C 0.077 3.923 13 N -0.890 5.890 14 Si 0.882 3.118 15 H -0.276 1.276 16 H -0.293 1.293 17 H -0.269 1.269 18 C 0.114 3.886 19 F -0.109 7.109 20 C -0.089 4.089 21 C -0.042 4.042 22 N 0.039 4.961 23 O -0.171 6.171 24 O -0.160 6.160 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.154 0.846 29 H 0.099 0.901 30 H 0.053 0.947 31 H 0.027 0.973 32 H 0.023 0.977 33 H 0.066 0.934 34 H 0.049 0.951 35 H 0.267 0.733 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.469 -11.986 -4.737 14.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.017 4.017 3 C -0.156 4.156 4 C 0.049 3.951 5 N -0.223 5.223 6 C -0.105 4.105 7 C 0.084 3.916 8 H 0.026 0.974 9 C -0.208 4.208 10 C -0.553 4.553 11 H 0.106 0.894 12 C -0.127 4.127 13 N -0.527 5.527 14 Si 0.712 3.288 15 H -0.203 1.203 16 H -0.220 1.220 17 H -0.195 1.195 18 C 0.093 3.907 19 F -0.087 7.087 20 C -0.110 4.110 21 C -0.126 4.126 22 N 0.555 4.445 23 O -0.384 6.384 24 O -0.374 6.374 25 H 0.107 0.893 26 H 0.093 0.907 27 H 0.116 0.884 28 H 0.172 0.828 29 H 0.117 0.883 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.493 -11.263 -4.629 13.800 hybrid contribution -1.165 -0.235 0.980 1.540 sum -7.658 -11.498 -3.649 14.289 Atomic orbital electron populations 1.21299 0.88326 1.04469 1.04585 1.19781 0.98154 0.90010 0.93735 1.21729 0.94161 0.97995 1.01685 1.19639 0.90640 0.93220 0.91561 1.59919 1.54578 1.02336 1.05425 1.22365 1.00156 0.99195 0.88776 1.19899 0.95389 0.92098 0.84245 0.97354 1.22238 1.02167 0.97735 0.98703 1.20843 1.26511 0.98191 1.09781 0.89441 1.24871 0.95290 0.94855 0.97638 1.69851 1.40801 1.08519 1.33519 0.86944 0.81644 0.76870 0.83304 1.20293 1.22034 1.19454 1.17164 0.78238 0.91585 1.03740 1.91581 1.26747 1.96997 1.93386 1.20725 0.91794 0.99591 0.98871 1.20436 0.91411 0.83263 1.17474 1.43431 1.01036 1.02583 0.97496 1.94535 1.70346 1.19759 1.53742 1.94462 0.96208 1.93741 1.52975 0.89287 0.90725 0.88385 0.82794 0.88296 0.92860 0.95482 0.95751 0.91533 0.93216 0.92243 0.81890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 8.67 36.01 0.31 -1.03 16 2 C -0.01 -0.18 5.88 -104.64 -0.62 -0.80 16 3 C -0.13 -1.88 8.25 -39.40 -0.32 -2.20 16 4 C 0.15 2.34 3.31 -83.67 -0.28 2.06 16 5 N -0.50 -9.39 4.45 -172.59 -0.77 -10.16 16 6 C 0.04 0.68 8.98 60.06 0.54 1.22 16 7 C 0.19 4.05 1.43 -68.86 -0.10 3.96 16 8 H 0.01 0.19 6.18 -51.93 -0.32 -0.13 16 9 C -0.15 -3.16 8.55 37.16 0.32 -2.84 16 10 C -0.52 -13.21 8.51 -34.44 -0.29 -13.50 16 11 H 0.09 2.43 6.64 -52.49 -0.35 2.08 16 12 C 0.08 2.06 5.45 -17.82 -0.10 1.96 16 13 N -0.89 -25.49 13.96 55.43 0.77 -24.72 16 14 Si 0.88 20.47 24.37 -169.99 -4.14 16.32 16 15 H -0.28 -6.33 6.86 56.52 0.39 -5.95 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.27 -5.91 6.54 56.52 0.37 -5.55 16 18 C 0.11 1.73 7.31 -39.25 -0.29 1.44 16 19 F -0.11 -1.78 17.08 2.25 0.04 -1.74 16 20 C -0.09 -1.18 9.53 -39.55 -0.38 -1.56 16 21 C -0.04 -0.56 6.83 -79.92 -0.55 -1.11 16 22 N 0.04 0.55 4.45 33.97 0.15 0.70 16 23 O -0.17 -2.50 18.46 -29.46 -0.54 -3.05 16 24 O -0.16 -2.21 15.34 -29.47 -0.45 -2.67 16 25 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 0.64 8.04 -51.93 -0.42 0.23 16 27 H 0.10 1.02 5.86 -51.93 -0.30 0.71 16 28 H 0.15 2.03 7.05 -52.48 -0.37 1.66 16 29 H 0.10 1.84 6.24 -51.93 -0.32 1.51 16 30 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 31 H 0.03 0.41 7.49 -51.92 -0.39 0.02 16 32 H 0.02 0.45 7.22 -51.93 -0.37 0.07 16 33 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.05 1.08 3.25 -51.93 -0.17 0.91 16 35 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.16 1.86 7.62 -52.48 -0.40 1.46 16 LS Contribution 299.60 15.07 4.51 4.51 Total: -1.00 -27.89 299.60 -6.04 -33.93 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -3.87 Total: -0.73 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -1.75 Total: -12.40 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.16 Total: -34.18 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -1.00 Total: -5.71 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.14 Total: 16.32 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.89 -6.04 -33.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292551095.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.347 kcal (2) G-P(sol) polarization free energy of solvation -27.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds