Wall clock time and date at job start Tue Mar 31 2020 05:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99781 * 2 1 4 4 C 1.38753 * 120.05719 * 0.04315 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 359.97438 * 5 4 3 7 7 C 1.38243 * 120.11401 * 359.97438 * 6 5 4 8 8 C 1.38169 * 120.05455 * 0.04496 * 7 6 5 9 9 C 1.50693 * 120.02813 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.47729 * 215.00214 * 9 8 7 11 11 C 1.53010 * 109.46912 * 95.00027 * 9 8 7 12 12 S 1.81403 * 109.47256 * 335.00433 * 9 8 7 13 13 C 1.81402 * 102.99895 * 184.99522 * 12 9 8 14 14 C 1.53006 * 109.46739 * 179.97438 * 13 12 9 15 15 H 1.08995 * 109.47371 * 60.00137 * 14 13 12 16 16 O 1.42904 * 109.47261 * 299.99933 * 14 13 12 17 17 C 1.50704 * 109.46927 * 180.02562 * 14 13 12 18 18 H 1.08007 * 119.99826 * 0.02562 * 17 14 13 19 19 C 1.37874 * 119.99871 * 179.97438 * 17 14 13 20 20 N 1.31510 * 120.00345 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 119.99847 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47170 * 90.00401 * 21 19 17 23 23 H 1.48501 * 109.47238 * 210.00365 * 21 19 17 24 24 H 1.48507 * 109.47345 * 330.00109 * 21 19 17 25 25 H 1.08993 * 109.47145 * 299.99865 * 1 2 3 26 26 H 1.08996 * 109.47124 * 60.00356 * 1 2 3 27 27 H 1.09003 * 109.46763 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.02760 * 359.97438 * 4 3 2 29 29 H 1.07997 * 119.97891 * 180.25368 * 5 4 3 30 30 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 31 31 H 1.07998 * 119.97188 * 180.02562 * 7 6 5 32 32 H 1.08997 * 109.46703 * 59.99990 * 11 9 8 33 33 H 1.08997 * 109.46896 * 180.02562 * 11 9 8 34 34 H 1.09001 * 109.47031 * 300.00108 * 11 9 8 35 35 H 1.08992 * 109.47196 * 299.99882 * 13 12 9 36 36 H 1.09000 * 109.46983 * 60.00354 * 13 12 9 37 37 H 0.96700 * 113.99691 * 300.00575 * 16 14 13 38 38 H 0.97001 * 120.00647 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0009 5 6 1.9207 3.6048 0.0004 6 6 3.3018 3.6758 -0.0005 7 6 4.0559 2.5172 -0.0004 8 6 3.4311 1.2849 -0.0002 9 6 4.2537 0.0223 -0.0006 10 1 3.7466 -0.7417 -0.5899 11 6 4.4273 -0.4738 1.4364 12 16 5.8823 0.3618 -0.7239 13 6 6.6547 -1.2786 -0.7783 14 6 8.0589 -1.1616 -1.3745 15 1 8.6618 -0.4965 -0.7563 16 8 7.9716 -0.6320 -2.6989 17 6 8.7004 -2.5245 -1.4203 18 1 8.1603 -3.3879 -1.0606 19 6 9.9763 -2.6694 -1.9224 20 7 10.6337 -1.6182 -2.3608 21 14 10.7711 -4.3589 -1.9798 22 1 10.4545 -5.0110 -3.2759 23 1 12.2431 -4.2184 -1.8429 24 1 10.2475 -5.1904 -0.8663 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2128 2.3203 0.0012 29 1 1.3339 4.5114 0.0052 30 1 3.7920 4.6382 -0.0014 31 1 5.1344 2.5754 -0.0007 32 1 3.4487 -0.6777 1.8709 33 1 5.0227 -1.3867 1.4361 34 1 4.9345 0.2902 2.0257 35 1 6.7209 -1.6827 0.2318 36 1 6.0520 -1.9436 -1.3969 37 1 7.4483 -1.1738 -3.3053 38 1 11.5315 -1.7200 -2.7137 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296072187.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:24 Heat of formation + Delta-G solvation = -72.414106 kcal Electronic energy + Delta-G solvation = -19482.716958 eV Core-core repulsion = 16416.536663 eV Total energy + Delta-G solvation = -3066.180296 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.33081 -37.52759 -35.79445 -34.18013 -32.13445 -30.32897 -29.87425 -29.17980 -27.41248 -25.25823 -23.97497 -22.22670 -21.43964 -20.67498 -18.10886 -17.12535 -16.51499 -16.12899 -15.86404 -15.01896 -14.62570 -14.52852 -14.41517 -14.08994 -13.92929 -13.77152 -13.36508 -13.27146 -12.65917 -12.34632 -12.09058 -11.85246 -11.57667 -11.48770 -11.26023 -11.21984 -11.10120 -10.88121 -10.77127 -10.57085 -9.99963 -9.37069 -8.96197 -8.87906 -8.59715 -8.23671 -8.16233 -7.00700 -6.03114 -4.23022 1.26362 1.38679 2.25788 3.14966 3.26789 3.27847 3.34306 3.37084 3.72730 4.37805 4.57832 4.74262 4.88662 4.93018 5.05303 5.17108 5.23882 5.26887 5.30348 5.37597 5.42701 5.72353 5.77871 5.88065 5.98236 6.01869 6.10245 6.22927 6.29189 6.37737 6.40027 6.54896 6.73934 6.75603 7.28390 7.66137 7.79965 8.09984 8.78674 9.37848 9.54954 11.00778 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.031303 B = 0.003641 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.274130 B = 7687.852474 C = 8216.558098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C 0.131 3.869 4 C -0.211 4.211 5 C -0.087 4.087 6 C -0.154 4.154 7 C -0.066 4.066 8 C -0.087 4.087 9 C -0.022 4.022 10 H 0.091 0.909 11 C -0.137 4.137 12 S -0.245 6.245 13 C -0.102 4.102 14 C 0.247 3.753 15 H 0.064 0.936 16 O -0.556 6.556 17 C -0.571 4.571 18 H 0.057 0.943 19 C 0.081 3.919 20 N -0.856 5.856 21 Si 0.892 3.108 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.098 0.902 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.143 0.857 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.345 0.655 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.959 6.582 6.161 21.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.226 6.226 3 C 0.085 3.915 4 C -0.229 4.229 5 C -0.105 4.105 6 C -0.172 4.172 7 C -0.085 4.085 8 C -0.088 4.088 9 C -0.151 4.151 10 H 0.110 0.890 11 C -0.196 4.196 12 S -0.016 6.016 13 C -0.251 4.251 14 C 0.188 3.812 15 H 0.082 0.918 16 O -0.358 6.358 17 C -0.611 4.611 18 H 0.075 0.925 19 C -0.126 4.126 20 N -0.491 5.491 21 Si 0.719 3.281 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.117 0.883 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.142 0.858 31 H 0.160 0.840 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.189 0.811 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.905 7.910 6.024 21.360 hybrid contribution -0.707 -2.494 0.130 2.596 sum -19.613 5.415 6.154 21.257 Atomic orbital electron populations 1.23035 0.78711 1.03829 1.01158 1.86101 1.21029 1.26846 1.88657 1.18781 0.91420 0.84277 0.97029 1.21126 0.99681 0.92308 1.09831 1.20909 0.94720 0.96778 0.98073 1.21069 0.93755 0.98456 1.03912 1.21109 1.01016 0.90690 0.95663 1.18755 0.89767 0.94613 1.05677 1.21813 0.96335 0.97240 0.99702 0.89048 1.22004 1.01740 1.01632 0.94244 1.86938 1.13778 1.18742 1.82093 1.24633 1.03178 0.93138 1.04106 1.19139 0.85770 0.94759 0.81569 0.91835 1.86602 1.75310 1.51826 1.22021 1.21559 1.00722 0.93513 1.45272 0.92494 1.25031 0.96810 0.96628 0.94139 1.70080 1.11750 1.28800 1.38489 0.86618 0.78583 0.84327 0.78525 1.20466 1.21025 1.19800 0.92812 0.92742 0.88343 0.85648 0.85999 0.85753 0.83989 0.92300 0.92013 0.91640 0.90735 0.91459 0.81129 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.85 9.63 -19.42 -0.19 -4.04 16 3 C 0.13 1.72 6.66 -39.22 -0.26 1.46 16 4 C -0.21 -2.31 9.04 -39.43 -0.36 -2.66 16 5 C -0.09 -0.91 10.04 -39.60 -0.40 -1.31 16 6 C -0.15 -1.81 10.04 -39.56 -0.40 -2.20 16 7 C -0.07 -0.93 9.10 -39.60 -0.36 -1.29 16 8 C -0.09 -1.27 5.01 -104.48 -0.52 -1.79 16 9 C -0.02 -0.35 2.73 -27.88 -0.08 -0.43 16 10 H 0.09 1.49 7.69 -51.93 -0.40 1.09 16 11 C -0.14 -1.95 9.08 37.16 0.34 -1.62 16 12 S -0.25 -4.66 18.71 -107.50 -2.01 -6.67 16 13 C -0.10 -2.15 5.27 37.16 0.20 -1.95 16 14 C 0.25 6.34 2.88 -27.88 -0.08 6.26 16 15 H 0.06 1.81 8.14 -51.93 -0.42 1.39 16 16 O -0.56 -14.64 12.32 -35.23 -0.43 -15.08 16 17 C -0.57 -15.64 8.76 -34.44 -0.30 -15.95 16 18 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 19 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 20 N -0.86 -25.39 12.84 55.43 0.71 -24.68 16 21 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 25 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 26 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 27 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.13 1.04 6.30 -52.49 -0.33 0.71 16 29 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 30 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.14 2.13 6.48 -52.49 -0.34 1.79 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.89 6.92 -51.93 -0.36 0.53 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.50 7.14 -51.93 -0.37 1.13 16 36 H 0.07 1.37 8.14 -51.92 -0.42 0.94 16 37 H 0.35 8.15 9.04 45.56 0.41 8.56 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 329.95 15.07 4.97 4.97 Total: -1.00 -31.41 329.95 -7.98 -39.39 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -4.68 Total: 8.15 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: -1.33 Total: -18.11 kcal Atomic # 7 Polarization: -25.39 SS G_CDS: 0.71 Total: -24.68 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.62 Total: -19.12 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -4.66 SS G_CDS: -2.01 Total: -6.67 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.41 -7.98 -39.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296072187.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.027 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds