Wall clock time and date at job start Tue Mar 31 2020 05:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31351 * 1 3 3 Si 1.86809 * 119.99973 * 2 1 4 4 H 1.48494 * 109.47316 * 275.85447 * 3 2 1 5 5 H 1.48507 * 109.46852 * 35.85637 * 3 2 1 6 6 H 1.48503 * 109.46902 * 155.85106 * 3 2 1 7 7 C 1.39054 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99735 * 345.76979 * 7 2 1 9 9 N 1.36855 * 119.99892 * 165.77077 * 7 2 1 10 10 C 1.34772 * 120.00244 * 314.92170 * 9 7 2 11 11 O 1.21604 * 120.00029 * 4.46516 * 10 9 7 12 12 C 1.47636 * 120.00180 * 184.18552 * 10 9 7 13 13 C 1.40660 * 120.27823 * 137.27989 * 12 10 9 14 14 N 1.30786 * 121.52940 * 180.02562 * 13 12 10 15 15 C 1.33831 * 121.73139 * 359.97124 * 14 13 12 16 16 C 1.40513 * 120.80846 * 180.02562 * 15 14 13 17 17 C 1.36149 * 119.81540 * 179.97438 * 16 15 14 18 18 C 1.39339 * 121.09423 * 0.03528 * 17 16 15 19 19 C 1.36143 * 120.82761 * 359.97438 * 18 17 16 20 20 C 1.40554 * 119.62275 * 0.02562 * 19 18 17 21 21 C 1.39102 * 120.27571 * 317.00024 * 12 10 9 22 22 C 1.46507 * 119.99950 * 134.92484 * 9 7 2 23 23 C 1.52996 * 117.49655 * 2.56410 * 22 9 7 24 24 C 1.52996 * 60.00018 * 252.51075 * 23 22 9 25 25 H 0.97012 * 120.00031 * 359.97438 * 1 2 3 26 26 H 1.08007 * 119.23459 * 359.97438 * 13 12 10 27 27 H 1.07995 * 120.09053 * 359.97438 * 16 15 14 28 28 H 1.08007 * 119.45077 * 180.02562 * 17 16 15 29 29 H 1.07991 * 119.58519 * 180.02562 * 18 17 16 30 30 H 1.08002 * 120.18805 * 179.97438 * 19 18 17 31 31 H 1.07994 * 121.01694 * 359.97438 * 21 12 10 32 32 H 1.09007 * 115.54993 * 148.26893 * 22 9 7 33 33 H 1.09003 * 117.50170 * 359.97438 * 23 22 9 34 34 H 1.09000 * 117.49632 * 145.02024 * 23 22 9 35 35 H 1.09010 * 117.50121 * 252.51407 * 24 23 22 36 36 H 1.08994 * 117.52103 * 107.48083 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 2.3714 2.1179 -1.3927 5 1 1.5122 2.6139 0.8202 6 1 3.6015 1.4077 0.5728 7 6 2.0088 -1.2042 -0.0005 8 1 1.4937 -2.1252 0.2290 9 7 3.3459 -1.2222 -0.2919 10 6 3.8174 -0.5144 -1.3374 11 8 3.0693 0.2039 -1.9722 12 6 5.2435 -0.6064 -1.7081 13 6 5.6198 -0.7067 -3.0597 14 7 6.8755 -0.7900 -3.4156 15 6 7.8646 -0.7835 -2.5140 16 6 9.2074 -0.8735 -2.9182 17 6 10.1975 -0.8645 -1.9838 18 6 9.9040 -0.7679 -0.6251 19 6 8.6156 -0.6792 -0.1943 20 6 7.5678 -0.6855 -1.1311 21 6 6.2264 -0.5888 -0.7241 22 6 4.2647 -2.0110 0.5327 23 6 3.6606 -2.8401 1.6679 24 6 4.4606 -1.5754 1.9862 25 1 -0.4851 0.8401 0.0004 26 1 4.8539 -0.7160 -3.8212 27 1 9.4532 -0.9495 -3.9670 28 1 11.2277 -0.9335 -2.3010 29 1 10.7086 -0.7625 0.0952 30 1 8.3998 -0.6052 0.8614 31 1 5.9663 -0.5076 0.3209 32 1 5.1274 -2.4250 0.0107 33 1 2.5796 -2.7983 1.8014 34 1 4.1258 -3.7998 1.8928 35 1 5.4522 -1.7031 2.4206 36 1 3.9062 -0.7017 2.3288 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297868196.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:31 Heat of formation + Delta-G solvation = 69.359301 kcal Electronic energy + Delta-G solvation = -21773.882435 eV Core-core repulsion = 18610.698695 eV Total energy + Delta-G solvation = -3163.183739 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.80858 -39.19451 -36.95919 -36.41520 -33.45899 -33.06695 -31.63298 -30.47421 -30.00135 -25.60632 -24.40478 -23.53641 -22.27189 -21.93494 -21.51462 -19.81219 -18.40933 -17.31863 -17.09296 -16.45626 -15.80811 -15.49392 -14.74084 -14.42398 -14.23575 -14.18756 -13.70462 -13.49019 -13.32981 -13.27300 -12.82545 -12.61188 -11.90661 -11.71056 -11.64976 -11.43397 -11.25832 -10.84256 -10.43814 -10.38707 -10.24843 -10.12600 -9.75617 -9.43989 -8.86567 -8.62053 -8.60142 -8.19951 -7.65392 -6.32984 -4.14856 0.37726 0.79913 1.98761 2.80353 3.26253 3.39554 3.61484 3.72890 4.07400 4.21294 4.33617 4.41360 4.56016 4.61537 4.79573 4.85363 5.01034 5.05546 5.13021 5.22123 5.32146 5.33568 5.47145 5.58176 5.60736 5.79943 5.95329 5.98888 6.02660 6.15516 6.19452 6.32906 6.39879 6.53067 6.58548 6.74618 6.85867 7.66707 7.81395 8.02015 8.57133 8.69243 9.22773 9.58994 10.69309 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.022867 B = 0.006070 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.161388 B = 4611.596078 C = 5143.272091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.089 3.911 3 Si 0.927 3.073 4 H -0.255 1.255 5 H -0.312 1.312 6 H -0.284 1.284 7 C -0.342 4.342 8 H 0.101 0.899 9 N -0.418 5.418 10 C 0.486 3.514 11 O -0.535 6.535 12 C -0.151 4.151 13 C 0.177 3.823 14 N -0.482 5.482 15 C 0.127 3.873 16 C -0.094 4.094 17 C -0.105 4.105 18 C -0.125 4.125 19 C -0.090 4.090 20 C -0.105 4.105 21 C -0.045 4.045 22 C 0.054 3.946 23 C -0.168 4.168 24 C -0.201 4.201 25 H 0.276 0.724 26 H 0.168 0.832 27 H 0.133 0.867 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.149 0.851 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.030 -3.238 1.619 18.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.122 4.122 3 Si 0.759 3.241 4 H -0.181 1.181 5 H -0.242 1.242 6 H -0.210 1.210 7 C -0.468 4.468 8 H 0.119 0.881 9 N -0.136 5.136 10 C 0.277 3.723 11 O -0.419 6.419 12 C -0.157 4.157 13 C 0.004 3.996 14 N -0.190 5.190 15 C 0.006 3.994 16 C -0.113 4.113 17 C -0.125 4.125 18 C -0.143 4.143 19 C -0.109 4.109 20 C -0.107 4.107 21 C -0.072 4.072 22 C -0.051 4.051 23 C -0.205 4.205 24 C -0.240 4.240 25 H 0.086 0.914 26 H 0.185 0.815 27 H 0.151 0.849 28 H 0.144 0.856 29 H 0.143 0.857 30 H 0.147 0.853 31 H 0.166 0.834 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 17.753 -2.890 0.423 17.992 hybrid contribution 0.114 0.836 1.038 1.338 sum 17.868 -2.054 1.461 18.045 Atomic orbital electron populations 1.69675 1.06856 1.28635 1.44027 1.25452 0.95095 0.99824 0.91786 0.86021 0.78462 0.81474 0.78130 1.18106 1.24238 1.21005 1.18848 0.80748 0.95731 1.51473 0.88104 1.43028 1.07039 1.41407 1.22117 1.17999 0.86269 0.86031 0.82011 1.90597 1.57530 1.39996 1.53775 1.21352 0.95916 1.03086 0.95323 1.23040 0.92673 0.90025 0.93844 1.68005 1.00113 1.14124 1.36762 1.18988 0.93734 0.98003 0.88709 1.20780 0.90136 1.00037 1.00347 1.20872 0.99308 0.99390 0.92972 1.20852 0.96576 1.00991 0.95914 1.21039 0.92139 0.98659 0.99031 1.18815 0.94134 1.03287 0.94444 1.22259 0.90789 0.93656 1.00500 1.21988 0.96154 1.00141 0.86832 1.23169 1.01835 0.94006 1.01494 1.23352 1.01072 1.00108 0.99424 0.91430 0.81520 0.84909 0.85571 0.85713 0.85262 0.83366 0.86914 0.86840 0.89238 0.89253 0.88299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.39 13.95 55.50 0.77 -24.61 16 2 C 0.09 2.54 4.99 -17.45 -0.09 2.45 16 3 Si 0.93 24.53 24.45 -169.99 -4.16 20.37 16 4 H -0.25 -7.16 6.32 56.52 0.36 -6.81 16 5 H -0.31 -8.07 7.11 56.52 0.40 -7.67 16 6 H -0.28 -7.21 7.04 56.52 0.40 -6.81 16 7 C -0.34 -9.23 8.57 -15.01 -0.13 -9.36 16 8 H 0.10 2.83 7.21 -52.49 -0.38 2.45 16 9 N -0.42 -9.78 2.47 -108.87 -0.27 -10.05 16 10 C 0.49 11.60 5.60 -12.43 -0.07 11.53 16 11 O -0.53 -14.73 12.00 5.27 0.06 -14.67 16 12 C -0.15 -2.96 5.22 -104.83 -0.55 -3.51 16 13 C 0.18 3.24 10.80 -17.08 -0.18 3.06 16 14 N -0.48 -8.33 10.30 -10.66 -0.11 -8.44 16 15 C 0.13 1.99 6.61 -84.78 -0.56 1.43 16 16 C -0.09 -1.18 9.97 -39.48 -0.39 -1.57 16 17 C -0.11 -1.06 9.94 -39.92 -0.40 -1.45 16 18 C -0.13 -1.24 9.96 -39.92 -0.40 -1.64 16 19 C -0.09 -1.05 9.77 -39.46 -0.39 -1.44 16 20 C -0.10 -1.57 5.74 -106.81 -0.61 -2.19 16 21 C -0.05 -0.76 7.44 -38.41 -0.29 -1.05 16 22 C 0.05 0.99 4.40 -67.93 -0.30 0.69 16 23 C -0.17 -2.74 9.80 -26.74 -0.26 -3.01 16 24 C -0.20 -3.22 9.40 -26.73 -0.25 -3.47 16 25 H 0.28 7.70 8.31 -40.81 -0.34 7.36 16 26 H 0.17 2.90 8.06 -52.48 -0.42 2.48 16 27 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 29 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 30 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.15 2.36 5.65 -52.49 -0.30 2.06 16 32 H 0.11 1.85 6.20 -51.93 -0.32 1.53 16 33 H 0.11 2.12 6.60 -51.93 -0.34 1.78 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.09 1.12 8.14 -51.92 -0.42 0.70 16 36 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 LS Contribution 300.56 15.07 4.53 4.53 Total: -1.00 -32.50 300.56 -7.94 -40.44 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -3.91 Total: 1.95 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -4.86 Total: -9.52 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.40 Total: -43.11 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.06 Total: -14.67 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -4.16 Total: 20.37 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.50 -7.94 -40.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297868196.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.800 kcal (2) G-P(sol) polarization free energy of solvation -32.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds