Wall clock time and date at job start Tue Mar 31 2020 05:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31351 * 1 3 3 Si 1.86809 * 119.99973 * 2 1 4 4 H 1.48494 * 109.47316 * 275.85447 * 3 2 1 5 5 H 1.48507 * 109.46852 * 35.85637 * 3 2 1 6 6 H 1.48503 * 109.46902 * 155.85106 * 3 2 1 7 7 C 1.39054 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99735 * 345.76979 * 7 2 1 9 9 N 1.36855 * 119.99892 * 165.77077 * 7 2 1 10 10 C 1.34772 * 120.00244 * 314.92170 * 9 7 2 11 11 O 1.21604 * 120.00029 * 4.46516 * 10 9 7 12 12 C 1.47636 * 120.00180 * 184.18552 * 10 9 7 13 13 C 1.40660 * 120.27823 * 137.27989 * 12 10 9 14 14 N 1.30786 * 121.52940 * 180.02562 * 13 12 10 15 15 C 1.33831 * 121.73139 * 359.97124 * 14 13 12 16 16 C 1.40513 * 120.80846 * 180.02562 * 15 14 13 17 17 C 1.36149 * 119.81540 * 179.97438 * 16 15 14 18 18 C 1.39339 * 121.09423 * 0.03528 * 17 16 15 19 19 C 1.36143 * 120.82761 * 359.97438 * 18 17 16 20 20 C 1.40554 * 119.62275 * 0.02562 * 19 18 17 21 21 C 1.39102 * 120.27571 * 317.00024 * 12 10 9 22 22 C 1.46507 * 119.99950 * 134.92484 * 9 7 2 23 23 C 1.52996 * 117.49655 * 2.56410 * 22 9 7 24 24 C 1.52996 * 60.00018 * 252.51075 * 23 22 9 25 25 H 0.97012 * 120.00031 * 359.97438 * 1 2 3 26 26 H 1.08007 * 119.23459 * 359.97438 * 13 12 10 27 27 H 1.07995 * 120.09053 * 359.97438 * 16 15 14 28 28 H 1.08007 * 119.45077 * 180.02562 * 17 16 15 29 29 H 1.07991 * 119.58519 * 180.02562 * 18 17 16 30 30 H 1.08002 * 120.18805 * 179.97438 * 19 18 17 31 31 H 1.07994 * 121.01694 * 359.97438 * 21 12 10 32 32 H 1.09007 * 115.54993 * 148.26893 * 22 9 7 33 33 H 1.09003 * 117.50170 * 359.97438 * 23 22 9 34 34 H 1.09000 * 117.49632 * 145.02024 * 23 22 9 35 35 H 1.09010 * 117.50121 * 252.51407 * 24 23 22 36 36 H 1.08994 * 117.52103 * 107.48083 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 2.3714 2.1179 -1.3927 5 1 1.5122 2.6139 0.8202 6 1 3.6015 1.4077 0.5728 7 6 2.0088 -1.2042 -0.0005 8 1 1.4937 -2.1252 0.2290 9 7 3.3459 -1.2222 -0.2919 10 6 3.8174 -0.5144 -1.3374 11 8 3.0693 0.2039 -1.9722 12 6 5.2435 -0.6064 -1.7081 13 6 5.6198 -0.7067 -3.0597 14 7 6.8755 -0.7900 -3.4156 15 6 7.8646 -0.7835 -2.5140 16 6 9.2074 -0.8735 -2.9182 17 6 10.1975 -0.8645 -1.9838 18 6 9.9040 -0.7679 -0.6251 19 6 8.6156 -0.6792 -0.1943 20 6 7.5678 -0.6855 -1.1311 21 6 6.2264 -0.5888 -0.7241 22 6 4.2647 -2.0110 0.5327 23 6 3.6606 -2.8401 1.6679 24 6 4.4606 -1.5754 1.9862 25 1 -0.4851 0.8401 0.0004 26 1 4.8539 -0.7160 -3.8212 27 1 9.4532 -0.9495 -3.9670 28 1 11.2277 -0.9335 -2.3010 29 1 10.7086 -0.7625 0.0952 30 1 8.3998 -0.6052 0.8614 31 1 5.9663 -0.5076 0.3209 32 1 5.1274 -2.4250 0.0107 33 1 2.5796 -2.7983 1.8014 34 1 4.1258 -3.7998 1.8928 35 1 5.4522 -1.7031 2.4206 36 1 3.9062 -0.7017 2.3288 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297868196.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:30 Heat of formation + Delta-G solvation = 48.131728 kcal Electronic energy + Delta-G solvation = -21774.802931 eV Core-core repulsion = 18610.698695 eV Total energy + Delta-G solvation = -3164.104236 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.09066 -40.77662 -38.30249 -37.79893 -35.09272 -34.60914 -33.46974 -31.68311 -31.06590 -27.41120 -25.64719 -24.87135 -23.56436 -23.19364 -22.83357 -21.48109 -19.84153 -18.84570 -18.29541 -17.97898 -17.37953 -17.06863 -16.08909 -15.84805 -15.52838 -15.42037 -15.20615 -15.01457 -14.93135 -14.67392 -14.35151 -14.10681 -13.60928 -13.03604 -12.74512 -12.65516 -12.53488 -12.34713 -12.23107 -12.11530 -11.74467 -11.63890 -11.22793 -10.92765 -10.81197 -10.44918 -9.80689 -9.50084 -9.24119 -8.49536 -6.30060 -0.73983 -0.36014 0.88733 1.15042 1.25495 1.45100 1.66325 2.04997 2.36102 2.47574 2.86686 3.04260 3.15189 3.22628 3.52798 3.58642 3.75499 3.89722 3.95065 4.02734 4.12561 4.24870 4.27645 4.37129 4.49894 4.70814 4.82972 4.84358 4.88368 5.02237 5.11237 5.18028 5.39657 5.42108 5.46641 5.50430 5.60321 5.78633 5.90870 6.59830 6.72824 6.77907 7.18072 7.67835 8.56751 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.022867 B = 0.006070 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.161388 B = 4611.596078 C = 5143.272091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.047 3.953 3 Si 0.970 3.030 4 H -0.287 1.287 5 H -0.306 1.306 6 H -0.268 1.268 7 C -0.335 4.335 8 H 0.079 0.921 9 N -0.433 5.433 10 C 0.488 3.512 11 O -0.584 6.584 12 C -0.184 4.184 13 C 0.162 3.838 14 N -0.491 5.491 15 C 0.108 3.892 16 C -0.117 4.117 17 C -0.079 4.079 18 C -0.110 4.110 19 C -0.094 4.094 20 C -0.118 4.118 21 C -0.023 4.023 22 C 0.030 3.970 23 C -0.162 4.162 24 C -0.180 4.180 25 H 0.275 0.725 26 H 0.157 0.843 27 H 0.142 0.858 28 H 0.167 0.833 29 H 0.168 0.832 30 H 0.158 0.842 31 H 0.160 0.840 32 H 0.137 0.863 33 H 0.080 0.920 34 H 0.130 0.870 35 H 0.140 0.860 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.946 -4.018 3.518 24.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.158 4.158 3 Si 0.803 3.197 4 H -0.215 1.215 5 H -0.236 1.236 6 H -0.193 1.193 7 C -0.462 4.462 8 H 0.097 0.903 9 N -0.150 5.150 10 C 0.280 3.720 11 O -0.471 6.471 12 C -0.189 4.189 13 C -0.011 4.011 14 N -0.199 5.199 15 C -0.013 4.013 16 C -0.136 4.136 17 C -0.099 4.099 18 C -0.128 4.128 19 C -0.112 4.112 20 C -0.120 4.120 21 C -0.050 4.050 22 C -0.074 4.074 23 C -0.199 4.199 24 C -0.218 4.218 25 H 0.085 0.915 26 H 0.175 0.825 27 H 0.160 0.840 28 H 0.185 0.815 29 H 0.185 0.815 30 H 0.176 0.824 31 H 0.178 0.822 32 H 0.154 0.846 33 H 0.099 0.901 34 H 0.148 0.852 35 H 0.158 0.842 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 23.705 -3.697 2.360 24.108 hybrid contribution -1.300 0.961 0.397 1.665 sum 22.405 -2.736 2.756 22.739 Atomic orbital electron populations 1.69744 1.07804 1.28910 1.47563 1.25978 0.95506 1.01944 0.92420 0.85310 0.78579 0.79586 0.76252 1.21522 1.23621 1.19288 1.18687 0.82777 0.94463 1.50306 0.90301 1.43145 1.06530 1.42074 1.23299 1.18675 0.87944 0.84227 0.81126 1.90542 1.59472 1.41980 1.55115 1.20908 0.93636 1.07792 0.96593 1.22851 0.93246 0.91619 0.93364 1.67999 0.99868 1.14365 1.37658 1.19540 0.94610 0.97991 0.89150 1.21026 0.89186 1.01524 1.01829 1.21430 1.00586 0.95193 0.92690 1.21414 0.96937 0.97778 0.96621 1.21395 0.91876 0.98129 0.99816 1.19015 0.94117 1.03884 0.94942 1.22389 0.91120 0.91275 1.00190 1.22276 0.96398 1.01195 0.87486 1.23216 1.00460 0.96217 1.00056 1.23444 1.03008 0.98663 0.96692 0.91510 0.82527 0.83994 0.81543 0.81458 0.82445 0.82225 0.84594 0.90099 0.85193 0.84202 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.54 13.95 21.68 0.30 -56.24 16 2 C 0.05 2.81 4.99 84.96 0.42 3.23 16 3 Si 0.97 52.82 24.45 68.60 1.68 54.50 16 4 H -0.29 -17.00 6.32 99.48 0.63 -16.38 16 5 H -0.31 -15.98 7.11 99.48 0.71 -15.28 16 6 H -0.27 -13.52 7.04 99.48 0.70 -12.82 16 7 C -0.34 -18.97 8.57 84.11 0.72 -18.25 16 8 H 0.08 4.71 7.21 -2.91 -0.02 4.69 16 9 N -0.43 -20.73 2.47 -616.61 -1.53 -22.26 16 10 C 0.49 24.13 5.60 86.73 0.49 24.62 16 11 O -0.58 -34.04 12.00 -4.04 -0.05 -34.09 16 12 C -0.18 -7.28 5.22 -20.00 -0.10 -7.38 16 13 C 0.16 6.14 10.80 85.44 0.92 7.07 16 14 N -0.49 -16.87 10.30 -187.63 -1.93 -18.81 16 15 C 0.11 3.14 6.61 40.27 0.27 3.41 16 16 C -0.12 -2.46 9.97 22.34 0.22 -2.24 16 17 C -0.08 -1.08 9.94 22.05 0.22 -0.86 16 18 C -0.11 -1.37 9.96 22.05 0.22 -1.15 16 19 C -0.09 -1.63 9.77 22.35 0.22 -1.41 16 20 C -0.12 -3.13 5.74 -21.28 -0.12 -3.25 16 21 C -0.02 -0.73 7.44 23.03 0.17 -0.56 16 22 C 0.03 1.07 4.40 44.99 0.20 1.26 16 23 C -0.16 -5.02 9.80 30.59 0.30 -4.72 16 24 C -0.18 -5.22 9.40 30.59 0.29 -4.93 16 25 H 0.28 16.31 8.31 -92.70 -0.77 15.54 16 26 H 0.16 5.96 8.06 -2.91 -0.02 5.93 16 27 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 28 H 0.17 1.02 8.06 -2.91 -0.02 0.99 16 29 H 0.17 0.82 8.06 -2.92 -0.02 0.80 16 30 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 31 H 0.16 4.54 5.65 -2.91 -0.02 4.52 16 32 H 0.14 4.11 6.20 -2.38 -0.01 4.09 16 33 H 0.08 3.08 6.60 -2.39 -0.02 3.06 16 34 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16 35 H 0.14 2.66 8.14 -2.38 -0.02 2.64 16 36 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -78.24 300.56 3.92 -74.32 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 1.02 Total: 7.75 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 4.43 Total: -5.18 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -3.16 Total: -97.30 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -0.05 Total: -34.09 kcal Atomic # 14 Polarization: 52.82 SS G_CDS: 1.68 Total: 54.50 kcal Total: -78.24 3.92 -74.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297868196.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.452 kcal (2) G-P(sol) polarization free energy of solvation -78.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds