Wall clock time and date at job start Tue Mar 31 2020 05:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39802 * 119.97402 * 140.74471 * 3 2 1 5 5 C 1.36601 * 120.02097 * 179.97438 * 4 3 2 6 6 C 1.40005 * 119.97687 * 359.97438 * 5 4 3 7 7 C 1.47068 * 120.02085 * 179.97438 * 6 5 4 8 8 C 1.35020 * 119.99893 * 179.97438 * 7 6 5 9 9 C 1.46271 * 120.00260 * 180.02562 * 8 7 6 10 10 O 1.21761 * 120.00049 * 4.22299 * 9 8 7 11 11 N 1.34777 * 120.00100 * 184.22250 * 9 8 7 12 12 C 1.36624 * 119.99835 * 176.42401 * 11 9 8 13 13 H 1.07996 * 120.00327 * 228.86465 * 12 11 9 14 14 C 1.39199 * 119.99832 * 48.86993 * 12 11 9 15 15 N 1.31275 * 119.99897 * 195.83296 * 14 12 11 16 16 Si 1.86802 * 120.00328 * 15.83245 * 14 12 11 17 17 H 1.48501 * 109.46894 * 267.20863 * 16 14 12 18 18 H 1.48502 * 109.46923 * 27.20527 * 16 14 12 19 19 H 1.48494 * 109.47259 * 147.20595 * 16 14 12 20 20 C 1.46496 * 120.00346 * 356.42441 * 11 9 8 21 21 C 1.53003 * 117.50210 * 187.06647 * 20 11 9 22 22 C 1.52997 * 117.50020 * 118.43881 * 20 11 9 23 23 C 1.39996 * 119.95228 * 0.25092 * 6 5 4 24 24 C 1.36602 * 119.97709 * 359.51259 * 23 6 5 25 25 H 1.08000 * 119.99503 * 359.97438 * 4 3 2 26 26 H 1.08007 * 120.01323 * 179.97438 * 5 4 3 27 27 H 1.07992 * 120.00050 * 0.02562 * 7 6 5 28 28 H 1.08004 * 119.99516 * 0.02562 * 8 7 6 29 29 H 0.97001 * 120.00422 * 179.97438 * 15 14 12 30 30 H 1.09008 * 115.54765 * 332.77445 * 20 11 9 31 31 H 1.08998 * 117.49674 * 359.97438 * 21 20 11 32 32 H 1.08998 * 117.49875 * 145.02217 * 21 20 11 33 33 H 1.08999 * 117.49836 * 214.98328 * 22 20 11 34 34 H 1.08995 * 117.49863 * 359.97438 * 22 20 11 35 35 H 1.08002 * 120.00943 * 179.74211 * 23 6 5 36 36 H 1.07996 * 119.98360 * 180.21142 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2661 0.9387 -0.7663 5 6 4.6321 0.9405 -0.7666 6 6 5.3330 0.0029 0.0013 7 6 6.8037 0.0036 0.0012 8 6 7.4793 -0.9005 0.7423 9 6 8.9420 -0.8995 0.7428 10 8 9.5504 -0.0364 0.1367 11 7 9.6163 -1.8540 1.4141 12 6 10.9806 -1.8964 1.3547 13 1 11.4831 -2.8275 1.1380 14 6 11.7230 -0.7395 1.5738 15 7 12.9863 -0.6934 1.2197 16 14 10.9219 0.7474 2.3716 17 1 10.3975 1.6524 1.3174 18 1 9.8041 0.3005 3.2411 19 1 11.9270 1.4715 3.1905 20 6 8.8865 -2.8461 2.2074 21 6 9.7090 -3.7993 3.0768 22 6 9.0302 -4.3156 1.8065 23 6 4.6330 -0.9390 0.7646 24 6 3.2670 -0.9361 0.7673 25 1 2.7252 1.6622 -1.3583 26 1 5.1712 1.6650 -1.3590 27 1 7.3433 0.7278 -0.5909 28 1 6.9395 -1.6245 1.3348 29 1 13.5036 0.1129 1.3720 30 1 7.9195 -2.5215 2.5917 31 1 10.7932 -3.6885 3.0582 32 1 9.2833 -4.1019 4.0335 33 1 8.1579 -4.9579 1.9275 34 1 9.6674 -4.5442 0.9522 35 1 5.1728 -1.6654 1.3540 36 1 2.7268 -1.6604 1.3587 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299205683.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:40 Heat of formation + Delta-G solvation = 82.600608 kcal Electronic energy + Delta-G solvation = -20473.478875 eV Core-core repulsion = 17310.869321 eV Total energy + Delta-G solvation = -3162.609553 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.83220 -39.11567 -36.80914 -36.48399 -33.99894 -32.97907 -31.62335 -31.51185 -29.95083 -26.06655 -24.17152 -22.97952 -22.04495 -21.70604 -20.76801 -19.24521 -18.83084 -17.40839 -16.35768 -15.83064 -15.55577 -15.05926 -14.77414 -14.47220 -14.28252 -13.86330 -13.72665 -13.62983 -13.41370 -13.07554 -12.92322 -12.76757 -12.57209 -12.08906 -11.83588 -11.40892 -11.22071 -11.01832 -10.94376 -10.57015 -10.33264 -10.09317 -10.00247 -9.86967 -9.38145 -8.71319 -8.62620 -8.20138 -7.52332 -6.32249 -4.11661 0.16594 1.15127 1.84677 2.42687 2.89050 3.34882 3.40347 3.57121 3.65479 3.70359 4.05986 4.20360 4.41493 4.53728 4.58903 4.59487 4.72391 5.02908 5.08547 5.18919 5.22667 5.38237 5.48270 5.52187 5.56044 5.69346 5.79721 5.97924 6.04194 6.08211 6.09043 6.20399 6.53792 6.54564 6.64639 6.70230 6.81338 7.23998 7.71534 7.92970 8.64431 8.80876 9.27228 9.70234 10.72530 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.023512 B = 0.004077 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.579632 B = 6866.602876 C = 7661.523391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C 0.260 3.740 3 C -0.046 4.046 4 C -0.066 4.066 5 C -0.111 4.111 6 C -0.010 4.010 7 C -0.093 4.093 8 C -0.148 4.148 9 C 0.473 3.527 10 O -0.545 6.545 11 N -0.424 5.424 12 C -0.341 4.341 13 H 0.096 0.904 14 C 0.094 3.906 15 N -0.859 5.859 16 Si 0.907 3.093 17 H -0.253 1.253 18 H -0.277 1.277 19 H -0.303 1.303 20 C 0.058 3.942 21 C -0.171 4.171 22 C -0.196 4.196 23 C -0.120 4.120 24 C -0.064 4.064 25 H 0.132 0.868 26 H 0.138 0.862 27 H 0.138 0.862 28 H 0.123 0.877 29 H 0.275 0.725 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.137 0.863 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.286 -1.361 0.755 15.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.055 4.055 3 C -0.049 4.049 4 C -0.086 4.086 5 C -0.130 4.130 6 C -0.011 4.011 7 C -0.113 4.113 8 C -0.169 4.169 9 C 0.266 3.734 10 O -0.429 6.429 11 N -0.143 5.143 12 C -0.468 4.468 13 H 0.113 0.887 14 C -0.117 4.117 15 N -0.493 5.493 16 Si 0.737 3.263 17 H -0.178 1.178 18 H -0.202 1.202 19 H -0.232 1.232 20 C -0.048 4.048 21 C -0.209 4.209 22 C -0.235 4.235 23 C -0.138 4.138 24 C -0.084 4.084 25 H 0.150 0.850 26 H 0.156 0.844 27 H 0.155 0.845 28 H 0.140 0.860 29 H 0.085 0.915 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.155 0.845 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.515 -0.857 0.441 16.543 hybrid contribution 0.162 0.560 0.492 0.763 sum -16.353 -0.297 0.934 16.382 Atomic orbital electron populations 1.81247 1.12161 1.08284 1.08665 1.25788 0.92718 0.93522 0.93491 1.16080 0.84127 1.00948 1.03790 1.20828 0.94278 0.96696 0.96807 1.21080 0.93475 0.99038 0.99367 1.19422 0.93498 0.93893 0.94266 1.22214 0.90629 0.98984 0.99514 1.23536 0.95458 0.98637 0.99255 1.18211 0.86919 0.85864 0.82446 1.90696 1.69301 1.37115 1.45759 1.43008 1.06240 1.25462 1.39545 1.18697 0.78203 0.98366 1.51489 0.88696 1.25416 0.94512 0.98666 0.93089 1.69655 1.08734 1.29485 1.41441 0.86399 0.78456 0.83159 0.78326 1.17849 1.20221 1.23205 1.21883 0.97017 0.86596 0.99282 1.23173 1.01575 1.02438 0.93705 1.23276 1.03008 0.97320 0.99883 1.21151 0.93579 0.99245 0.99782 1.20821 0.94204 0.96686 0.96704 0.85003 0.84423 0.84459 0.85964 0.91508 0.87227 0.86890 0.89372 0.89394 0.88638 0.84489 0.84979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.44 18.54 41.84 0.78 -4.66 16 2 C 0.26 2.73 15.32 -22.47 -0.34 2.38 16 3 C -0.05 -0.42 5.74 -106.80 -0.61 -1.03 16 4 C -0.07 -0.55 9.69 -39.59 -0.38 -0.93 16 5 C -0.11 -1.04 9.73 -39.51 -0.38 -1.43 16 6 C -0.01 -0.11 5.87 -105.00 -0.62 -0.73 16 7 C -0.09 -1.35 9.45 -37.15 -0.35 -1.70 16 8 C -0.15 -2.45 8.69 -37.50 -0.33 -2.77 16 9 C 0.47 10.71 5.92 -13.03 -0.08 10.64 16 10 O -0.54 -14.51 12.13 5.13 0.06 -14.45 16 11 N -0.42 -9.67 2.38 -109.35 -0.26 -9.93 16 12 C -0.34 -9.15 8.08 -15.06 -0.12 -9.27 16 13 H 0.10 2.67 7.80 -52.49 -0.41 2.26 16 14 C 0.09 2.65 4.93 -17.43 -0.09 2.57 16 15 N -0.86 -25.33 13.95 55.51 0.77 -24.56 16 16 Si 0.91 23.30 24.99 -169.99 -4.25 19.05 16 17 H -0.25 -6.80 6.39 56.52 0.36 -6.43 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.30 -7.63 7.11 56.52 0.40 -7.22 16 20 C 0.06 1.00 5.83 -67.93 -0.40 0.61 16 21 C -0.17 -2.77 9.83 -26.73 -0.26 -3.03 16 22 C -0.20 -2.98 10.30 -26.73 -0.28 -3.25 16 23 C -0.12 -1.14 9.35 -39.51 -0.37 -1.51 16 24 C -0.06 -0.54 9.69 -39.59 -0.38 -0.92 16 25 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 26 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 27 H 0.14 2.16 7.53 -52.49 -0.40 1.76 16 28 H 0.12 1.60 4.25 -52.48 -0.22 1.37 16 29 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.11 1.57 6.47 -51.92 -0.34 1.23 16 31 H 0.11 2.13 6.94 -51.93 -0.36 1.77 16 32 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.10 1.63 8.14 -51.93 -0.42 1.20 16 35 H 0.14 1.14 6.15 -52.49 -0.32 0.82 16 36 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 LS Contribution 317.05 15.07 4.78 4.78 Total: -1.00 -32.79 317.05 -6.87 -39.66 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -3.76 Total: 0.50 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -4.99 Total: -10.39 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 1.29 Total: -39.15 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: 0.06 Total: -14.45 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -4.25 Total: 19.05 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.79 -6.87 -39.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299205683.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.262 kcal (2) G-P(sol) polarization free energy of solvation -32.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds