Wall clock time and date at job start Tue Mar 31 2020 05:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31257 * 1 3 3 Si 1.86801 * 120.00175 * 2 1 4 4 H 1.48493 * 109.47161 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47080 * 120.00033 * 3 2 1 6 6 H 1.48503 * 109.47295 * 240.00037 * 3 2 1 7 7 C 1.39198 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00604 * 170.02325 * 7 2 1 9 9 N 1.36658 * 119.99795 * 350.01950 * 7 2 1 10 10 C 1.34779 * 120.00003 * 151.43207 * 9 7 2 11 11 O 1.21615 * 119.99898 * 355.42429 * 10 9 7 12 12 C 1.47675 * 119.99986 * 175.41868 * 10 9 7 13 13 C 1.39062 * 121.11855 * 47.12124 * 12 10 9 14 14 C 1.39163 * 119.56646 * 179.69385 * 13 12 10 15 15 N 1.31053 * 121.89880 * 0.64222 * 14 13 12 16 16 C 1.33566 * 121.84962 * 359.65326 * 15 14 13 17 17 C 1.40698 * 120.96250 * 180.02562 * 16 15 14 18 18 C 1.36085 * 119.74202 * 180.02562 * 17 16 15 19 19 C 1.39324 * 121.04166 * 359.95265 * 18 17 16 20 20 C 1.36280 * 120.83807 * 0.02562 * 19 18 17 21 21 C 1.40052 * 119.64120 * 0.02562 * 20 19 18 22 22 C 1.46504 * 119.99940 * 331.44014 * 9 7 2 23 23 C 1.53000 * 117.49599 * 313.29846 * 22 9 7 24 24 C 1.52998 * 117.49547 * 244.63958 * 22 9 7 25 25 H 0.97001 * 120.00286 * 355.04049 * 1 2 3 26 26 H 1.08005 * 120.22090 * 359.97438 * 13 12 10 27 27 H 1.07996 * 119.05305 * 180.27627 * 14 13 12 28 28 H 1.08000 * 120.12873 * 359.95109 * 17 16 15 29 29 H 1.07997 * 119.47666 * 179.97438 * 18 17 16 30 30 H 1.08003 * 119.58248 * 180.02562 * 19 18 17 31 31 H 1.08001 * 120.18175 * 180.02562 * 20 19 18 32 32 H 1.08999 * 115.54907 * 98.97341 * 22 9 7 33 33 H 1.08999 * 117.50088 * 0.02562 * 23 22 9 34 34 H 1.09002 * 117.49473 * 145.01958 * 23 22 9 35 35 H 1.08997 * 117.50233 * 214.98226 * 24 22 9 36 36 H 1.09006 * 117.49803 * 0.02562 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2466 1.6177 0.0000 4 1 1.2817 2.7464 0.0006 5 1 3.1004 1.6963 1.2125 6 1 3.1004 1.6964 -1.2125 7 6 2.0086 -1.2055 -0.0005 8 1 3.0763 -1.2125 -0.1626 9 7 1.3408 -2.3801 0.2041 10 6 1.8088 -3.5239 -0.3339 11 8 2.7772 -3.4984 -1.0691 12 6 1.1458 -4.8080 -0.0303 13 6 -0.2370 -4.9372 -0.1011 14 6 -0.8275 -6.1643 0.1856 15 7 -0.1183 -7.2093 0.5353 16 6 1.2130 -7.1579 0.6301 17 6 1.9562 -8.2917 1.0068 18 6 3.3118 -8.2112 1.0960 19 6 3.9807 -7.0210 0.8187 20 6 3.2937 -5.9030 0.4504 21 6 1.8976 -5.9497 0.3497 22 6 0.1161 -2.3961 1.0079 23 6 0.1377 -1.6489 2.3429 24 6 0.1438 -3.1795 2.3218 25 1 -0.4850 0.8369 0.0726 26 1 -0.8484 -4.0921 -0.3811 27 1 -1.9018 -6.2566 0.1236 28 1 1.4528 -9.2218 1.2255 29 1 3.8780 -9.0840 1.3859 30 1 5.0572 -6.9837 0.8965 31 1 3.8230 -4.9860 0.2375 32 1 -0.8165 -2.3921 0.4439 33 1 1.0629 -1.1451 2.6229 34 1 -0.7810 -1.1536 2.6573 35 1 -0.7707 -3.6906 2.6224 36 1 1.0733 -3.6827 2.5883 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299441480.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:32 Heat of formation + Delta-G solvation = 62.687632 kcal Electronic energy + Delta-G solvation = -21952.032278 eV Core-core repulsion = 18788.559233 eV Total energy + Delta-G solvation = -3163.473045 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.62464 -38.68185 -36.73383 -36.20570 -33.38703 -32.69104 -31.31800 -30.23691 -29.66944 -25.76829 -24.11707 -23.26260 -22.37614 -21.61541 -21.40738 -19.34643 -17.87211 -17.12590 -16.94117 -16.39321 -15.32233 -15.25351 -14.53426 -14.27579 -14.17104 -13.93055 -13.83691 -13.53456 -13.23945 -13.00832 -12.41916 -12.17670 -11.52054 -11.43121 -11.34157 -11.17724 -11.02261 -10.80507 -10.65228 -10.47820 -10.10751 -9.85419 -9.53407 -9.42541 -8.98534 -8.48585 -8.46248 -7.89879 -7.83945 -6.45903 -4.06229 0.59870 1.12624 2.18472 3.10348 3.17327 3.19089 3.21086 3.76177 3.97711 4.42817 4.52438 4.55217 4.60568 4.97730 5.03595 5.06901 5.17357 5.27757 5.41983 5.46678 5.60258 5.70518 5.81684 5.86870 5.95400 6.16617 6.23230 6.28606 6.31288 6.36018 6.60618 6.63623 6.77135 6.83966 6.87707 7.02081 7.12919 7.40248 7.95943 8.18282 8.31161 8.99395 9.19766 9.77474 10.57460 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.024590 B = 0.005823 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.395804 B = 4807.135864 C = 5392.117289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.045 3.955 3 Si 0.923 3.077 4 H -0.282 1.282 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.312 4.312 8 H 0.098 0.902 9 N -0.396 5.396 10 C 0.480 3.520 11 O -0.575 6.575 12 C -0.018 4.018 13 C -0.156 4.156 14 C 0.132 3.868 15 N -0.484 5.484 16 C 0.127 3.873 17 C -0.105 4.105 18 C -0.102 4.102 19 C -0.134 4.134 20 C -0.074 4.074 21 C -0.078 4.078 22 C 0.122 3.878 23 C -0.142 4.142 24 C -0.215 4.215 25 H 0.271 0.729 26 H 0.143 0.857 27 H 0.158 0.842 28 H 0.131 0.869 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.142 0.858 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.035 -9.125 4.711 10.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.161 4.161 3 Si 0.749 3.251 4 H -0.208 1.208 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.440 4.440 8 H 0.116 0.884 9 N -0.112 5.112 10 C 0.269 3.731 11 O -0.460 6.460 12 C -0.030 4.030 13 C -0.177 4.177 14 C -0.039 4.039 15 N -0.193 5.193 16 C 0.005 3.995 17 C -0.124 4.124 18 C -0.121 4.121 19 C -0.152 4.152 20 C -0.093 4.093 21 C -0.081 4.081 22 C 0.017 3.983 23 C -0.179 4.179 24 C -0.253 4.253 25 H 0.081 0.919 26 H 0.161 0.839 27 H 0.175 0.825 28 H 0.148 0.852 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.159 0.841 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.056 -9.747 4.496 10.786 hybrid contribution 0.548 1.782 -0.128 1.868 sum -0.508 -7.966 4.368 9.099 Atomic orbital electron populations 1.69820 1.06037 1.28322 1.45293 1.25352 0.95394 0.99651 0.95753 0.86052 0.79175 0.80596 0.79294 1.20753 1.19795 1.19574 1.19532 0.93171 0.82252 1.49037 0.88421 1.42944 1.21472 1.06144 1.40675 1.17728 0.87531 0.83096 0.84750 1.90645 1.29467 1.86178 1.39685 1.20765 0.93719 0.94644 0.93876 1.22474 0.94577 0.99483 1.01145 1.22786 1.00006 0.87886 0.93219 1.67786 1.06347 1.31087 1.14122 1.18796 0.89662 0.92614 0.98432 1.20694 0.93501 0.97188 1.00999 1.20841 0.94215 0.97914 0.99170 1.20910 1.00166 0.92950 1.01163 1.21341 0.92854 0.99747 0.95328 1.18732 0.94828 0.93420 1.01074 1.21257 0.89656 1.01990 0.85414 1.22774 1.02467 0.91981 1.00688 1.23509 1.01975 0.95683 1.04168 0.91852 0.83929 0.82516 0.85157 0.85773 0.85843 0.84054 0.87281 0.89059 0.89526 0.89397 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.25 10.82 55.51 0.60 -20.65 16 2 C 0.05 1.12 4.77 -17.44 -0.08 1.04 16 3 Si 0.92 19.71 29.57 -169.99 -5.03 14.69 16 4 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 5 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.31 -8.24 8.71 -15.04 -0.13 -8.37 16 8 H 0.10 2.70 7.56 -52.49 -0.40 2.30 16 9 N -0.40 -9.70 2.90 -108.86 -0.32 -10.02 16 10 C 0.48 11.68 6.67 -12.41 -0.08 11.60 16 11 O -0.57 -15.71 15.14 5.26 0.08 -15.63 16 12 C -0.02 -0.37 4.60 -104.34 -0.48 -0.85 16 13 C -0.16 -2.72 7.67 -38.93 -0.30 -3.02 16 14 C 0.13 2.02 11.13 -17.54 -0.20 1.82 16 15 N -0.48 -8.14 10.30 -11.03 -0.11 -8.25 16 16 C 0.13 2.21 6.61 -84.87 -0.56 1.65 16 17 C -0.11 -1.53 9.98 -39.43 -0.39 -1.92 16 18 C -0.10 -1.32 9.94 -39.95 -0.40 -1.72 16 19 C -0.13 -1.95 9.96 -39.88 -0.40 -2.35 16 20 C -0.07 -1.35 9.21 -39.61 -0.36 -1.72 16 21 C -0.08 -1.50 5.76 -106.51 -0.61 -2.11 16 22 C 0.12 2.56 2.29 -67.93 -0.16 2.41 16 23 C -0.14 -2.77 8.63 -26.69 -0.23 -3.00 16 24 C -0.22 -3.89 8.48 -26.69 -0.23 -4.12 16 25 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 26 H 0.14 2.40 6.14 -52.48 -0.32 2.08 16 27 H 0.16 1.79 8.06 -52.49 -0.42 1.36 16 28 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 31 H 0.14 2.85 6.25 -52.49 -0.33 2.53 16 32 H 0.11 2.31 6.86 -51.93 -0.36 1.95 16 33 H 0.09 1.93 7.93 -51.93 -0.41 1.52 16 34 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 35 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 36 H 0.08 1.57 8.11 -51.93 -0.42 1.15 16 LS Contribution 304.15 15.07 4.58 4.58 Total: -1.00 -29.53 304.15 -8.71 -38.24 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -3.91 Total: 7.69 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -4.61 Total: -10.66 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.17 Total: -38.92 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.08 Total: -15.63 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.69 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.53 -8.71 -38.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299441480.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.929 kcal (2) G-P(sol) polarization free energy of solvation -29.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds