Wall clock time and date at job start Tue Mar 31 2020 05:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38603 * 119.54841 * 2 1 4 4 C 1.38586 * 119.35667 * 179.97438 * 3 2 1 5 5 C 1.38627 * 118.48794 * 0.25395 * 4 3 2 6 6 C 1.39286 * 119.06209 * 359.50237 * 5 4 3 7 7 C 1.48121 * 119.72860 * 180.24870 * 6 5 4 8 8 O 1.21532 * 119.99570 * 0.25844 * 7 6 5 9 9 N 1.34774 * 120.00542 * 180.25209 * 7 6 5 10 10 C 1.39844 * 120.00421 * 174.89161 * 9 7 6 11 11 C 1.39310 * 119.94864 * 325.55058 * 10 9 7 12 12 C 1.38484 * 120.42534 * 179.71760 * 11 10 9 13 13 C 1.37695 * 120.32096 * 0.55117 * 12 11 10 14 14 C 1.40745 * 119.88944 * 359.72491 * 13 12 11 15 15 C 1.41414 * 120.20652 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99779 * 25.13392 * 15 14 13 17 17 C 1.39926 * 119.99856 * 205.13498 * 15 14 13 18 18 N 1.30825 * 120.00156 * 16.78731 * 17 15 14 19 19 Si 1.86797 * 119.99784 * 196.78898 * 17 15 14 20 20 H 1.48500 * 109.47284 * 90.00025 * 19 17 15 21 21 H 1.48510 * 109.46974 * 209.99796 * 19 17 15 22 22 H 1.48503 * 109.47504 * 329.99761 * 19 17 15 23 23 C 1.38268 * 119.94702 * 145.81422 * 10 9 7 24 24 N 1.31498 * 119.54778 * 179.97438 * 2 1 3 25 25 H 1.08993 * 109.46903 * 90.00361 * 1 2 3 26 26 H 1.09007 * 109.46756 * 209.99803 * 1 2 3 27 27 H 1.08999 * 109.47295 * 329.99883 * 1 2 3 28 28 H 1.08004 * 120.32210 * 359.95809 * 3 2 1 29 29 H 1.07996 * 120.75402 * 179.97438 * 4 3 2 30 30 H 1.08003 * 120.46357 * 179.72516 * 5 4 3 31 31 H 0.97005 * 119.99721 * 354.89623 * 9 7 6 32 32 H 1.07993 * 119.78949 * 359.96991 * 11 10 9 33 33 H 1.07992 * 119.84047 * 180.24875 * 12 11 10 34 34 H 1.08003 * 120.05200 * 179.74429 * 13 12 11 35 35 H 0.97005 * 120.00521 * 180.02562 * 18 17 15 36 36 H 1.08003 * 120.16278 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.2058 0.0000 4 6 3.5764 1.2011 0.0005 5 6 4.2335 -0.0195 -0.0043 6 6 3.4823 -1.1924 0.0010 7 6 4.1692 -2.5047 0.0015 8 8 5.3835 -2.5548 0.0020 9 7 3.4478 -3.6431 0.0015 10 6 4.0924 -4.8794 -0.1059 11 6 5.2420 -4.9992 -0.8836 12 6 5.8915 -6.2175 -0.9921 13 6 5.4010 -7.3272 -0.3410 14 6 4.2372 -7.2227 0.4437 15 6 3.7280 -8.3579 1.1157 16 1 4.3881 -9.1715 1.3778 17 6 2.3688 -8.4270 1.4411 18 7 1.5146 -7.6276 0.8557 19 14 1.7742 -9.6608 2.7114 20 1 1.8106 -9.0396 4.0597 21 1 0.3825 -10.0686 2.3917 22 1 2.6567 -10.8550 2.6926 23 6 3.5845 -5.9823 0.5556 24 7 2.1555 -1.1440 0.0005 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6484 2.1399 -0.0007 29 1 4.1317 2.1274 0.0001 30 1 5.3128 -0.0603 -0.0085 31 1 2.4814 -3.6048 0.0759 32 1 5.6315 -4.1355 -1.4018 33 1 6.7842 -6.2987 -1.5943 34 1 5.9087 -8.2761 -0.4320 35 1 0.5724 -7.6753 1.0816 36 1 2.6912 -5.8914 1.1556 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313442776.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:14 Heat of formation + Delta-G solvation = 16.300049 kcal Electronic energy + Delta-G solvation = -20571.480129 eV Core-core repulsion = 17405.995567 eV Total energy + Delta-G solvation = -3165.484561 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.66239 -39.13185 -37.11580 -34.32739 -33.35143 -33.10942 -32.47235 -29.52981 -28.51964 -27.77859 -25.25154 -24.68284 -22.43033 -21.36284 -21.00014 -19.68448 -17.81605 -17.39935 -16.50989 -16.13979 -15.51870 -15.09491 -14.86750 -14.66426 -14.49938 -14.05571 -13.70303 -13.28422 -13.06347 -12.76795 -12.47693 -12.42823 -12.29418 -12.04537 -11.61322 -11.23871 -11.12072 -10.72332 -10.64964 -10.15003 -10.07230 -9.81870 -9.70525 -9.44777 -9.18688 -9.08577 -8.93501 -7.36102 -6.98864 -6.66511 -4.34687 0.59702 1.07931 2.59953 2.87064 3.09256 3.12784 3.17563 3.28830 3.52932 3.91925 3.95865 4.06957 4.50257 4.67185 4.79158 4.85787 4.95521 5.29414 5.39520 5.42651 5.44287 5.69708 5.82323 5.94829 5.96052 6.29276 6.46676 6.64971 6.71919 6.92361 7.07287 7.08924 7.27955 7.59486 7.64438 7.78189 7.94785 8.05365 8.17835 8.35764 8.56338 8.75513 8.91393 8.97914 10.22053 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.019192 B = 0.004316 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.575203 B = 6485.423474 C = 7681.243031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.125 3.875 3 C -0.157 4.157 4 C -0.079 4.079 5 C -0.121 4.121 6 C 0.094 3.906 7 C 0.560 3.440 8 O -0.520 6.520 9 N -0.640 5.640 10 C 0.142 3.858 11 C -0.227 4.227 12 C -0.086 4.086 13 C -0.227 4.227 14 C 0.120 3.880 15 C -0.464 4.464 16 H 0.079 0.921 17 C 0.077 3.923 18 N -0.798 5.798 19 Si 0.908 3.092 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.178 4.178 24 N -0.459 5.459 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.138 0.862 29 H 0.141 0.859 30 H 0.149 0.851 31 H 0.413 0.587 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.279 0.721 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.797 15.714 -0.668 16.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.015 4.015 3 C -0.177 4.177 4 C -0.105 4.105 5 C -0.142 4.142 6 C -0.044 4.044 7 C 0.344 3.656 8 O -0.395 6.395 9 N -0.283 5.283 10 C 0.050 3.950 11 C -0.248 4.248 12 C -0.104 4.104 13 C -0.247 4.247 14 C 0.117 3.883 15 C -0.494 4.494 16 H 0.097 0.903 17 C -0.140 4.140 18 N -0.424 5.424 19 Si 0.732 3.268 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.186 1.186 23 C -0.199 4.199 24 N -0.171 5.171 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.156 0.844 29 H 0.159 0.841 30 H 0.166 0.834 31 H 0.249 0.751 32 H 0.119 0.881 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.647 14.929 -0.699 15.384 hybrid contribution -0.400 0.361 0.544 0.766 sum -4.047 15.291 -0.155 15.818 Atomic orbital electron populations 1.20743 0.88344 1.03759 1.03345 1.21349 0.97222 0.87948 0.94974 1.22151 0.95038 0.99320 1.01206 1.21596 0.94403 0.98220 0.96298 1.22131 1.02414 0.91744 0.97931 1.21314 0.89500 0.94475 0.99124 1.17882 0.86699 0.83132 0.77847 1.90790 1.12775 1.86655 1.49299 1.43314 1.11002 1.04424 1.69553 1.17640 0.95173 0.83390 0.98773 1.20295 0.99688 0.97543 1.07247 1.20409 0.97981 0.92896 0.99157 1.21048 1.01939 0.96953 1.04759 1.17361 0.90130 0.91916 0.88863 1.19545 0.93432 1.03304 1.33087 0.90314 1.25874 0.96826 0.96210 0.95133 1.69813 1.03751 1.34402 1.34405 0.86322 0.78242 0.81012 0.81181 1.19363 1.20373 1.18640 1.21096 1.03976 0.91058 1.03786 1.67450 1.08725 1.30073 1.10892 0.90195 0.90021 0.90639 0.84439 0.84136 0.83358 0.75091 0.88126 0.88966 0.88799 0.90986 0.85875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 10.17 36.01 0.37 -0.51 16 2 C 0.13 1.45 6.78 -82.60 -0.56 0.89 16 3 C -0.16 -1.47 9.75 -39.32 -0.38 -1.85 16 4 C -0.08 -0.78 10.17 -39.31 -0.40 -1.18 16 5 C -0.12 -1.60 9.63 -39.05 -0.38 -1.98 16 6 C 0.09 1.53 6.75 -83.02 -0.56 0.97 16 7 C 0.56 11.20 7.54 -12.20 -0.09 11.11 16 8 O -0.52 -11.64 14.07 5.34 0.08 -11.57 16 9 N -0.64 -13.53 5.32 -10.69 -0.06 -13.59 16 10 C 0.14 3.50 6.25 -83.79 -0.52 2.97 16 11 C -0.23 -5.57 8.66 -39.09 -0.34 -5.91 16 12 C -0.09 -2.05 10.02 -39.69 -0.40 -2.44 16 13 C -0.23 -5.74 9.79 -38.83 -0.38 -6.12 16 14 C 0.12 3.26 5.57 -106.85 -0.59 2.67 16 15 C -0.46 -12.40 9.05 -37.74 -0.34 -12.74 16 16 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 17 C 0.08 1.92 5.16 -17.35 -0.09 1.84 16 18 N -0.80 -20.46 10.94 55.55 0.61 -19.86 16 19 Si 0.91 18.76 29.59 -169.99 -5.03 13.73 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 23 C -0.18 -4.69 8.60 -38.68 -0.33 -5.02 16 24 N -0.46 -6.89 9.46 -6.06 -0.06 -6.94 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 28 H 0.14 0.82 8.06 -52.48 -0.42 0.39 16 29 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 30 H 0.15 1.89 7.64 -52.48 -0.40 1.49 16 31 H 0.41 8.04 8.16 -40.82 -0.33 7.71 16 32 H 0.10 2.43 6.47 -52.49 -0.34 2.09 16 33 H 0.09 1.93 8.06 -52.49 -0.42 1.50 16 34 H 0.09 2.21 8.06 -52.48 -0.42 1.79 16 35 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 36 H 0.12 3.30 6.17 -52.48 -0.32 2.98 16 LS Contribution 315.79 15.07 4.76 4.76 Total: -1.00 -30.73 315.79 -8.61 -39.34 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -3.90 Total: 11.44 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -5.00 Total: -17.31 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.49 Total: -40.39 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.08 Total: -11.57 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.73 -8.61 -39.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313442776.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.639 kcal (2) G-P(sol) polarization free energy of solvation -30.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds