Wall clock time and date at job start Tue Mar 31 2020 05:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38345 * 120.35098 * 2 1 4 4 N 1.31928 * 121.08752 * 180.02562 * 3 2 1 5 5 C 1.31701 * 121.87621 * 359.72760 * 4 3 2 6 6 C 1.39536 * 120.56233 * 0.53674 * 5 4 3 7 7 C 1.47804 * 120.55968 * 179.74998 * 6 5 4 8 8 O 1.21564 * 120.00207 * 179.72094 * 7 6 5 9 9 N 1.34780 * 119.99904 * 0.02562 * 7 6 5 10 10 C 1.39862 * 120.00132 * 174.58729 * 9 7 6 11 11 C 1.39309 * 119.94713 * 146.35119 * 10 9 7 12 12 C 1.38489 * 120.42333 * 179.97438 * 11 10 9 13 13 C 1.37688 * 120.32266 * 0.02562 * 12 11 10 14 14 C 1.40747 * 119.88888 * 0.02562 * 13 12 11 15 15 C 1.41406 * 120.20411 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99942 * 151.78770 * 15 14 13 17 17 C 1.39930 * 120.00250 * 331.79026 * 15 14 13 18 18 N 1.30821 * 119.99965 * 348.99170 * 17 15 14 19 19 Si 1.86806 * 119.99793 * 168.99070 * 17 15 14 20 20 H 1.48499 * 109.47060 * 94.99194 * 19 17 15 21 21 H 1.48503 * 109.46747 * 214.98917 * 19 17 15 22 22 H 1.48495 * 109.47454 * 334.98973 * 19 17 15 23 23 C 1.38255 * 119.94714 * 326.07821 * 10 9 7 24 24 C 1.38354 * 120.34063 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.46791 * 269.97626 * 1 2 3 26 26 H 1.09000 * 109.47125 * 29.97152 * 1 2 3 27 27 H 1.08999 * 109.47089 * 149.97868 * 1 2 3 28 28 H 1.08004 * 119.45830 * 0.02562 * 3 2 1 29 29 H 1.07993 * 119.71255 * 180.28994 * 5 4 3 30 30 H 0.97001 * 120.00010 * 354.58645 * 9 7 6 31 31 H 1.07994 * 119.79071 * 359.97405 * 11 10 9 32 32 H 1.07997 * 119.83479 * 180.02562 * 12 11 10 33 33 H 1.08000 * 120.04889 * 179.97438 * 13 12 11 34 34 H 0.97012 * 120.00057 * 179.97438 * 18 17 15 35 35 H 1.08006 * 120.16629 * 359.97438 * 23 10 9 36 36 H 1.08000 * 120.86134 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2061 1.1938 0.0000 4 7 3.5253 1.2108 -0.0005 5 6 4.2351 0.1014 0.0043 6 6 3.6055 -1.1438 -0.0011 7 6 4.4022 -2.3887 -0.0013 8 8 3.8431 -3.4682 -0.0009 9 7 5.7485 -2.3272 0.0043 10 6 6.5018 -3.5001 0.1184 11 6 7.7285 -3.6050 -0.5334 12 6 8.4827 -4.7616 -0.4267 13 6 8.0274 -5.8215 0.3250 14 6 6.7893 -5.7304 0.9883 15 6 6.3151 -6.8151 1.7616 16 1 5.6590 -6.6342 2.6003 17 6 6.6957 -8.1227 1.4404 18 7 7.3073 -8.3669 0.3100 19 14 6.3305 -9.5196 2.6256 20 1 5.0543 -10.1743 2.2409 21 1 7.4323 -10.5139 2.5733 22 1 6.2145 -8.9813 4.0047 23 6 6.0303 -4.5515 0.8825 24 6 2.2059 -1.1940 -0.0005 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6630 2.1274 0.0004 29 1 5.3136 0.1561 0.0084 30 1 6.1952 -1.4694 -0.0708 31 1 8.0937 -2.7791 -1.1256 32 1 9.4326 -4.8325 -0.9357 33 1 8.6189 -6.7215 0.4048 34 1 7.5716 -9.2734 0.0874 35 1 5.0816 -4.4694 1.3921 36 1 1.6857 -2.1405 -0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313444367.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:52 Heat of formation + Delta-G solvation = 16.600526 kcal Electronic energy + Delta-G solvation = -20440.802740 eV Core-core repulsion = 17275.331208 eV Total energy + Delta-G solvation = -3165.471532 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.73902 -39.24682 -37.14313 -34.62664 -33.84894 -33.09318 -32.13651 -29.83018 -28.31477 -27.43527 -25.33574 -24.56298 -22.88289 -21.47898 -20.86617 -19.64933 -18.06751 -17.42016 -16.86397 -16.37215 -15.45074 -15.10434 -14.91468 -14.59874 -14.41310 -14.13116 -13.58784 -13.26239 -13.08369 -12.92831 -12.86614 -12.80820 -12.26575 -12.00621 -11.72316 -11.32614 -11.10276 -10.70798 -10.51496 -10.26815 -9.92717 -9.86811 -9.77692 -9.46720 -9.19698 -9.14444 -8.91704 -7.43446 -6.92860 -6.66963 -4.35265 0.52678 1.01555 2.63525 2.83629 3.10243 3.15020 3.17638 3.25879 3.45263 3.82289 3.98242 4.12227 4.49851 4.64054 4.67963 4.74871 4.77534 5.01027 5.28410 5.31121 5.44705 5.68497 5.70498 5.90249 5.98722 6.22101 6.36291 6.38274 6.68700 6.97819 7.01585 7.06503 7.26255 7.51681 7.65274 7.69648 7.94319 8.07491 8.11830 8.23582 8.56980 8.68531 8.93841 8.97120 10.26592 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.024010 B = 0.003801 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.893719 B = 7365.150483 C = 8305.480231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.146 4.146 3 C 0.113 3.887 4 N -0.484 5.484 5 C 0.124 3.876 6 C -0.170 4.170 7 C 0.550 3.450 8 O -0.506 6.506 9 N -0.660 5.660 10 C 0.147 3.853 11 C -0.257 4.257 12 C -0.094 4.094 13 C -0.166 4.166 14 C 0.119 3.881 15 C -0.458 4.458 16 H 0.076 0.924 17 C 0.073 3.927 18 N -0.801 5.801 19 Si 0.911 3.089 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.207 4.207 24 C -0.021 4.021 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.158 0.842 29 H 0.159 0.841 30 H 0.398 0.602 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.122 0.878 34 H 0.279 0.721 35 H 0.106 0.894 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.860 14.132 -0.613 16.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.148 4.148 3 C -0.044 4.044 4 N -0.192 5.192 5 C -0.034 4.034 6 C -0.175 4.175 7 C 0.336 3.664 8 O -0.381 6.381 9 N -0.304 5.304 10 C 0.056 3.944 11 C -0.278 4.278 12 C -0.113 4.113 13 C -0.186 4.186 14 C 0.116 3.884 15 C -0.488 4.488 16 H 0.095 0.905 17 C -0.143 4.143 18 N -0.427 5.427 19 Si 0.736 3.264 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.185 1.185 23 C -0.228 4.228 24 C -0.047 4.047 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.176 0.824 29 H 0.176 0.824 30 H 0.233 0.767 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.140 0.860 34 H 0.090 0.910 35 H 0.124 0.876 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.754 13.970 -0.738 15.995 hybrid contribution -0.308 -1.042 0.273 1.120 sum -8.063 12.928 -0.465 15.243 Atomic orbital electron populations 1.20735 0.89651 1.03392 1.02889 1.20937 0.97998 0.93741 1.02089 1.22857 0.89955 0.97594 0.93966 1.67684 1.08048 1.30947 1.12504 1.22977 1.00304 0.86841 0.93322 1.21142 0.95260 0.94972 1.06168 1.18038 0.82330 0.88331 0.77743 1.90857 1.70688 1.29141 1.47455 1.43333 1.05436 1.09499 1.72103 1.17410 0.91951 0.86238 0.98816 1.20065 0.98048 0.99821 1.09853 1.20490 0.97970 0.93507 0.99307 1.21430 0.96859 0.98187 1.02100 1.17500 0.89889 0.90989 0.90042 1.19553 1.26000 0.90431 1.12785 0.90539 1.25880 0.93116 1.00362 0.94943 1.69801 1.30541 1.22430 1.19895 0.86254 0.78749 0.80070 0.81363 1.19602 1.20104 1.18516 1.20985 1.00941 0.95571 1.05306 1.21689 0.92531 0.99124 0.91365 0.90647 0.91010 0.90944 0.82431 0.82378 0.76740 0.89157 0.88905 0.85998 0.91009 0.87562 0.83376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.03 36.01 0.36 -0.38 16 2 C -0.15 -1.47 5.89 -104.54 -0.62 -2.08 16 3 C 0.11 1.14 10.85 -17.47 -0.19 0.95 16 4 N -0.48 -5.85 10.35 -12.91 -0.13 -5.99 16 5 C 0.12 1.52 10.71 -17.12 -0.18 1.34 16 6 C -0.17 -2.44 5.89 -104.82 -0.62 -3.05 16 7 C 0.55 10.13 7.51 -12.35 -0.09 10.04 16 8 O -0.51 -11.54 14.13 5.31 0.08 -11.46 16 9 N -0.66 -11.85 5.28 -10.77 -0.06 -11.90 16 10 C 0.15 3.33 6.26 -83.79 -0.52 2.81 16 11 C -0.26 -5.62 9.97 -39.09 -0.39 -6.00 16 12 C -0.09 -2.18 10.02 -39.69 -0.40 -2.58 16 13 C -0.17 -4.35 8.66 -38.84 -0.34 -4.69 16 14 C 0.12 3.27 5.55 -106.85 -0.59 2.67 16 15 C -0.46 -12.58 9.06 -37.74 -0.34 -12.93 16 16 H 0.08 2.04 7.87 -52.49 -0.41 1.63 16 17 C 0.07 1.90 5.25 -17.35 -0.09 1.81 16 18 N -0.80 -21.19 10.81 55.55 0.60 -20.59 16 19 Si 0.91 19.22 29.57 -169.99 -5.03 14.19 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 23 C -0.21 -5.36 8.39 -38.68 -0.32 -5.68 16 24 C -0.02 -0.27 9.39 -38.86 -0.37 -0.63 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 27 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 28 H 0.16 1.07 8.06 -52.48 -0.42 0.65 16 29 H 0.16 1.57 6.44 -52.49 -0.34 1.23 16 30 H 0.40 5.45 6.90 -40.82 -0.28 5.17 16 31 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 33 H 0.12 3.28 6.18 -52.49 -0.32 2.96 16 34 H 0.28 6.71 8.30 -40.81 -0.34 6.37 16 35 H 0.11 2.83 6.44 -52.48 -0.34 2.49 16 36 H 0.15 1.91 7.74 -52.49 -0.41 1.50 16 LS Contribution 313.27 15.07 4.72 4.72 Total: -1.00 -31.92 313.27 -8.29 -40.21 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -3.77 Total: 9.24 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -4.70 Total: -18.42 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.41 Total: -38.48 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.08 Total: -11.46 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.92 -8.29 -40.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313444367.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.813 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds