Wall clock time and date at job start Tue Mar 31 2020 05:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38626 * 120.47375 * 2 1 4 4 C 1.38579 * 118.49153 * 179.97438 * 3 2 1 5 5 C 1.38598 * 119.35963 * 359.97438 * 4 3 2 6 6 N 1.31497 * 120.90035 * 0.02562 * 5 4 3 7 7 C 1.32758 * 121.64085 * 359.72479 * 6 5 4 8 8 C 1.48128 * 119.72806 * 180.29026 * 7 6 5 9 9 O 1.21522 * 120.00245 * 186.16945 * 8 7 6 10 10 N 1.34775 * 120.00027 * 6.16981 * 8 7 6 11 11 C 1.39836 * 120.00225 * 184.68362 * 10 8 7 12 12 C 1.39314 * 119.95060 * 324.23018 * 11 10 8 13 13 C 1.38479 * 120.42802 * 179.71896 * 12 11 10 14 14 C 1.37692 * 120.32463 * 0.56296 * 13 12 11 15 15 C 1.40747 * 119.88711 * 359.71750 * 14 13 12 16 16 C 1.41405 * 120.20828 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00352 * 212.25935 * 16 15 14 18 18 C 1.39933 * 119.99805 * 32.25802 * 16 15 14 19 19 N 1.30830 * 119.99933 * 7.09060 * 18 16 15 20 20 Si 1.86803 * 120.00278 * 187.08563 * 18 16 15 21 21 H 1.48500 * 109.46812 * 60.00334 * 20 18 16 22 22 H 1.48499 * 109.47495 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47020 * 300.00631 * 20 18 16 24 24 C 1.38270 * 119.95179 * 144.51005 * 11 10 8 25 25 H 1.08992 * 109.47517 * 97.25012 * 1 2 3 26 26 H 1.08999 * 109.47095 * 337.24077 * 1 2 3 27 27 H 1.09002 * 109.47239 * 217.25089 * 1 2 3 28 28 H 1.07999 * 120.75142 * 0.02562 * 3 2 1 29 29 H 1.08002 * 120.32446 * 179.97438 * 4 3 2 30 30 H 1.07995 * 119.55195 * 179.97438 * 5 4 3 31 31 H 0.97005 * 119.99829 * 4.68384 * 10 8 7 32 32 H 1.07998 * 119.78434 * 0.02562 * 12 11 10 33 33 H 1.08004 * 119.83759 * 180.25474 * 13 12 11 34 34 H 1.08000 * 120.05456 * 179.74168 * 14 13 12 35 35 H 0.96997 * 119.99981 * 179.97438 * 19 18 16 36 36 H 1.07999 * 120.15983 * 359.97420 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1948 0.0000 4 6 3.5949 1.1468 0.0005 5 6 4.2323 -0.0839 0.0016 6 7 3.5409 -1.2024 0.0016 7 6 2.2133 -1.2006 0.0060 8 6 1.4770 -2.4858 0.0123 9 8 0.2667 -2.4933 -0.0967 10 7 2.1493 -3.6470 0.1390 11 6 1.4666 -4.8639 0.0469 12 6 0.1738 -4.9763 0.5539 13 6 -0.5135 -6.1750 0.4627 14 6 0.0782 -7.2731 -0.1203 15 6 1.3859 -7.1763 -0.6317 16 6 2.0000 -8.2996 -1.2323 17 1 3.0684 -8.4367 -1.1550 18 6 1.2232 -9.2337 -1.9267 19 7 -0.0462 -8.9994 -2.1400 20 14 1.9986 -10.8151 -2.5492 21 1 2.5437 -11.5841 -1.4017 22 1 0.9712 -11.6287 -3.2476 23 1 3.0974 -10.4893 -3.4934 24 6 2.0777 -5.9555 -0.5421 25 1 -0.3634 -0.1297 -1.0193 26 1 -0.3633 0.9476 0.3976 27 1 -0.3634 -0.8180 0.6221 28 1 1.6901 2.1414 0.0004 29 1 4.1722 2.0597 0.0001 30 1 5.3115 -0.1249 0.0016 31 1 3.1068 -3.6386 0.2942 32 1 -0.2972 -4.1216 1.0165 33 1 -1.5169 -6.2503 0.8553 34 1 -0.4603 -8.2070 -0.1853 35 1 -0.5845 -9.6467 -2.6217 36 1 3.0814 -5.8706 -0.9318 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313453393.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:54 Heat of formation + Delta-G solvation = 22.156282 kcal Electronic energy + Delta-G solvation = -20621.644638 eV Core-core repulsion = 17456.414022 eV Total energy + Delta-G solvation = -3165.230616 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.79534 -39.10897 -37.14125 -34.66717 -33.56717 -32.93088 -32.09019 -29.78226 -28.51728 -27.21890 -25.22347 -24.61243 -22.47375 -21.55703 -20.87642 -19.89581 -17.89882 -17.51584 -16.67848 -15.75606 -15.39761 -15.26929 -14.95529 -14.83685 -14.46358 -13.75383 -13.61356 -13.32201 -12.95104 -12.82596 -12.73475 -12.39372 -12.16543 -12.00784 -11.63730 -11.15508 -11.09993 -10.91608 -10.46933 -10.18837 -9.97446 -9.85935 -9.51207 -9.32070 -9.19785 -9.04157 -8.86953 -7.38489 -6.89868 -6.60327 -4.34718 0.57041 1.04581 2.62981 2.86326 3.11147 3.13344 3.14707 3.27544 3.51040 3.87230 4.00340 4.17220 4.57538 4.70020 4.75025 4.75931 4.85284 5.22712 5.42234 5.57851 5.68493 5.76356 5.84140 6.02434 6.23572 6.30651 6.49708 6.60581 6.80644 6.95694 7.02615 7.08575 7.30634 7.57151 7.61988 7.74009 8.01526 8.08025 8.15645 8.34671 8.59384 8.71264 8.95211 8.99667 10.33104 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.031143 B = 0.003624 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.858404 B = 7725.423578 C = 8333.459664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.073 4.073 3 C -0.088 4.088 4 C -0.151 4.151 5 C 0.088 3.912 6 N -0.455 5.455 7 C 0.079 3.921 8 C 0.560 3.440 9 O -0.511 6.511 10 N -0.644 5.644 11 C 0.142 3.858 12 C -0.217 4.217 13 C -0.101 4.101 14 C -0.154 4.154 15 C 0.121 3.879 16 C -0.469 4.469 17 H 0.075 0.925 18 C 0.074 3.926 19 N -0.808 5.808 20 Si 0.912 3.088 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.267 1.267 24 C -0.232 4.232 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.101 0.899 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.161 0.839 31 H 0.410 0.590 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.120 0.880 35 H 0.279 0.721 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.218 16.316 3.699 17.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.076 4.076 3 C -0.114 4.114 4 C -0.171 4.171 5 C -0.072 4.072 6 N -0.166 5.166 7 C -0.059 4.059 8 C 0.345 3.655 9 O -0.387 6.387 10 N -0.286 5.286 11 C 0.051 3.949 12 C -0.238 4.238 13 C -0.121 4.121 14 C -0.174 4.174 15 C 0.118 3.882 16 C -0.500 4.500 17 H 0.094 0.906 18 C -0.142 4.142 19 N -0.435 5.435 20 Si 0.737 3.263 21 H -0.190 1.190 22 H -0.205 1.205 23 H -0.192 1.192 24 C -0.253 4.253 25 H 0.098 0.902 26 H 0.076 0.924 27 H 0.120 0.880 28 H 0.157 0.843 29 H 0.156 0.844 30 H 0.179 0.821 31 H 0.245 0.755 32 H 0.125 0.875 33 H 0.111 0.889 34 H 0.138 0.862 35 H 0.090 0.910 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.568 15.384 3.483 16.422 hybrid contribution 0.545 0.260 -0.460 0.759 sum 5.114 15.644 3.023 16.734 Atomic orbital electron populations 1.21073 0.88878 1.03202 1.04299 1.20981 0.98561 0.92317 0.95786 1.21541 0.94159 0.98036 0.97705 1.22337 0.95277 0.99766 0.99730 1.22773 1.00448 0.87343 0.96628 1.67577 1.07221 1.31956 1.09812 1.21173 0.89751 0.93904 1.01054 1.17856 0.86798 0.82937 0.77868 1.90741 1.12853 1.86130 1.48943 1.43266 1.12095 1.04367 1.68896 1.17495 0.93497 0.83617 1.00337 1.20490 0.95239 0.98249 1.09811 1.20636 0.97852 0.93392 1.00170 1.21439 0.97201 0.98039 1.00726 1.17380 0.91611 0.90827 0.88367 1.19441 0.95173 1.05135 1.30256 0.90641 1.25840 0.94617 0.99011 0.94745 1.69778 1.06875 1.34661 1.32172 0.86314 0.79479 0.81062 0.79447 1.18997 1.20451 1.19175 1.20856 1.01512 0.92986 1.09958 0.90191 0.92366 0.88035 0.84258 0.84391 0.82149 0.75465 0.87505 0.88918 0.86214 0.91032 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 8.73 36.00 0.31 -1.15 16 2 C -0.07 -0.95 5.93 -104.09 -0.62 -1.57 16 3 C -0.09 -0.85 9.83 -39.31 -0.39 -1.23 16 4 C -0.15 -1.28 10.11 -39.32 -0.40 -1.67 16 5 C 0.09 0.90 11.18 -17.56 -0.20 0.70 16 6 N -0.45 -6.35 9.57 -9.80 -0.09 -6.44 16 7 C 0.08 1.23 6.75 -83.01 -0.56 0.67 16 8 C 0.56 10.57 7.59 -12.20 -0.09 10.48 16 9 O -0.51 -10.66 10.78 5.35 0.06 -10.61 16 10 N -0.64 -12.62 5.30 -10.69 -0.06 -12.67 16 11 C 0.14 3.32 6.27 -83.79 -0.53 2.80 16 12 C -0.22 -5.21 8.70 -39.09 -0.34 -5.55 16 13 C -0.10 -2.48 10.02 -39.69 -0.40 -2.88 16 14 C -0.15 -4.10 8.64 -38.83 -0.34 -4.43 16 15 C 0.12 3.27 5.52 -106.85 -0.59 2.68 16 16 C -0.47 -12.60 9.05 -37.74 -0.34 -12.94 16 17 H 0.08 1.93 7.86 -52.49 -0.41 1.52 16 18 C 0.07 1.89 5.30 -17.34 -0.09 1.79 16 19 N -0.81 -21.47 10.89 55.55 0.61 -20.86 16 20 Si 0.91 19.10 29.57 -169.99 -5.03 14.07 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 C -0.23 -5.76 9.71 -38.68 -0.38 -6.14 16 25 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.06 0.54 8.05 -51.93 -0.42 0.13 16 27 H 0.10 1.51 5.88 -51.93 -0.31 1.20 16 28 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 30 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 31 H 0.41 7.09 8.19 -40.82 -0.33 6.75 16 32 H 0.11 2.49 6.25 -52.49 -0.33 2.17 16 33 H 0.09 2.03 8.06 -52.48 -0.42 1.61 16 34 H 0.12 3.26 6.36 -52.49 -0.33 2.93 16 35 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 36 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 310.04 15.07 4.67 4.67 Total: -1.00 -30.55 310.04 -8.58 -39.13 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -3.80 Total: 11.16 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -4.93 Total: -18.45 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.45 Total: -39.98 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.06 Total: -10.61 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.55 -8.58 -39.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313453393.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.288 kcal (2) G-P(sol) polarization free energy of solvation -30.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds