Wall clock time and date at job start Tue Mar 31 2020 05:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38392 * 120.44659 * 2 1 4 4 C 1.38806 * 118.49519 * 180.02562 * 3 2 1 5 5 C 1.38116 * 119.31267 * 0.02562 * 4 3 2 6 6 N 1.31904 * 120.85391 * 359.71858 * 5 4 3 7 7 C 1.32397 * 121.63138 * 0.56968 * 6 5 4 8 8 N 1.39288 * 119.70078 * 179.70783 * 7 6 5 9 9 C 1.34780 * 119.99589 * 359.72577 * 8 7 6 10 10 O 1.21590 * 120.00287 * 0.02562 * 9 8 7 11 11 C 1.47582 * 119.99468 * 179.97438 * 9 8 7 12 12 C 1.40047 * 119.89416 * 179.97438 * 11 9 8 13 13 C 1.36301 * 120.10089 * 179.70482 * 12 11 9 14 14 C 1.40896 * 119.89997 * 0.27768 * 13 12 11 15 15 C 1.41087 * 120.10620 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00457 * 204.64610 * 15 14 13 17 17 C 1.40236 * 119.99852 * 24.63965 * 15 14 13 18 18 N 1.30650 * 119.99849 * 17.89294 * 17 15 14 19 19 Si 1.86798 * 120.00276 * 197.88969 * 17 15 14 20 20 H 1.48506 * 109.46973 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47295 * 120.00163 * 19 17 15 22 22 H 1.48496 * 109.47294 * 240.00225 * 19 17 15 23 23 C 1.40899 * 119.79372 * 0.02562 * 14 13 12 24 24 C 1.36306 * 119.89546 * 359.97438 * 23 14 13 25 25 H 1.09000 * 109.46952 * 269.97831 * 1 2 3 26 26 H 1.09001 * 109.47167 * 29.97496 * 1 2 3 27 27 H 1.09002 * 109.47091 * 149.98169 * 1 2 3 28 28 H 1.08000 * 120.75142 * 0.05004 * 3 2 1 29 29 H 1.08000 * 120.34101 * 179.97438 * 4 3 2 30 30 H 1.08001 * 119.57186 * 179.97438 * 5 4 3 31 31 H 0.96996 * 120.00172 * 179.72583 * 8 7 6 32 32 H 1.07997 * 119.94868 * 359.97438 * 12 11 9 33 33 H 1.08002 * 120.04814 * 180.30186 * 13 12 11 34 34 H 0.96997 * 119.99803 * 180.02562 * 18 17 15 35 35 H 1.07997 * 120.05233 * 180.02562 * 23 14 13 36 36 H 1.07998 * 119.94961 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1931 0.0000 4 6 3.5956 1.1458 -0.0005 5 6 4.2304 -0.0808 -0.0016 6 7 3.5356 -1.2020 0.0035 7 6 2.2116 -1.1985 -0.0015 8 7 1.5183 -2.4066 -0.0020 9 6 2.1953 -3.5720 -0.0031 10 8 3.4112 -3.5689 -0.0031 11 6 1.4607 -4.8520 -0.0030 12 6 2.1662 -6.0618 -0.0047 13 6 1.4920 -7.2463 0.0014 14 6 0.0831 -7.2526 0.0035 15 6 -0.6192 -8.4762 0.0103 16 1 -1.6258 -8.5234 -0.3780 17 6 -0.0100 -9.6314 0.5213 18 7 1.0374 -9.5296 1.2956 19 14 -0.6961 -11.3157 0.0950 20 1 -1.8768 -11.1592 -0.7920 21 1 0.3448 -12.1121 -0.6031 22 1 -1.1016 -12.0148 1.3408 23 6 -0.6224 -6.0330 -0.0013 24 6 0.0603 -4.8532 -0.0074 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6880 2.1395 0.0008 29 1 4.1726 2.0588 -0.0010 30 1 5.3096 -0.1225 -0.0025 31 1 0.5484 -2.4091 -0.0016 32 1 3.2462 -6.0560 -0.0064 33 1 2.0370 -8.1788 0.0051 34 1 1.4589 -10.3286 1.6488 35 1 -1.7024 -6.0329 0.0006 36 1 -0.4796 -3.9179 -0.0107 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334174954.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:28 Heat of formation + Delta-G solvation = 23.772081 kcal Electronic energy + Delta-G solvation = -20515.374456 eV Core-core repulsion = 17350.213907 eV Total energy + Delta-G solvation = -3165.160550 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.59161 -38.71252 -37.10250 -34.65878 -33.93011 -33.34980 -30.87516 -29.97685 -29.42208 -27.24443 -26.01289 -23.71640 -22.12234 -21.73695 -20.87336 -19.70233 -18.11294 -17.53472 -16.74024 -15.71298 -15.46558 -15.18399 -14.95850 -14.26787 -14.07549 -13.95656 -13.61162 -13.25212 -12.93556 -12.82124 -12.69847 -12.61541 -12.25146 -11.93814 -11.61199 -11.44479 -11.27431 -11.02508 -10.71944 -10.40363 -10.10129 -9.63251 -9.53432 -9.50865 -9.37442 -8.56056 -7.96060 -7.75360 -7.60703 -7.06624 -4.64807 1.21132 1.43560 2.21990 2.87786 2.93588 2.98988 2.99134 3.34228 3.70296 3.73919 4.11466 4.56155 4.58563 4.77260 4.96338 5.02238 5.23168 5.43063 5.47242 5.52385 5.63237 5.84233 5.87892 5.93983 6.13139 6.24294 6.25619 6.52775 6.75838 6.79580 6.95411 7.02497 7.09592 7.38379 7.53592 7.58164 7.80496 7.92515 8.01728 8.37495 8.41114 8.58054 8.70343 9.01030 9.85033 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.042921 B = 0.003356 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.202519 B = 8341.909024 C = 8908.356269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.189 4.189 3 C -0.051 4.051 4 C -0.219 4.219 5 C 0.127 3.873 6 N -0.473 5.473 7 C 0.377 3.623 8 N -0.665 5.665 9 C 0.558 3.442 10 O -0.503 6.503 11 C -0.285 4.285 12 C -0.033 4.033 13 C -0.182 4.182 14 C 0.128 3.872 15 C -0.440 4.440 16 H 0.086 0.914 17 C 0.073 3.927 18 N -0.766 5.766 19 Si 0.914 3.086 20 H -0.257 1.257 21 H -0.268 1.268 22 H -0.271 1.271 23 C -0.233 4.233 24 C -0.051 4.051 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.154 0.846 31 H 0.412 0.588 32 H 0.102 0.898 33 H 0.122 0.878 34 H 0.288 0.712 35 H 0.098 0.902 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.781 13.441 -1.561 13.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.195 4.195 3 C -0.077 4.077 4 C -0.241 4.241 5 C -0.032 4.032 6 N -0.187 5.187 7 C 0.144 3.856 8 N -0.312 5.312 9 C 0.352 3.648 10 O -0.377 6.377 11 C -0.290 4.290 12 C -0.052 4.052 13 C -0.201 4.201 14 C 0.125 3.875 15 C -0.467 4.467 16 H 0.104 0.896 17 C -0.149 4.149 18 N -0.389 5.389 19 Si 0.737 3.263 20 H -0.180 1.180 21 H -0.193 1.193 22 H -0.196 1.196 23 C -0.252 4.252 24 C -0.070 4.070 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.150 0.850 29 H 0.147 0.853 30 H 0.171 0.829 31 H 0.251 0.749 32 H 0.120 0.880 33 H 0.139 0.861 34 H 0.099 0.901 35 H 0.117 0.883 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.340 12.332 -1.400 12.416 hybrid contribution -1.172 0.132 -0.021 1.180 sum -1.512 12.464 -1.421 12.636 Atomic orbital electron populations 1.20647 0.90396 1.02876 1.02515 1.20286 0.97148 0.92524 1.09498 1.21168 0.93989 0.97084 0.95422 1.21943 0.95119 0.99392 1.07614 1.22684 1.00144 0.86982 0.93386 1.67820 1.05631 1.30461 1.14821 1.18488 0.88808 0.85557 0.92730 1.43954 1.10532 1.03771 1.72953 1.18870 0.87483 0.83128 0.75293 1.90757 1.13345 1.86653 1.46970 1.18837 0.92872 0.91039 1.26229 1.20473 0.98233 0.91458 0.95059 1.21015 0.94379 0.96688 1.08024 1.17797 0.92225 0.92184 0.85312 1.19891 1.01259 0.92350 1.33191 0.89603 1.26136 0.94106 1.02191 0.92484 1.69754 1.16716 1.32568 1.19817 0.86157 0.80260 0.80312 0.79549 1.18042 1.19307 1.19627 1.20658 0.97978 0.92342 1.14246 1.20340 0.92675 0.96457 0.97507 0.90964 0.91053 0.91732 0.85042 0.85250 0.82887 0.74898 0.88006 0.86051 0.90096 0.88346 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 9.59 36.01 0.35 -0.69 16 2 C -0.19 -2.46 5.92 -104.27 -0.62 -3.08 16 3 C -0.05 -0.56 9.85 -39.31 -0.39 -0.95 16 4 C -0.22 -2.48 10.11 -39.42 -0.40 -2.88 16 5 C 0.13 1.81 11.18 -17.57 -0.20 1.62 16 6 N -0.47 -8.88 7.87 -12.38 -0.10 -8.98 16 7 C 0.38 6.48 7.41 -154.78 -1.15 5.33 16 8 N -0.67 -11.92 5.25 -12.37 -0.06 -11.99 16 9 C 0.56 12.36 7.73 -12.45 -0.10 12.26 16 10 O -0.50 -12.64 14.56 5.29 0.08 -12.56 16 11 C -0.29 -6.54 5.89 -104.73 -0.62 -7.15 16 12 C -0.03 -0.81 9.52 -39.60 -0.38 -1.18 16 13 C -0.18 -4.61 8.63 -39.27 -0.34 -4.95 16 14 C 0.13 3.22 5.58 -106.80 -0.60 2.62 16 15 C -0.44 -10.75 9.04 -37.75 -0.34 -11.09 16 16 H 0.09 1.98 7.91 -52.49 -0.42 1.57 16 17 C 0.07 1.69 5.14 -17.30 -0.09 1.60 16 18 N -0.77 -18.52 10.95 55.56 0.61 -17.91 16 19 Si 0.91 17.14 29.60 -169.99 -5.03 12.11 16 20 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 21 H -0.27 -4.99 7.11 56.52 0.40 -4.58 16 22 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 23 C -0.23 -5.27 9.73 -39.27 -0.38 -5.66 16 24 C -0.05 -1.06 9.47 -39.60 -0.38 -1.44 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 27 H 0.06 0.62 6.56 -51.93 -0.34 0.28 16 28 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 29 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.41 6.11 4.68 -40.82 -0.19 5.92 16 32 H 0.10 2.47 7.63 -52.49 -0.40 2.07 16 33 H 0.12 3.15 6.16 -52.49 -0.32 2.82 16 34 H 0.29 6.25 8.29 -40.82 -0.34 5.91 16 35 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 36 H 0.09 1.46 6.37 -52.49 -0.33 1.12 16 LS Contribution 310.39 15.07 4.68 4.68 Total: -1.00 -30.49 310.39 -9.12 -39.61 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -3.67 Total: 10.69 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -5.61 Total: -15.64 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.45 Total: -38.88 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.08 Total: -12.56 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -5.03 Total: 12.11 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.49 -9.12 -39.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334174954.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.378 kcal (2) G-P(sol) polarization free energy of solvation -30.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds