Wall clock time and date at job start Tue Mar 31 2020 05:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38392 * 120.44659 * 2 1 4 4 C 1.38806 * 118.49519 * 180.02562 * 3 2 1 5 5 C 1.38116 * 119.31267 * 0.02562 * 4 3 2 6 6 N 1.31904 * 120.85391 * 359.71858 * 5 4 3 7 7 C 1.32397 * 121.63138 * 0.56968 * 6 5 4 8 8 N 1.39288 * 119.70078 * 179.70783 * 7 6 5 9 9 C 1.34780 * 119.99589 * 359.72577 * 8 7 6 10 10 O 1.21590 * 120.00287 * 0.02562 * 9 8 7 11 11 C 1.47582 * 119.99468 * 179.97438 * 9 8 7 12 12 C 1.40047 * 119.89416 * 179.97438 * 11 9 8 13 13 C 1.36301 * 120.10089 * 179.70482 * 12 11 9 14 14 C 1.40896 * 119.89997 * 0.27768 * 13 12 11 15 15 C 1.41087 * 120.10620 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00457 * 204.64610 * 15 14 13 17 17 C 1.40236 * 119.99852 * 24.63965 * 15 14 13 18 18 N 1.30650 * 119.99849 * 17.89294 * 17 15 14 19 19 Si 1.86798 * 120.00276 * 197.88969 * 17 15 14 20 20 H 1.48506 * 109.46973 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47295 * 120.00163 * 19 17 15 22 22 H 1.48496 * 109.47294 * 240.00225 * 19 17 15 23 23 C 1.40899 * 119.79372 * 0.02562 * 14 13 12 24 24 C 1.36306 * 119.89546 * 359.97438 * 23 14 13 25 25 H 1.09000 * 109.46952 * 269.97831 * 1 2 3 26 26 H 1.09001 * 109.47167 * 29.97496 * 1 2 3 27 27 H 1.09002 * 109.47091 * 149.98169 * 1 2 3 28 28 H 1.08000 * 120.75142 * 0.05004 * 3 2 1 29 29 H 1.08000 * 120.34101 * 179.97438 * 4 3 2 30 30 H 1.08001 * 119.57186 * 179.97438 * 5 4 3 31 31 H 0.96996 * 120.00172 * 179.72583 * 8 7 6 32 32 H 1.07997 * 119.94868 * 359.97438 * 12 11 9 33 33 H 1.08002 * 120.04814 * 180.30186 * 13 12 11 34 34 H 0.96997 * 119.99803 * 180.02562 * 18 17 15 35 35 H 1.07997 * 120.05233 * 180.02562 * 23 14 13 36 36 H 1.07998 * 119.94961 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1931 0.0000 4 6 3.5956 1.1458 -0.0005 5 6 4.2304 -0.0808 -0.0016 6 7 3.5356 -1.2020 0.0035 7 6 2.2116 -1.1985 -0.0015 8 7 1.5183 -2.4066 -0.0020 9 6 2.1953 -3.5720 -0.0031 10 8 3.4112 -3.5689 -0.0031 11 6 1.4607 -4.8520 -0.0030 12 6 2.1662 -6.0618 -0.0047 13 6 1.4920 -7.2463 0.0014 14 6 0.0831 -7.2526 0.0035 15 6 -0.6192 -8.4762 0.0103 16 1 -1.6258 -8.5234 -0.3780 17 6 -0.0100 -9.6314 0.5213 18 7 1.0374 -9.5296 1.2956 19 14 -0.6961 -11.3157 0.0950 20 1 -1.8768 -11.1592 -0.7920 21 1 0.3448 -12.1121 -0.6031 22 1 -1.1016 -12.0148 1.3408 23 6 -0.6224 -6.0330 -0.0013 24 6 0.0603 -4.8532 -0.0074 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6880 2.1395 0.0008 29 1 4.1726 2.0588 -0.0010 30 1 5.3096 -0.1225 -0.0025 31 1 0.5484 -2.4091 -0.0016 32 1 3.2462 -6.0560 -0.0064 33 1 2.0370 -8.1788 0.0051 34 1 1.4589 -10.3286 1.6488 35 1 -1.7024 -6.0329 0.0006 36 1 -0.4796 -3.9179 -0.0107 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334174954.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:27 Heat of formation + Delta-G solvation = 6.793220 kcal Electronic energy + Delta-G solvation = -20516.110715 eV Core-core repulsion = 17350.213907 eV Total energy + Delta-G solvation = -3165.896808 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.83187 -40.24339 -38.83389 -36.05849 -35.69623 -34.39049 -32.33632 -31.67319 -31.01081 -28.29212 -27.62969 -25.06682 -23.51207 -23.05799 -22.55201 -21.27050 -19.55730 -19.22460 -18.21595 -17.20385 -16.78424 -16.31126 -16.28726 -15.81215 -15.76449 -15.19005 -14.92271 -14.90008 -14.49547 -14.03906 -13.83704 -13.71040 -13.58363 -13.40261 -13.21867 -12.84643 -12.67416 -12.46145 -12.37763 -11.78750 -11.75652 -11.40315 -11.14372 -11.05610 -10.53038 -9.91845 -9.60891 -9.51469 -9.06964 -8.81526 -6.50705 0.06850 0.39535 0.58495 1.12889 1.37695 1.42279 1.55597 2.03076 2.09639 2.16107 2.72560 3.02300 3.53743 3.67049 3.86377 4.01695 4.15180 4.20596 4.31089 4.35247 4.40762 4.64140 4.79569 4.84842 4.94849 4.99137 5.13383 5.18787 5.21015 5.22077 5.31613 5.43561 5.55810 5.74147 5.85078 5.97545 5.98527 6.16407 6.37135 6.53296 6.73721 6.86156 7.15773 7.48353 8.13399 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.042921 B = 0.003356 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.202519 B = 8341.909024 C = 8908.356269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.177 4.177 3 C -0.050 4.050 4 C -0.195 4.195 5 C 0.096 3.904 6 N -0.529 5.529 7 C 0.330 3.670 8 N -0.654 5.654 9 C 0.559 3.441 10 O -0.546 6.546 11 C -0.296 4.296 12 C -0.048 4.048 13 C -0.202 4.202 14 C 0.101 3.899 15 C -0.466 4.466 16 H 0.095 0.905 17 C 0.032 3.968 18 N -0.801 5.801 19 Si 0.990 3.010 20 H -0.250 1.250 21 H -0.266 1.266 22 H -0.263 1.263 23 C -0.242 4.242 24 C -0.038 4.038 25 H 0.084 0.916 26 H 0.099 0.901 27 H 0.063 0.937 28 H 0.177 0.823 29 H 0.169 0.831 30 H 0.165 0.835 31 H 0.425 0.575 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.296 0.704 35 H 0.121 0.879 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.032 16.033 -1.793 16.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.182 4.182 3 C -0.075 4.075 4 C -0.216 4.216 5 C -0.061 4.061 6 N -0.244 5.244 7 C 0.099 3.901 8 N -0.302 5.302 9 C 0.352 3.648 10 O -0.423 6.423 11 C -0.301 4.301 12 C -0.067 4.067 13 C -0.221 4.221 14 C 0.098 3.902 15 C -0.493 4.493 16 H 0.114 0.886 17 C -0.187 4.187 18 N -0.424 5.424 19 Si 0.810 3.190 20 H -0.173 1.173 21 H -0.191 1.191 22 H -0.188 1.188 23 C -0.261 4.261 24 C -0.057 4.057 25 H 0.103 0.897 26 H 0.118 0.882 27 H 0.082 0.918 28 H 0.194 0.806 29 H 0.187 0.813 30 H 0.182 0.818 31 H 0.266 0.734 32 H 0.107 0.893 33 H 0.123 0.877 34 H 0.107 0.893 35 H 0.139 0.861 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.610 14.995 -1.629 15.307 hybrid contribution -0.396 -0.432 0.070 0.590 sum -3.006 14.563 -1.560 14.952 Atomic orbital electron populations 1.20783 0.87846 1.04282 1.03702 1.20692 0.98989 0.91475 1.07076 1.21751 0.93985 0.98070 0.93741 1.22385 0.95832 0.99458 1.03879 1.23045 1.00897 0.87395 0.94764 1.67601 1.07236 1.33312 1.16211 1.18794 0.88976 0.86194 0.96135 1.43543 1.10946 1.03160 1.72598 1.18746 0.86963 0.84118 0.74930 1.90723 1.14998 1.87486 1.49116 1.19080 0.94080 0.91001 1.25945 1.20518 0.97849 0.92464 0.95916 1.20929 0.95057 0.96198 1.09945 1.18164 0.92168 0.93860 0.86014 1.20218 1.01966 0.93054 1.34036 0.88649 1.27068 0.94090 1.05888 0.91623 1.69810 1.17918 1.34140 1.20575 0.85026 0.79556 0.74988 0.79461 1.17262 1.19087 1.18760 1.20951 0.99157 0.91975 1.14030 1.20689 0.91773 0.98038 0.95160 0.89732 0.88196 0.91827 0.80570 0.81304 0.81810 0.73387 0.89291 0.87748 0.89293 0.86078 0.84791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 9.59 71.24 0.68 -0.99 16 2 C -0.18 -4.10 5.92 -19.64 -0.12 -4.22 16 3 C -0.05 -0.88 9.85 22.44 0.22 -0.66 16 4 C -0.19 -3.73 10.11 22.38 0.23 -3.51 16 5 C 0.10 2.69 11.18 84.65 0.95 3.64 16 6 N -0.53 -20.21 7.87 -193.09 -1.52 -21.73 16 7 C 0.33 11.17 7.41 132.94 0.99 12.15 16 8 N -0.65 -23.28 5.25 -311.30 -1.63 -24.92 16 9 C 0.56 25.53 7.73 86.71 0.67 26.20 16 10 O -0.55 -28.94 14.56 -4.00 -0.06 -29.00 16 11 C -0.30 -13.96 5.89 -19.94 -0.12 -14.08 16 12 C -0.05 -2.50 9.52 22.26 0.21 -2.29 16 13 C -0.20 -10.83 8.63 22.47 0.19 -10.64 16 14 C 0.10 5.22 5.58 -21.28 -0.12 5.10 16 15 C -0.47 -23.12 9.04 23.45 0.21 -22.91 16 16 H 0.10 4.39 7.91 -2.91 -0.02 4.37 16 17 C 0.03 1.52 5.14 85.35 0.44 1.95 16 18 N -0.80 -40.03 10.95 21.87 0.24 -39.79 16 19 Si 0.99 35.03 29.60 68.60 2.03 37.06 16 20 H -0.25 -8.45 7.11 99.48 0.71 -7.75 16 21 H -0.27 -9.25 7.11 99.48 0.71 -8.54 16 22 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 23 C -0.24 -10.86 9.73 22.47 0.22 -10.64 16 24 C -0.04 -1.56 9.47 22.26 0.21 -1.35 16 25 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.10 0.99 8.10 -2.39 -0.02 0.97 16 27 H 0.06 1.00 6.56 -2.39 -0.02 0.98 16 28 H 0.18 1.58 8.06 -2.91 -0.02 1.56 16 29 H 0.17 1.88 8.06 -2.91 -0.02 1.85 16 30 H 0.16 3.86 8.06 -2.91 -0.02 3.83 16 31 H 0.42 11.92 4.68 -92.71 -0.43 11.49 16 32 H 0.09 4.71 7.63 -2.91 -0.02 4.69 16 33 H 0.10 5.82 6.16 -2.91 -0.02 5.80 16 34 H 0.30 13.23 8.29 -92.71 -0.77 12.46 16 35 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 36 H 0.13 4.12 6.37 -2.91 -0.02 4.10 16 Total: -1.00 -71.72 310.39 4.61 -67.11 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: 0.69 Total: 33.52 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: 4.86 Total: -22.25 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -2.91 Total: -86.44 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -0.06 Total: -29.00 kcal Atomic # 14 Polarization: 35.03 SS G_CDS: 2.03 Total: 37.06 kcal Total: -71.72 4.61 -67.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334174954.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.904 kcal (2) G-P(sol) polarization free energy of solvation -71.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds