Wall clock time and date at job start Tue Mar 31 2020 05:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38838 * 120.75313 * 2 1 4 4 C 1.38075 * 119.31880 * 180.02562 * 3 2 1 5 5 N 1.31935 * 120.84913 * 359.72412 * 4 3 2 6 6 C 1.32367 * 121.63413 * 0.55976 * 5 4 3 7 7 N 1.39287 * 119.70314 * 179.70914 * 6 5 4 8 8 C 1.34776 * 119.99689 * 5.37455 * 7 6 5 9 9 O 1.21594 * 120.00018 * 354.01852 * 8 7 6 10 10 C 1.47580 * 119.99681 * 174.01338 * 8 7 6 11 11 C 1.40042 * 119.89575 * 180.02562 * 10 8 7 12 12 C 1.36311 * 120.10416 * 180.23307 * 11 10 8 13 13 C 1.40893 * 119.89302 * 359.52525 * 12 11 10 14 14 C 1.41085 * 120.10237 * 180.20719 * 13 12 11 15 15 H 1.07998 * 120.00471 * 200.65025 * 14 13 12 16 16 C 1.40235 * 120.00124 * 20.64018 * 14 13 12 17 17 N 1.30648 * 119.99628 * 34.40768 * 16 14 13 18 18 Si 1.86793 * 120.00413 * 214.40661 * 16 14 13 19 19 H 1.48504 * 109.47348 * 94.99191 * 18 16 14 20 20 H 1.48508 * 109.47403 * 214.99290 * 18 16 14 21 21 H 1.48500 * 109.47232 * 334.99036 * 18 16 14 22 22 C 1.40904 * 119.79681 * 0.46968 * 13 12 11 23 23 C 1.36295 * 119.89295 * 359.76259 * 22 13 12 24 24 C 1.38344 * 120.74790 * 180.02562 * 2 1 3 25 25 H 1.09006 * 109.47213 * 269.97929 * 1 2 3 26 26 H 1.09001 * 109.46885 * 29.97813 * 1 2 3 27 27 H 1.08995 * 109.47351 * 149.97666 * 1 2 3 28 28 H 1.08003 * 120.34182 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.57914 * 179.97438 * 4 3 2 30 30 H 0.96993 * 120.00008 * 185.37057 * 7 6 5 31 31 H 1.08004 * 119.94971 * 359.95494 * 11 10 8 32 32 H 1.08001 * 120.05169 * 179.74174 * 12 11 10 33 33 H 0.97000 * 119.99942 * 179.97438 * 17 16 14 34 34 H 1.08004 * 120.05249 * 179.73116 * 22 13 12 35 35 H 1.08004 * 119.95012 * 179.97438 * 23 22 13 36 36 H 1.08006 * 120.45192 * 359.95344 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1931 0.0000 4 6 3.5973 1.1586 -0.0005 5 7 4.2452 0.0093 0.0044 6 6 3.6045 -1.1489 -0.0010 7 7 4.3291 -2.3385 -0.0016 8 6 5.6717 -2.3097 0.1126 9 8 6.2597 -1.2454 0.1067 10 6 6.4282 -3.5700 0.2450 11 6 7.8231 -3.5375 0.3641 12 6 8.5265 -4.6992 0.4818 13 6 7.8469 -5.9334 0.4936 14 6 8.5701 -7.1382 0.6197 15 1 8.1260 -8.0703 0.3029 16 6 9.8657 -7.1255 1.1561 17 7 10.1728 -6.2780 2.1018 18 14 11.1524 -8.3202 0.5187 19 1 11.9640 -7.6584 -0.5342 20 1 12.0369 -8.7379 1.6361 21 1 10.4793 -9.5143 -0.0526 22 6 6.4432 -5.9610 0.3736 23 6 5.7489 -4.7945 0.2516 24 6 2.2143 -1.1890 -0.0005 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8897 -0.5142 28 1 1.6949 2.1386 -0.0004 29 1 4.1537 2.0842 -0.0010 30 1 3.8675 -3.1875 -0.0841 31 1 8.3430 -2.5908 0.3581 32 1 9.6026 -4.6735 0.5694 33 1 11.0689 -6.2694 2.4732 34 1 5.9185 -6.9050 0.3778 35 1 4.6730 -4.8146 0.1591 36 1 1.6940 -2.1354 -0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334329947.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:54 Heat of formation + Delta-G solvation = 19.749427 kcal Electronic energy + Delta-G solvation = -20241.764767 eV Core-core repulsion = 17076.429782 eV Total energy + Delta-G solvation = -3165.334985 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.47420 -38.73918 -37.10778 -34.54900 -34.02461 -33.57921 -30.60834 -29.84285 -29.22273 -27.86401 -26.03709 -23.25707 -22.94487 -21.54743 -20.69772 -19.52590 -17.80109 -17.54619 -16.55466 -15.93027 -15.64631 -15.28381 -14.83884 -14.46721 -14.08653 -13.92141 -13.75718 -13.32239 -12.82015 -12.78082 -12.69982 -12.60110 -12.23494 -12.08812 -11.72274 -11.43735 -11.29607 -11.02369 -10.74042 -10.32846 -10.17099 -9.60479 -9.53684 -9.41832 -9.24741 -8.54716 -8.03315 -7.75425 -7.72637 -7.23394 -4.62560 1.25972 1.41288 2.24564 2.85372 2.93313 2.95638 3.00105 3.36135 3.67476 3.71779 4.09011 4.48413 4.57258 4.72477 5.01391 5.14596 5.18873 5.36497 5.47409 5.50523 5.62221 5.80708 5.86663 5.90480 6.08160 6.24861 6.33014 6.55253 6.70317 6.77699 6.92307 7.04543 7.09816 7.36810 7.54666 7.59526 7.78243 7.93675 7.97703 8.32808 8.43411 8.54554 8.70054 9.04374 9.69173 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.047575 B = 0.003096 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.409034 B = 9040.494826 C = 9488.160322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.018 4.018 3 C -0.224 4.224 4 C 0.136 3.864 5 N -0.480 5.480 6 C 0.380 3.620 7 N -0.667 5.667 8 C 0.559 3.441 9 O -0.506 6.506 10 C -0.296 4.296 11 C -0.024 4.024 12 C -0.199 4.199 13 C 0.129 3.871 14 C -0.443 4.443 15 H 0.090 0.910 16 C 0.085 3.915 17 N -0.741 5.741 18 Si 0.905 3.095 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.256 1.256 22 C -0.238 4.238 23 C -0.044 4.044 24 C -0.223 4.223 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.129 0.871 29 H 0.154 0.846 30 H 0.412 0.588 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.291 0.709 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.595 5.801 -2.611 14.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.026 4.026 3 C -0.246 4.246 4 C -0.023 4.023 5 N -0.195 5.195 6 C 0.148 3.852 7 N -0.312 5.312 8 C 0.354 3.646 9 O -0.380 6.380 10 C -0.301 4.301 11 C -0.044 4.044 12 C -0.218 4.218 13 C 0.126 3.874 14 C -0.469 4.469 15 H 0.108 0.892 16 C -0.141 4.141 17 N -0.361 5.361 18 Si 0.727 3.273 19 H -0.186 1.186 20 H -0.199 1.199 21 H -0.179 1.179 22 C -0.257 4.257 23 C -0.063 4.063 24 C -0.247 4.247 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.147 0.853 29 H 0.171 0.829 30 H 0.250 0.750 31 H 0.119 0.881 32 H 0.126 0.874 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.974 6.533 -2.391 12.993 hybrid contribution -0.564 -0.957 -0.137 1.119 sum -11.537 5.575 -2.528 13.061 Atomic orbital electron populations 1.20794 0.90447 1.03058 1.02697 1.19999 0.96262 0.92432 0.93952 1.21832 0.95620 0.98255 1.08884 1.22676 0.91344 0.95657 0.92615 1.67810 1.39418 0.96846 1.15451 1.18640 0.87729 0.87029 0.91786 1.43875 1.08469 1.06363 1.72522 1.18843 0.80053 0.90398 0.75318 1.90753 1.67730 1.31887 1.47622 1.18742 0.93996 0.90186 1.27164 1.20395 0.92161 0.97424 0.94394 1.20739 0.98933 0.91733 1.10391 1.17703 0.91063 0.92949 0.85721 1.19851 0.97948 0.95348 1.33732 0.89231 1.26168 0.99854 0.95949 0.92169 1.69842 1.21895 1.30251 1.14098 0.86345 0.79894 0.81101 0.79953 1.18643 1.19904 1.17946 1.20575 0.94113 0.96087 1.14945 1.20340 0.96483 0.92669 0.96842 1.21325 0.92698 0.99328 1.11355 0.90656 0.91147 0.91184 0.85333 0.82864 0.75001 0.88115 0.87422 0.89741 0.88425 0.89423 0.85053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.06 36.01 0.36 -0.50 16 2 C -0.02 -0.21 5.91 -104.36 -0.62 -0.83 16 3 C -0.22 -2.60 9.81 -39.42 -0.39 -2.99 16 4 C 0.14 1.96 11.17 -17.57 -0.20 1.76 16 5 N -0.48 -9.03 7.89 -12.38 -0.10 -9.13 16 6 C 0.38 6.55 7.42 -154.79 -1.15 5.40 16 7 N -0.67 -11.94 5.32 -12.36 -0.07 -12.00 16 8 C 0.56 12.42 7.72 -12.45 -0.10 12.33 16 9 O -0.51 -12.75 14.59 5.28 0.08 -12.67 16 10 C -0.30 -6.82 5.89 -104.74 -0.62 -7.44 16 11 C -0.02 -0.60 9.52 -39.60 -0.38 -0.98 16 12 C -0.20 -5.04 8.76 -39.27 -0.34 -5.38 16 13 C 0.13 3.23 5.59 -106.80 -0.60 2.64 16 14 C -0.44 -10.79 8.94 -37.75 -0.34 -11.13 16 15 H 0.09 2.07 8.03 -52.49 -0.42 1.65 16 16 C 0.09 1.95 4.73 -17.31 -0.08 1.87 16 17 N -0.74 -17.68 11.83 55.56 0.66 -17.03 16 18 Si 0.90 16.86 29.67 -169.99 -5.04 11.81 16 19 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 20 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 21 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 22 C -0.24 -5.42 9.73 -39.27 -0.38 -5.80 16 23 C -0.04 -0.93 9.47 -39.61 -0.37 -1.31 16 24 C -0.22 -2.94 9.64 -39.23 -0.38 -3.32 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.45 8.10 -51.93 -0.42 0.02 16 27 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 28 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 29 H 0.15 1.81 8.06 -52.49 -0.42 1.38 16 30 H 0.41 6.00 6.72 -40.82 -0.27 5.73 16 31 H 0.10 2.45 7.63 -52.48 -0.40 2.05 16 32 H 0.11 2.76 6.49 -52.49 -0.34 2.42 16 33 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 34 H 0.10 2.03 8.06 -52.48 -0.42 1.61 16 35 H 0.09 1.48 6.39 -52.48 -0.34 1.14 16 36 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 315.11 15.07 4.75 4.75 Total: -1.00 -30.54 315.11 -9.16 -39.70 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -3.86 Total: 10.26 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -5.57 Total: -15.68 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.49 Total: -38.16 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.08 Total: -12.67 kcal Atomic # 14 Polarization: 16.86 SS G_CDS: -5.04 Total: 11.81 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.54 -9.16 -39.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334329947.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.445 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds