Wall clock time and date at job start Tue Mar 31 2020 05:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38385 * 120.85542 * 2 1 4 4 C 1.38314 * 119.30971 * 180.02562 * 3 2 1 5 5 N 1.31953 * 121.08709 * 0.02562 * 4 3 2 6 6 C 1.31664 * 121.88201 * 359.97438 * 5 4 3 7 7 C 1.39587 * 120.56301 * 0.25838 * 6 5 4 8 8 C 1.47789 * 120.56808 * 179.72414 * 7 6 5 9 9 O 1.21558 * 120.00182 * 186.76296 * 8 7 6 10 10 N 1.34777 * 119.99666 * 6.75711 * 8 7 6 11 11 C 1.39128 * 120.00023 * 185.05994 * 10 8 7 12 12 C 1.39506 * 119.83702 * 214.80151 * 11 10 8 13 13 C 1.36359 * 120.16608 * 179.72010 * 12 11 10 14 14 C 1.40885 * 119.82992 * 0.57149 * 13 12 11 15 15 C 1.41136 * 120.15943 * 179.68220 * 14 13 12 16 16 H 1.07996 * 119.99482 * 209.93193 * 15 14 13 17 17 C 1.39908 * 120.00259 * 29.92814 * 15 14 13 18 18 N 1.30865 * 120.00231 * 9.44195 * 17 15 14 19 19 Si 1.86802 * 120.00066 * 189.43564 * 17 15 14 20 20 H 1.48506 * 109.46975 * 60.00266 * 19 17 15 21 21 H 1.48492 * 109.47213 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47240 * 300.00627 * 19 17 15 23 23 C 1.40881 * 119.67615 * 359.70279 * 14 13 12 24 24 C 1.36356 * 119.83065 * 359.97438 * 23 14 13 25 25 H 1.08995 * 109.47226 * 96.01840 * 1 2 3 26 26 H 1.09002 * 109.46528 * 216.01498 * 1 2 3 27 27 H 1.08997 * 109.47461 * 336.01371 * 1 2 3 28 28 H 1.08005 * 120.34492 * 0.03026 * 3 2 1 29 29 H 1.08000 * 119.46004 * 180.02562 * 4 3 2 30 30 H 1.08002 * 119.71851 * 179.97438 * 6 5 4 31 31 H 0.97000 * 120.00103 * 5.06405 * 10 8 7 32 32 H 1.07996 * 119.91665 * 359.97438 * 12 11 10 33 33 H 1.08005 * 120.08561 * 180.25633 * 13 12 11 34 34 H 0.96999 * 120.00252 * 179.97438 * 18 17 15 35 35 H 1.07997 * 120.08234 * 179.97438 * 23 14 13 36 36 H 1.07998 * 119.91966 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1880 0.0000 4 6 3.5994 1.1507 -0.0005 5 7 4.2500 0.0027 -0.0016 6 6 3.6202 -1.1536 -0.0016 7 6 2.2252 -1.2020 -0.0060 8 6 1.5182 -2.4997 -0.0122 9 8 0.3098 -2.5330 -0.1399 10 7 2.2133 -3.6464 0.1237 11 6 1.5631 -4.8714 0.0127 12 6 1.9737 -5.9488 0.7980 13 6 1.3375 -7.1508 0.6988 14 6 0.2708 -7.3064 -0.2084 15 6 -0.3882 -8.5493 -0.3217 16 1 -0.8288 -8.8430 -1.2629 17 6 -0.4706 -9.4008 0.7854 18 7 -0.1044 -8.9748 1.9673 19 14 -1.1035 -11.1459 0.5763 20 1 -0.2301 -11.8785 -0.3756 21 1 -1.0931 -11.8370 1.8906 22 1 -2.4906 -11.1094 0.0476 23 6 -0.1344 -6.2153 -1.0023 24 6 0.5071 -5.0176 -0.8873 25 1 -0.3633 -0.1077 -1.0219 26 1 -0.3632 -0.8313 0.6043 27 1 -0.3634 0.9389 0.4177 28 1 1.6965 2.1344 0.0005 29 1 4.1558 2.0764 -0.0001 30 1 4.1878 -2.0724 -0.0029 31 1 3.1669 -3.6176 0.2990 32 1 2.7948 -5.8295 1.4893 33 1 1.6537 -7.9829 1.3104 34 1 -0.1619 -9.5651 2.7349 35 1 -0.9509 -6.3274 -1.7002 36 1 0.1973 -4.1801 -1.4949 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334403028.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:36 Heat of formation + Delta-G solvation = 20.599429 kcal Electronic energy + Delta-G solvation = -20574.349523 eV Core-core repulsion = 17409.051397 eV Total energy + Delta-G solvation = -3165.298126 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.76617 -39.14532 -37.26226 -34.78144 -33.70547 -33.11188 -31.54078 -29.62961 -28.96372 -27.87687 -25.32965 -24.14967 -22.40892 -21.69056 -20.80032 -19.87594 -17.70974 -17.30334 -16.90496 -16.38728 -15.84546 -15.23761 -15.00703 -14.86944 -14.05422 -13.86688 -13.77148 -13.04702 -12.86167 -12.75888 -12.73877 -12.45380 -12.20355 -11.95296 -11.80605 -11.36040 -11.14008 -11.07810 -10.76364 -10.11263 -9.82668 -9.63930 -9.56195 -9.39118 -9.33588 -9.13655 -8.89979 -7.59305 -6.96545 -6.72393 -4.35498 0.57733 1.05527 2.57152 3.01960 3.05067 3.06674 3.09059 3.28420 3.57660 3.83188 3.92842 4.17421 4.54748 4.59413 4.63885 4.78327 4.99780 5.25724 5.39232 5.51649 5.64888 5.72443 5.74326 6.03897 6.16238 6.29973 6.36407 6.50538 6.71630 6.87741 7.01479 7.14813 7.23647 7.56052 7.66672 7.70654 7.82098 7.99847 8.20262 8.24452 8.55323 8.66578 8.85977 8.94768 10.20363 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.043235 B = 0.003333 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.470429 B = 8398.176442 C = 8730.988478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.016 3.984 3 C -0.185 4.185 4 C 0.115 3.885 5 N -0.494 5.494 6 C 0.134 3.866 7 C -0.182 4.182 8 C 0.543 3.457 9 O -0.520 6.520 10 N -0.641 5.641 11 C -0.005 4.005 12 C -0.114 4.114 13 C -0.146 4.146 14 C 0.107 3.893 15 C -0.458 4.458 16 H 0.077 0.923 17 C 0.072 3.928 18 N -0.801 5.801 19 Si 0.913 3.087 20 H -0.264 1.264 21 H -0.279 1.279 22 H -0.266 1.266 23 C -0.211 4.211 24 C -0.076 4.076 25 H 0.082 0.918 26 H 0.101 0.899 27 H 0.061 0.939 28 H 0.139 0.861 29 H 0.158 0.842 30 H 0.159 0.841 31 H 0.394 0.606 32 H 0.091 0.909 33 H 0.124 0.876 34 H 0.281 0.719 35 H 0.096 0.904 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.648 13.967 -1.449 15.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.008 3.992 3 C -0.205 4.205 4 C -0.041 4.041 5 N -0.203 5.203 6 C -0.025 4.025 7 C -0.187 4.187 8 C 0.331 3.669 9 O -0.398 6.398 10 N -0.284 5.284 11 C -0.097 4.097 12 C -0.134 4.134 13 C -0.166 4.166 14 C 0.104 3.896 15 C -0.488 4.488 16 H 0.096 0.904 17 C -0.145 4.145 18 N -0.427 5.427 19 Si 0.738 3.262 20 H -0.189 1.189 21 H -0.204 1.204 22 H -0.190 1.190 23 C -0.231 4.231 24 C -0.096 4.096 25 H 0.101 0.899 26 H 0.120 0.880 27 H 0.080 0.920 28 H 0.157 0.843 29 H 0.175 0.825 30 H 0.176 0.824 31 H 0.228 0.772 32 H 0.110 0.890 33 H 0.142 0.858 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.706 13.874 -1.300 15.058 hybrid contribution -0.668 -0.682 0.186 0.973 sum 5.038 13.193 -1.114 14.166 Atomic orbital electron populations 1.21098 0.89041 1.03533 1.04258 1.20531 0.97668 0.91301 0.89726 1.22058 0.95549 0.98626 1.04284 1.22913 0.91767 0.96371 0.93017 1.67679 1.40882 0.98305 1.13447 1.23005 0.90562 0.96538 0.92355 1.21043 0.95169 0.94799 1.07712 1.17983 0.87102 0.83198 0.78659 1.90735 1.13310 1.86591 1.49139 1.42898 1.11028 1.04685 1.69797 1.17145 1.03188 0.84488 1.04902 1.20258 1.00864 0.93905 0.98360 1.20957 0.96578 0.96352 1.02669 1.17687 0.89677 0.92080 0.90167 1.19527 1.31317 1.00633 0.97334 0.90449 1.25909 0.93750 1.00211 0.94624 1.69789 1.36596 1.36646 0.99662 0.86291 0.80136 0.81450 0.78370 1.18886 1.20357 1.19035 1.20705 1.02874 0.92936 1.06585 1.20226 0.95836 0.96878 0.96658 0.89940 0.88023 0.92031 0.84278 0.82452 0.82398 0.77156 0.89038 0.85833 0.90852 0.88584 0.88114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 8.83 36.01 0.32 -1.20 16 2 C 0.02 0.21 5.95 -103.90 -0.62 -0.41 16 3 C -0.19 -1.83 9.78 -39.50 -0.39 -2.22 16 4 C 0.12 1.15 11.17 -17.47 -0.20 0.95 16 5 N -0.49 -6.03 10.35 -12.90 -0.13 -6.16 16 6 C 0.13 1.66 10.68 -17.12 -0.18 1.48 16 7 C -0.18 -2.58 5.89 -104.82 -0.62 -3.19 16 8 C 0.54 9.55 7.43 -12.35 -0.09 9.45 16 9 O -0.52 -10.71 11.29 5.31 0.06 -10.65 16 10 N -0.64 -11.23 5.24 -10.61 -0.06 -11.28 16 11 C -0.01 -0.11 6.26 -83.60 -0.52 -0.63 16 12 C -0.11 -2.56 9.90 -39.79 -0.39 -2.95 16 13 C -0.15 -3.69 8.59 -39.26 -0.34 -4.02 16 14 C 0.11 2.82 5.54 -106.80 -0.59 2.22 16 15 C -0.46 -12.04 9.04 -37.86 -0.34 -12.38 16 16 H 0.08 1.95 7.86 -52.49 -0.41 1.53 16 17 C 0.07 1.79 5.27 -17.34 -0.09 1.69 16 18 N -0.80 -20.56 10.84 55.55 0.60 -19.95 16 19 Si 0.91 18.57 29.57 -169.99 -5.03 13.54 16 20 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 21 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 22 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 23 C -0.21 -5.27 9.74 -39.26 -0.38 -5.65 16 24 C -0.08 -1.79 8.57 -39.78 -0.34 -2.13 16 25 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.10 1.54 5.98 -51.93 -0.31 1.23 16 27 H 0.06 0.58 8.07 -51.93 -0.42 0.16 16 28 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 29 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.16 1.61 6.53 -52.49 -0.34 1.27 16 31 H 0.39 5.43 6.97 -40.82 -0.28 5.15 16 32 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.12 3.21 6.25 -52.48 -0.33 2.88 16 34 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 35 H 0.10 2.28 8.06 -52.49 -0.42 1.85 16 36 H 0.10 2.31 6.51 -52.49 -0.34 1.97 16 LS Contribution 308.09 15.07 4.64 4.64 Total: -1.00 -30.05 308.09 -8.38 -38.43 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -3.69 Total: 10.43 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -4.78 Total: -19.00 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.41 Total: -37.40 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.06 Total: -10.65 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.05 -8.38 -38.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334403028.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.026 kcal (2) G-P(sol) polarization free energy of solvation -30.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds