Wall clock time and date at job start Tue Mar 31 2020 05:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31265 * 1 3 3 Si 1.86801 * 119.99880 * 2 1 4 4 H 1.48498 * 109.47067 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47295 * 300.00319 * 3 2 1 6 6 H 1.48502 * 109.47118 * 60.00437 * 3 2 1 7 7 C 1.39196 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99817 * 186.05042 * 7 2 1 9 9 N 1.36638 * 119.99797 * 5.77360 * 7 2 1 10 10 C 1.34779 * 119.99713 * 204.79400 * 9 7 2 11 11 O 1.21613 * 119.99987 * 354.84177 * 10 9 7 12 12 C 1.47711 * 119.99862 * 174.84929 * 10 9 7 13 13 N 1.32324 * 120.16433 * 285.96471 * 12 10 9 14 14 C 1.32025 * 122.65671 * 179.74580 * 13 12 10 15 15 C 1.36684 * 122.04396 * 0.54369 * 14 13 12 16 16 C 1.40572 * 118.87439 * 359.73856 * 15 14 13 17 17 C 1.40303 * 122.21732 * 179.97438 * 16 15 14 18 18 C 1.36230 * 119.45343 * 180.02562 * 17 16 15 19 19 C 1.39360 * 120.99357 * 0.02562 * 18 17 16 20 20 C 1.36300 * 121.06867 * 359.97438 * 19 18 17 21 21 C 1.40030 * 119.54274 * 359.97438 * 20 19 18 22 22 C 1.46500 * 120.00127 * 24.79609 * 9 7 2 23 23 C 1.53001 * 117.49829 * 131.03240 * 22 9 7 24 24 C 1.52993 * 117.50031 * 62.41009 * 22 9 7 25 25 H 0.97002 * 120.00363 * 4.99749 * 1 2 3 26 26 H 1.08002 * 118.97904 * 180.25967 * 14 13 12 27 27 H 1.08006 * 120.56710 * 179.71471 * 15 14 13 28 28 H 1.07995 * 120.27720 * 0.02562 * 17 16 15 29 29 H 1.07999 * 119.50664 * 179.97438 * 18 17 16 30 30 H 1.07996 * 119.46374 * 179.97438 * 19 18 17 31 31 H 1.08004 * 120.22474 * 180.02562 * 20 19 18 32 32 H 1.09004 * 115.54807 * 276.73861 * 22 9 7 33 33 H 1.09001 * 117.50051 * 359.97438 * 23 22 9 34 34 H 1.09001 * 117.49609 * 145.02250 * 23 22 9 35 35 H 1.09004 * 117.50366 * 214.97901 * 24 22 9 36 36 H 1.09003 * 117.50171 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3127 0.0000 0.0000 3 14 2.2466 1.6178 0.0000 4 1 3.7066 1.3464 -0.0006 5 1 1.8878 2.3965 -1.2124 6 1 1.8879 2.3964 1.2126 7 6 2.0086 -1.2055 -0.0005 8 1 3.0841 -1.2081 0.0980 9 7 1.3306 -2.3857 -0.1201 10 6 1.8690 -3.5238 0.3610 11 8 2.9965 -3.5180 0.8166 12 6 1.0895 -4.7782 0.3346 13 7 0.0935 -4.9602 1.1866 14 6 -0.6381 -6.0591 1.2032 15 6 -0.4086 -7.0961 0.3429 16 6 0.6358 -6.9846 -0.5913 17 6 0.9332 -8.0059 -1.5063 18 6 1.9588 -7.8384 -2.3872 19 6 2.7166 -6.6689 -2.3923 20 6 2.4547 -5.6572 -1.5172 21 6 1.4073 -5.7933 -0.5978 22 6 0.0186 -2.4141 -0.7713 23 6 -0.2120 -3.4745 -1.8498 24 6 -0.0481 -2.0053 -2.2441 25 1 -0.4851 0.8368 -0.0732 26 1 -1.4399 -6.1431 1.9219 27 1 -1.0191 -7.9863 0.3804 28 1 0.3538 -8.9172 -1.5123 29 1 2.1887 -8.6241 -3.0916 30 1 3.5244 -6.5624 -3.1011 31 1 3.0504 -4.7565 -1.5335 32 1 -0.8270 -2.1490 -0.1366 33 1 0.6125 -4.1508 -2.0752 34 1 -1.2096 -3.9074 -1.9247 35 1 -0.9378 -1.4717 -2.5786 36 1 0.8841 -1.7149 -2.7286 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334673282.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:51 Heat of formation + Delta-G solvation = 64.555813 kcal Electronic energy + Delta-G solvation = -22114.347427 eV Core-core repulsion = 18950.955393 eV Total energy + Delta-G solvation = -3163.392034 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.74558 -38.53114 -37.01708 -36.06144 -33.30331 -32.56107 -31.12550 -30.96507 -29.43217 -25.73550 -24.05260 -23.32101 -22.55363 -21.53886 -21.35979 -19.45934 -17.57212 -17.25244 -16.94202 -16.37560 -15.50902 -15.15984 -14.71347 -14.42147 -14.19345 -13.92129 -13.72656 -13.51267 -13.15217 -12.81055 -12.50365 -12.10472 -11.86611 -11.66259 -11.28186 -11.11869 -10.97321 -10.81329 -10.52487 -10.31742 -10.02294 -9.72972 -9.45509 -9.28177 -8.93879 -8.82526 -8.54254 -7.79483 -7.77746 -6.30188 -3.94739 0.52811 1.13791 2.09447 3.12250 3.24112 3.26836 3.31938 3.61210 4.02774 4.32331 4.44898 4.71518 4.72878 4.88543 4.97777 5.02130 5.13061 5.24534 5.32864 5.38926 5.50301 5.71446 5.79237 5.93507 5.96839 5.98351 6.15791 6.24169 6.27190 6.27726 6.52689 6.59149 6.66960 6.85435 6.89510 7.00150 7.30433 7.52611 8.02446 8.32767 8.40988 9.07406 9.31658 9.84654 10.70569 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.024331 B = 0.005910 C = 0.005672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.496859 B = 4736.461211 C = 4935.549610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.042 3.958 3 Si 0.926 3.074 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.314 4.314 8 H 0.103 0.897 9 N -0.395 5.395 10 C 0.498 3.502 11 O -0.573 6.573 12 C 0.192 3.808 13 N -0.464 5.464 14 C 0.088 3.912 15 C -0.171 4.171 16 C -0.022 4.022 17 C -0.121 4.121 18 C -0.098 4.098 19 C -0.131 4.131 20 C -0.069 4.069 21 C -0.089 4.089 22 C 0.140 3.860 23 C -0.229 4.229 24 C -0.155 4.155 25 H 0.268 0.732 26 H 0.152 0.848 27 H 0.134 0.866 28 H 0.128 0.872 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.135 0.865 32 H 0.122 0.878 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.782 -12.296 -5.910 13.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.164 4.164 3 Si 0.752 3.248 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.441 4.441 8 H 0.121 0.879 9 N -0.111 5.111 10 C 0.284 3.716 11 O -0.457 6.457 12 C 0.039 3.961 13 N -0.174 5.174 14 C -0.058 4.058 15 C -0.191 4.191 16 C -0.027 4.027 17 C -0.139 4.139 18 C -0.117 4.117 19 C -0.149 4.149 20 C -0.089 4.089 21 C -0.092 4.092 22 C 0.035 3.965 23 C -0.267 4.267 24 C -0.192 4.192 25 H 0.079 0.921 26 H 0.170 0.830 27 H 0.152 0.848 28 H 0.146 0.854 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.153 0.847 32 H 0.139 0.861 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.678 -11.501 -4.963 12.809 hybrid contribution 0.251 0.120 -0.671 0.726 sum -2.427 -11.381 -5.633 12.929 Atomic orbital electron populations 1.69844 1.05971 1.27738 1.46761 1.25360 0.95467 0.99578 0.95952 0.85867 0.79906 0.81186 0.77799 1.19133 1.20639 1.20587 1.19680 0.92810 0.81707 1.49923 0.87930 1.42891 1.15564 1.05918 1.46771 1.17331 0.87128 0.82778 0.84367 1.90674 1.18767 1.84885 1.51362 1.21912 0.90563 0.94576 0.89086 1.67545 1.04402 1.23291 1.22146 1.22241 0.97554 0.88699 0.97285 1.21906 0.98877 1.00804 0.97524 1.18095 0.95135 0.93511 0.95932 1.20881 0.98746 0.98241 0.96007 1.20925 0.95151 0.97408 0.98208 1.20893 1.00476 0.93776 0.99726 1.21133 0.95205 0.99428 0.93116 1.18824 0.97731 0.94702 0.97896 1.21307 0.88292 0.98174 0.88738 1.23646 1.01883 0.93371 1.07767 1.22806 1.02195 0.94568 0.99673 0.92110 0.83046 0.84810 0.85419 0.85882 0.85699 0.84734 0.86063 0.89411 0.89694 0.89513 0.89365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.64 10.49 55.51 0.58 -22.06 16 2 C 0.04 1.09 5.24 -17.44 -0.09 1.00 16 3 Si 0.93 20.51 29.56 -169.99 -5.03 15.49 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.31 -8.67 9.15 -15.05 -0.14 -8.81 16 8 H 0.10 2.94 7.38 -52.49 -0.39 2.55 16 9 N -0.40 -10.33 2.92 -108.86 -0.32 -10.65 16 10 C 0.50 12.87 5.85 -12.39 -0.07 12.80 16 11 O -0.57 -16.45 16.73 5.27 0.09 -16.36 16 12 C 0.19 4.22 4.14 -82.56 -0.34 3.88 16 13 N -0.46 -9.67 10.24 -9.83 -0.10 -9.77 16 14 C 0.09 1.40 11.06 -18.03 -0.20 1.21 16 15 C -0.17 -2.39 9.88 -39.26 -0.39 -2.78 16 16 C -0.02 -0.34 5.75 -106.83 -0.61 -0.95 16 17 C -0.12 -1.50 9.82 -39.53 -0.39 -1.89 16 18 C -0.10 -1.15 9.95 -39.89 -0.40 -1.55 16 19 C -0.13 -1.78 9.95 -39.86 -0.40 -2.17 16 20 C -0.07 -1.20 8.24 -39.61 -0.33 -1.53 16 21 C -0.09 -1.66 4.33 -106.59 -0.46 -2.12 16 22 C 0.14 3.26 3.61 -67.93 -0.25 3.02 16 23 C -0.23 -4.49 8.68 -26.73 -0.23 -4.72 16 24 C -0.15 -3.21 9.73 -26.74 -0.26 -3.47 16 25 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 26 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 27 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 28 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 29 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.13 2.57 7.18 -52.48 -0.38 2.19 16 32 H 0.12 3.07 7.40 -51.93 -0.38 2.68 16 33 H 0.09 1.73 4.94 -51.93 -0.26 1.47 16 34 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 36 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 LS Contribution 306.59 15.07 4.62 4.62 Total: -1.00 -31.44 306.59 -8.63 -40.07 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -3.92 Total: 6.76 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -4.55 Total: -8.09 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.16 Total: -42.48 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: 0.09 Total: -16.36 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.49 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.44 -8.63 -40.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334673282.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.624 kcal (2) G-P(sol) polarization free energy of solvation -31.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds