Wall clock time and date at job start Tue Mar 31 2020 05:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38381 * 119.92655 * 2 1 4 4 C 1.38341 * 120.29512 * 180.02562 * 3 2 1 5 5 C 1.37969 * 120.14852 * 359.70850 * 4 3 2 6 6 C 1.39578 * 119.84925 * 0.52751 * 5 4 3 7 7 C 1.47801 * 120.14714 * 179.77123 * 6 5 4 8 8 O 1.21560 * 120.00166 * 179.72195 * 7 6 5 9 9 N 1.34774 * 119.99939 * 359.72091 * 7 6 5 10 10 C 1.39389 * 119.99817 * 185.11456 * 9 7 6 11 11 C 1.38623 * 119.57804 * 185.35991 * 10 9 7 12 12 C 1.40807 * 118.79183 * 179.70187 * 11 10 9 13 13 C 1.41543 * 120.99566 * 180.25330 * 12 11 10 14 14 H 1.08000 * 119.99589 * 153.74644 * 13 12 11 15 15 C 1.40022 * 120.00145 * 333.74823 * 13 12 11 16 16 N 1.30741 * 119.99909 * 350.15899 * 15 13 12 17 17 Si 1.86800 * 120.00151 * 170.15663 * 15 13 12 18 18 H 1.48501 * 109.47284 * 89.99833 * 17 15 13 19 19 H 1.48501 * 109.47525 * 210.00178 * 17 15 13 20 20 H 1.48505 * 109.47176 * 330.00059 * 17 15 13 21 21 C 1.41180 * 118.00531 * 0.27993 * 12 11 10 22 22 C 1.37585 * 119.02354 * 359.97438 * 21 12 11 23 23 N 1.32083 * 121.11165 * 0.02827 * 22 21 12 24 24 C 1.37923 * 119.92505 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.46465 * 270.01935 * 1 2 3 26 26 H 1.09000 * 109.46851 * 30.01320 * 1 2 3 27 27 H 1.08991 * 109.47031 * 150.01442 * 1 2 3 28 28 H 1.08004 * 119.85528 * 0.02562 * 3 2 1 29 29 H 1.08006 * 119.92496 * 180.02562 * 4 3 2 30 30 H 1.08003 * 120.07671 * 180.29587 * 5 4 3 31 31 H 0.96995 * 120.00130 * 5.11729 * 9 7 6 32 32 H 1.07993 * 120.60813 * 359.97438 * 11 10 9 33 33 H 0.97007 * 119.99526 * 179.97438 * 16 15 13 34 34 H 1.08010 * 120.48711 * 180.02562 * 21 12 11 35 35 H 1.08001 * 119.44640 * 180.02562 * 22 21 12 36 36 H 1.08001 * 120.07995 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2082 -0.0005 5 6 4.2814 0.0196 0.0050 6 6 3.5913 -1.1936 0.0000 7 6 4.3352 -2.4707 0.0008 8 8 3.7315 -3.5258 0.0015 9 7 5.6830 -2.4655 0.0006 10 6 6.3845 -3.6653 -0.1063 11 6 7.7661 -3.6624 0.0064 12 6 8.4576 -4.8845 -0.0978 13 6 9.8675 -4.9363 0.0154 14 1 10.3491 -5.8416 0.3545 15 6 10.6379 -3.8138 -0.3121 16 7 10.0812 -2.7883 -0.9016 17 14 12.4611 -3.7816 0.0934 18 1 13.2321 -4.3353 -1.0487 19 1 12.8874 -2.3818 0.3462 20 1 12.7133 -4.6023 1.3051 21 6 7.7024 -6.0567 -0.3193 22 6 6.3339 -5.9594 -0.4229 23 7 5.7228 -4.7931 -0.3193 24 6 2.1951 -1.1954 0.0005 25 1 -0.3632 0.0003 1.0277 26 1 -0.3633 0.8899 -0.5140 27 1 -0.3633 -0.8900 -0.5136 28 1 1.6538 2.1326 0.0004 29 1 4.1136 2.1477 -0.0001 30 1 5.3614 0.0280 0.0094 31 1 6.1647 -1.6270 0.0749 32 1 8.3021 -2.7402 0.1756 33 1 10.6148 -2.0105 -1.1282 34 1 8.1918 -7.0157 -0.4053 35 1 5.7495 -6.8518 -0.5919 36 1 1.6552 -2.1307 0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335780507.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:30 Heat of formation + Delta-G solvation = 21.841404 kcal Electronic energy + Delta-G solvation = -20490.862779 eV Core-core repulsion = 17325.618509 eV Total energy + Delta-G solvation = -3165.244270 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.10486 -38.79353 -37.49837 -34.39394 -33.86489 -32.82379 -31.13825 -30.50786 -28.62053 -26.93555 -26.01447 -24.08148 -22.01544 -21.77062 -21.25322 -19.54083 -17.84731 -17.40099 -16.12678 -15.88783 -15.31928 -14.89686 -14.64774 -14.57117 -14.20966 -13.92677 -13.76557 -13.56936 -13.16453 -12.76873 -12.62368 -12.45538 -12.36188 -11.90929 -11.60117 -11.45290 -11.18711 -11.11483 -10.92051 -10.30925 -10.16680 -9.77462 -9.47258 -9.39677 -8.95764 -8.78134 -8.00358 -7.75927 -7.05558 -6.76208 -4.64426 0.90479 1.30247 2.60739 2.78348 3.00496 3.05029 3.18030 3.35248 3.58593 3.84322 4.04421 4.68397 4.68867 4.74090 4.83670 5.08590 5.20178 5.28099 5.44985 5.51977 5.63652 5.66320 5.88516 5.93157 6.01263 6.31329 6.34528 6.44567 6.56593 6.63924 6.78683 6.85260 6.94304 7.11231 7.36407 7.44700 7.76456 7.92942 8.18688 8.40569 8.68289 8.73945 8.85158 9.66243 10.08172 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.024971 B = 0.003872 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.014313 B = 7230.530532 C = 8286.773798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.098 4.098 3 C -0.104 4.104 4 C -0.123 4.123 5 C -0.095 4.095 6 C -0.119 4.119 7 C 0.541 3.459 8 O -0.478 6.478 9 N -0.652 5.652 10 C 0.335 3.665 11 C -0.237 4.237 12 C 0.142 3.858 13 C -0.454 4.454 14 H 0.082 0.918 15 C 0.075 3.925 16 N -0.795 5.795 17 Si 0.915 3.085 18 H -0.269 1.269 19 H -0.276 1.276 20 H -0.260 1.260 21 C -0.281 4.281 22 C 0.118 3.882 23 N -0.553 5.553 24 C -0.064 4.064 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.123 0.877 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.407 0.593 32 H 0.133 0.867 33 H 0.281 0.719 34 H 0.103 0.897 35 H 0.124 0.876 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.449 10.272 1.594 14.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.098 4.098 3 C -0.122 4.122 4 C -0.141 4.141 5 C -0.114 4.114 6 C -0.122 4.122 7 C 0.326 3.674 8 O -0.350 6.350 9 N -0.298 5.298 10 C 0.110 3.890 11 C -0.263 4.263 12 C 0.133 3.867 13 C -0.485 4.485 14 H 0.100 0.900 15 C -0.143 4.143 16 N -0.422 5.422 17 Si 0.739 3.261 18 H -0.194 1.194 19 H -0.201 1.201 20 H -0.184 1.184 21 C -0.305 4.305 22 C -0.037 4.037 23 N -0.272 5.272 24 C -0.083 4.083 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.141 0.859 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.243 0.757 32 H 0.151 0.849 33 H 0.092 0.908 34 H 0.121 0.879 35 H 0.142 0.858 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.809 9.799 1.409 14.657 hybrid contribution 2.196 0.571 0.129 2.273 sum -8.613 10.370 1.537 13.568 Atomic orbital electron populations 1.20785 0.90840 1.02900 1.02427 1.19886 0.96340 0.92842 1.00721 1.21186 0.94300 0.97494 0.99216 1.21067 0.94224 0.97953 1.00899 1.21388 1.00049 0.91860 0.98064 1.20180 0.94460 0.93297 1.04313 1.18338 0.82276 0.88707 0.78058 1.90837 1.67542 1.31743 1.44859 1.43331 1.06038 1.08577 1.71892 1.18182 0.88214 0.85200 0.97396 1.21671 0.90126 1.01184 1.13286 1.17587 0.93371 0.90033 0.85669 1.19576 0.90847 0.98723 1.39366 0.90034 1.25950 1.01507 0.94548 0.92285 1.69742 1.38272 1.05352 1.28802 0.86202 0.81419 0.78456 0.80017 1.19392 1.20055 1.18431 1.21937 0.94745 0.98917 1.14925 1.21760 0.91793 0.93708 0.96397 1.67183 1.39537 0.97252 1.23276 1.21171 0.92711 0.98365 0.96020 0.91103 0.91533 0.91278 0.85875 0.85485 0.85486 0.75666 0.84911 0.90805 0.87898 0.85809 0.84669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 36.01 0.36 -0.58 16 2 C -0.10 -1.11 5.87 -104.68 -0.61 -1.73 16 3 C -0.10 -1.06 9.69 -39.49 -0.38 -1.44 16 4 C -0.12 -1.31 10.03 -39.64 -0.40 -1.71 16 5 C -0.09 -1.22 9.54 -39.18 -0.37 -1.59 16 6 C -0.12 -1.88 5.87 -104.97 -0.62 -2.50 16 7 C 0.54 10.92 7.72 -12.35 -0.10 10.83 16 8 O -0.48 -11.44 14.64 5.31 0.08 -11.36 16 9 N -0.65 -13.36 5.33 -12.36 -0.07 -13.43 16 10 C 0.33 8.29 7.40 -154.76 -1.15 7.14 16 11 C -0.24 -6.06 8.61 -38.47 -0.33 -6.39 16 12 C 0.14 3.74 5.60 -106.55 -0.60 3.14 16 13 C -0.45 -11.64 9.14 -37.65 -0.34 -11.99 16 14 H 0.08 2.00 7.87 -52.49 -0.41 1.59 16 15 C 0.08 1.80 5.31 -17.35 -0.09 1.71 16 16 N -0.80 -19.46 10.70 55.55 0.59 -18.87 16 17 Si 0.91 17.89 29.57 -169.99 -5.03 12.86 16 18 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 19 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 20 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 21 C -0.28 -6.94 9.90 -38.70 -0.38 -7.33 16 22 C 0.12 2.86 11.15 -17.68 -0.20 2.66 16 23 N -0.55 -14.39 7.89 -12.54 -0.10 -14.49 16 24 C -0.06 -0.91 9.24 -39.18 -0.36 -1.27 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 27 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 28 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 29 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 30 H 0.13 1.44 6.42 -52.48 -0.34 1.11 16 31 H 0.41 6.91 6.74 -40.82 -0.28 6.64 16 32 H 0.13 3.35 6.11 -52.49 -0.32 3.03 16 33 H 0.28 6.22 8.29 -40.82 -0.34 5.88 16 34 H 0.10 2.32 8.06 -52.48 -0.42 1.89 16 35 H 0.12 2.62 8.06 -52.49 -0.42 2.20 16 36 H 0.14 1.97 7.65 -52.49 -0.40 1.57 16 LS Contribution 314.16 15.07 4.73 4.73 Total: -1.00 -31.45 314.16 -9.19 -40.64 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -3.83 Total: 10.95 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -5.57 Total: -11.04 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.43 Total: -46.79 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.08 Total: -11.36 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.45 -9.19 -40.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335780507.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.486 kcal (2) G-P(sol) polarization free energy of solvation -31.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds