Wall clock time and date at job start Tue Mar 31 2020 05:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47029 * 344.66507 * 3 2 1 5 5 C 1.36830 * 120.00215 * 274.85508 * 4 3 2 6 6 H 1.07998 * 120.00523 * 188.52689 * 5 4 3 7 7 C 1.39068 * 119.99884 * 8.52339 * 5 4 3 8 8 N 1.31354 * 119.99575 * 14.85619 * 7 5 4 9 9 Si 1.86798 * 120.00163 * 194.85052 * 7 5 4 10 10 H 1.48493 * 109.47236 * 60.00241 * 9 7 5 11 11 H 1.48502 * 109.47307 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47184 * 300.00251 * 9 7 5 13 13 C 1.34781 * 119.99709 * 94.85613 * 4 3 2 14 14 O 1.21620 * 119.99569 * 184.92614 * 13 4 3 15 15 C 1.47540 * 120.00411 * 4.92855 * 13 4 3 16 16 C 1.39828 * 119.96664 * 310.09265 * 15 13 4 17 17 C 1.36656 * 120.15976 * 180.02562 * 16 15 13 18 18 C 1.39514 * 119.95315 * 0.30102 * 17 16 15 19 19 C 1.39878 * 120.18623 * 359.41731 * 18 17 16 20 20 C 1.37453 * 119.91973 * 0.57270 * 19 18 17 21 21 C 1.50581 * 119.37746 * 180.27607 * 19 18 17 22 22 C 1.52753 * 109.80254 * 325.70123 * 21 19 18 23 23 C 1.50327 * 110.70501 * 50.37694 * 22 21 19 24 24 C 1.32663 * 121.08779 * 324.19059 * 23 22 21 25 25 H 1.08988 * 109.46976 * 224.66245 * 3 2 1 26 26 H 1.09006 * 109.46838 * 104.66327 * 3 2 1 27 27 H 0.97005 * 119.99805 * 179.97438 * 8 7 5 28 28 H 1.07995 * 119.91983 * 359.97438 * 16 15 13 29 29 H 1.08001 * 120.02710 * 180.02562 * 17 16 15 30 30 H 1.07995 * 120.14286 * 179.69379 * 20 19 18 31 31 H 1.09005 * 109.41549 * 85.79566 * 21 19 18 32 32 H 1.08993 * 109.41921 * 205.59691 * 21 19 18 33 33 H 1.09001 * 109.22798 * 170.69103 * 22 21 19 34 34 H 1.09000 * 109.23008 * 290.09910 * 22 21 19 35 35 H 1.07995 * 119.45488 * 144.21879 * 23 22 21 36 36 H 1.07993 * 120.25645 * 180.45631 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.3312 0.3653 5 6 3.2306 -1.6732 1.6834 6 1 3.7178 -2.5980 1.9546 7 6 2.7390 -0.8298 2.6739 8 7 1.9018 0.1327 2.3608 9 14 3.2692 -1.0658 4.4494 10 1 4.7432 -0.9162 4.5499 11 1 2.6084 -0.0462 5.3031 12 1 2.8772 -2.4232 4.9069 13 6 3.4151 -2.2195 -0.5971 14 8 3.7350 -3.3536 -0.2960 15 6 3.3753 -1.8163 -2.0158 16 6 2.2446 -1.1720 -2.5273 17 6 2.2034 -0.7973 -3.8408 18 6 3.2890 -1.0634 -4.6756 19 6 4.4256 -1.7023 -4.1691 20 6 4.4686 -2.0796 -2.8480 21 6 5.5895 -1.9751 -5.0848 22 6 5.0798 -2.2870 -6.4906 23 6 4.1071 -1.2363 -6.9485 24 6 3.2658 -0.6640 -6.0972 25 1 2.9710 0.7317 0.7223 26 1 2.9712 0.2610 -0.9943 27 1 1.5586 0.7208 3.0517 28 1 1.4016 -0.9708 -1.8830 29 1 1.3291 -0.2994 -4.2336 30 1 5.3423 -2.5776 -2.4544 31 1 6.2361 -1.0982 -5.1201 32 1 6.1557 -2.8266 -4.7075 33 1 5.9239 -2.3194 -7.1795 34 1 4.5833 -3.2573 -6.4854 35 1 4.0926 -0.9429 -7.9878 36 1 2.5676 0.0841 -6.4422 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335938683.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:34 Heat of formation + Delta-G solvation = 47.346171 kcal Electronic energy + Delta-G solvation = -21287.207029 eV Core-core repulsion = 18123.068729 eV Total energy + Delta-G solvation = -3164.138300 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.08263 -38.59781 -35.88629 -35.68751 -34.29461 -32.33496 -31.96418 -30.01287 -29.02552 -27.48906 -25.31589 -23.67374 -22.87528 -21.72212 -19.69221 -18.28313 -18.01292 -16.78585 -16.25287 -15.88904 -15.50435 -15.00630 -14.58680 -14.30418 -14.06348 -13.82252 -13.37986 -12.97042 -12.94885 -12.76967 -12.52395 -12.17664 -11.89969 -11.83386 -11.60299 -11.54851 -11.23988 -11.19343 -10.63963 -10.57245 -10.48983 -10.45435 -10.40171 -9.77886 -9.33701 -8.74068 -8.58255 -8.21315 -7.83989 -6.56186 -4.05174 0.93155 1.66234 2.41989 3.09627 3.17379 3.20116 3.54519 3.73965 3.99357 4.09362 4.15899 4.61472 4.67868 4.79267 4.86317 4.99768 5.08462 5.19734 5.27870 5.36575 5.39393 5.54370 5.62780 5.64398 5.79912 5.84162 5.99472 6.09483 6.15523 6.31204 6.35597 6.48605 6.65253 6.72527 6.79558 6.92102 7.17697 7.37263 7.77949 8.20973 8.79767 8.91075 9.10361 9.64940 10.45301 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.028831 B = 0.004711 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.953318 B = 5942.464502 C = 6620.072060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C 0.260 3.740 3 C 0.215 3.785 4 N -0.432 5.432 5 C -0.305 4.305 6 H 0.113 0.887 7 C 0.029 3.971 8 N -0.884 5.884 9 Si 0.938 3.062 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.483 3.517 14 O -0.572 6.572 15 C -0.089 4.089 16 C -0.106 4.106 17 C -0.105 4.105 18 C -0.059 4.059 19 C -0.082 4.082 20 C -0.076 4.076 21 C -0.077 4.077 22 C -0.091 4.091 23 C -0.152 4.152 24 C -0.114 4.114 25 H 0.134 0.866 26 H 0.084 0.916 27 H 0.277 0.723 28 H 0.127 0.873 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.597 2.531 -14.379 16.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.163 5.163 2 C -0.058 4.058 3 C 0.088 3.912 4 N -0.150 5.150 5 C -0.432 4.432 6 H 0.131 0.869 7 C -0.173 4.173 8 N -0.524 5.524 9 Si 0.764 3.236 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.197 1.197 13 C 0.273 3.727 14 O -0.456 6.456 15 C -0.092 4.092 16 C -0.125 4.125 17 C -0.123 4.123 18 C -0.060 4.060 19 C -0.083 4.083 20 C -0.095 4.095 21 C -0.114 4.114 22 C -0.128 4.128 23 C -0.170 4.170 24 C -0.132 4.132 25 H 0.152 0.848 26 H 0.102 0.898 27 H 0.088 0.912 28 H 0.144 0.856 29 H 0.142 0.858 30 H 0.147 0.853 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.131 0.869 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.993 2.117 -14.052 15.062 hybrid contribution 0.279 0.133 1.045 1.090 sum 5.272 2.250 -13.008 14.214 Atomic orbital electron populations 1.80904 1.13447 1.08392 1.13510 1.28982 0.95153 0.92521 0.89106 1.19086 0.81923 0.88808 1.01354 1.43580 1.54968 1.10304 1.06147 1.19835 1.35988 1.07894 0.79471 0.86933 1.25337 0.94969 0.95931 1.01078 1.69663 1.28179 1.19576 1.34949 0.85783 0.78959 0.78339 0.80474 1.19549 1.20814 1.19725 1.17919 0.85119 0.85519 0.84187 1.90654 1.53508 1.19003 1.82444 1.20262 0.94954 0.98703 0.95287 1.21261 0.97951 0.97489 0.95837 1.20778 0.97947 1.00495 0.93122 1.18908 0.94138 0.99476 0.93444 1.19809 0.95450 0.98999 0.93992 1.20904 0.97971 0.98545 0.92057 1.20386 0.95416 1.02304 0.93288 1.20412 0.98107 0.98150 0.96089 1.23143 0.96894 0.97994 0.98972 1.21644 0.99501 1.00209 0.91868 0.84813 0.89808 0.91195 0.85574 0.85810 0.85274 0.90529 0.90247 0.90783 0.90684 0.86914 0.86233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.60 18.54 42.15 0.78 -10.82 16 2 C 0.26 5.89 10.61 -20.76 -0.22 5.67 16 3 C 0.22 4.49 4.76 -6.83 -0.03 4.46 16 4 N -0.43 -10.35 2.59 -119.12 -0.31 -10.66 16 5 C -0.30 -7.88 9.46 -15.01 -0.14 -8.02 16 6 H 0.11 3.04 7.26 -52.49 -0.38 2.66 16 7 C 0.03 0.72 5.17 -17.45 -0.09 0.63 16 8 N -0.88 -21.84 8.39 55.50 0.47 -21.37 16 9 Si 0.94 19.64 29.58 -169.99 -5.03 14.61 16 10 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 11 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 12 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 13 C 0.48 11.46 7.16 -12.47 -0.09 11.38 16 14 O -0.57 -15.49 16.65 5.26 0.09 -15.40 16 15 C -0.09 -1.72 4.89 -104.89 -0.51 -2.23 16 16 C -0.11 -1.89 7.50 -39.56 -0.30 -2.19 16 17 C -0.11 -1.57 9.75 -39.68 -0.39 -1.96 16 18 C -0.06 -0.83 5.78 -104.95 -0.61 -1.44 16 19 C -0.08 -1.17 5.67 -104.35 -0.59 -1.77 16 20 C -0.08 -1.27 9.39 -39.24 -0.37 -1.64 16 21 C -0.08 -0.83 5.95 -28.07 -0.17 -1.00 16 22 C -0.09 -0.85 6.05 -28.19 -0.17 -1.02 16 23 C -0.15 -1.48 10.03 -36.38 -0.36 -1.84 16 24 C -0.11 -1.28 9.90 -37.62 -0.37 -1.66 16 25 H 0.13 2.83 6.31 -51.94 -0.33 2.50 16 26 H 0.08 1.48 5.54 -51.93 -0.29 1.19 16 27 H 0.28 6.65 8.31 -40.82 -0.34 6.31 16 28 H 0.13 2.43 4.83 -52.49 -0.25 2.18 16 29 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 30 H 0.13 2.09 8.06 -52.49 -0.42 1.66 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.79 8.06 -51.93 -0.42 0.37 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.11 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 306.10 15.07 4.61 4.61 Total: -1.00 -30.20 306.10 -7.56 -37.76 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -3.76 Total: 3.90 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -4.41 Total: -2.63 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.94 Total: -42.85 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.09 Total: -15.40 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.03 Total: 14.61 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.20 -7.56 -37.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335938683.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.110 kcal (2) G-P(sol) polarization free energy of solvation -30.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds