Wall clock time and date at job start Tue Mar 31 2020 05:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38377 * 120.85476 * 2 1 4 4 C 1.38333 * 119.31231 * 179.97438 * 3 2 1 5 5 N 1.31970 * 121.09887 * 359.97438 * 4 3 2 6 6 C 1.31657 * 121.88796 * 0.02562 * 5 4 3 7 7 C 1.39654 * 120.55016 * 359.74121 * 6 5 4 8 8 C 1.47684 * 120.56551 * 180.26358 * 7 6 5 9 9 O 1.21579 * 119.99732 * 215.91712 * 8 7 6 10 10 N 1.34776 * 120.00203 * 35.92343 * 8 7 6 11 11 C 1.36931 * 119.99934 * 6.03036 * 10 8 7 12 12 H 1.07996 * 119.99970 * 25.27446 * 11 10 8 13 13 C 1.38974 * 120.00191 * 205.27704 * 11 10 8 14 14 N 1.31380 * 119.99964 * 5.29341 * 13 11 10 15 15 Si 1.86799 * 120.00382 * 185.29368 * 13 11 10 16 16 H 1.48497 * 109.47284 * 59.99776 * 15 13 11 17 17 H 1.48493 * 109.47186 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46831 * 299.99907 * 15 13 11 19 19 C 1.39705 * 119.99965 * 186.03759 * 10 8 7 20 20 C 1.38984 * 120.07686 * 244.89277 * 19 10 8 21 21 C 1.38075 * 119.91849 * 179.78842 * 20 19 10 22 22 C 1.38316 * 120.08176 * 0.49157 * 21 20 19 23 23 C 1.38315 * 120.15688 * 359.74208 * 22 21 20 24 24 C 1.38073 * 120.07794 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.47625 * 85.19166 * 1 2 3 26 26 H 1.09003 * 109.47598 * 325.19293 * 1 2 3 27 27 H 1.08995 * 109.47039 * 205.19132 * 1 2 3 28 28 H 1.07997 * 120.34941 * 359.95807 * 3 2 1 29 29 H 1.07993 * 119.45105 * 179.97438 * 4 3 2 30 30 H 1.07997 * 119.72021 * 179.97438 * 6 5 4 31 31 H 0.97001 * 120.00479 * 185.00198 * 14 13 11 32 32 H 1.07999 * 120.04049 * 0.02562 * 20 19 10 33 33 H 1.08007 * 119.96253 * 180.23519 * 21 20 19 34 34 H 1.08002 * 119.91899 * 179.72033 * 22 21 20 35 35 H 1.08001 * 119.95585 * 179.97438 * 23 22 21 36 36 H 1.08004 * 120.03675 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1879 0.0000 4 6 3.5995 1.1507 0.0005 5 7 4.2505 0.0027 0.0016 6 6 3.6211 -1.1537 0.0016 7 6 2.2254 -1.2023 0.0060 8 6 1.5192 -2.4993 0.0119 9 8 0.4777 -2.6271 -0.6022 10 7 2.0290 -3.5412 0.6982 11 6 3.1330 -3.3657 1.4890 12 1 3.3566 -2.3904 1.8954 13 6 3.9658 -4.4425 1.7687 14 7 3.7540 -5.6038 1.1920 15 14 5.3862 -4.2389 2.9647 16 1 4.8603 -3.8374 4.2941 17 1 6.1170 -5.5256 3.0889 18 1 6.3109 -3.1917 2.4612 19 6 1.4313 -4.8003 0.6025 20 6 0.8386 -5.3766 1.7197 21 6 0.2450 -6.6193 1.6204 22 6 0.2485 -7.2949 0.4135 23 6 0.8417 -6.7265 -0.6992 24 6 1.4330 -5.4821 -0.6085 25 1 -0.3634 0.0861 -1.0240 26 1 -0.3634 0.8438 0.5866 27 1 -0.3633 -0.9299 0.4374 28 1 1.6964 2.1343 -0.0007 29 1 4.1556 2.0764 0.0001 30 1 4.1890 -2.0723 0.0020 31 1 4.2889 -6.3738 1.4410 32 1 0.8391 -4.8515 2.6635 33 1 -0.2191 -7.0662 2.4873 34 1 -0.2126 -8.2687 0.3399 35 1 0.8429 -7.2571 -1.6399 36 1 1.8963 -5.0391 -1.4777 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336024151.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:50 Heat of formation + Delta-G solvation = 39.828551 kcal Electronic energy + Delta-G solvation = -21942.688306 eV Core-core repulsion = 18778.224017 eV Total energy + Delta-G solvation = -3164.464289 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.21534 -38.90597 -37.14310 -35.04533 -33.24145 -31.82538 -31.07881 -29.90639 -28.74601 -27.35318 -25.25357 -23.80505 -22.21386 -21.52909 -21.09471 -19.48081 -18.00683 -16.82689 -15.95216 -15.79833 -15.53773 -14.80222 -14.74714 -14.31606 -14.01936 -13.61273 -13.43416 -12.93020 -12.80503 -12.45142 -12.42399 -12.24012 -12.04911 -11.71309 -11.59812 -11.28045 -11.19184 -10.98996 -10.62306 -10.42771 -10.28736 -9.51836 -9.25051 -9.03282 -8.68360 -8.49201 -8.32077 -7.88123 -7.51522 -6.33487 -4.21959 1.34125 1.69956 2.44698 2.47540 3.07454 3.14759 3.16071 3.66474 3.93568 4.30892 4.48259 4.75404 4.94066 5.08826 5.11627 5.25483 5.50321 5.65872 5.77956 5.84011 5.88073 5.97902 6.00312 6.10321 6.24963 6.39375 6.39721 6.51047 6.53467 6.73895 6.89907 7.00828 7.15352 7.23007 7.31187 7.43525 7.52494 7.69812 7.93999 8.30553 8.43347 8.84029 9.18083 9.60775 10.48310 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.015176 B = 0.007981 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.582734 B = 3507.416596 C = 4878.006255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.008 4.008 3 C -0.194 4.194 4 C 0.099 3.901 5 N -0.502 5.502 6 C 0.151 3.849 7 C -0.148 4.148 8 C 0.509 3.491 9 O -0.581 6.581 10 N -0.397 5.397 11 C -0.357 4.357 12 H 0.101 0.899 13 C 0.050 3.950 14 N -0.840 5.840 15 Si 0.918 3.082 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.266 1.266 19 C 0.241 3.759 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.152 4.152 23 C -0.116 4.116 24 C -0.090 4.090 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.129 0.871 29 H 0.149 0.851 30 H 0.181 0.819 31 H 0.276 0.724 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.409 4.750 0.045 5.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.016 4.016 3 C -0.214 4.214 4 C -0.057 4.057 5 N -0.212 5.212 6 C -0.006 4.006 7 C -0.152 4.152 8 C 0.299 3.701 9 O -0.466 6.466 10 N -0.111 5.111 11 C -0.483 4.483 12 H 0.119 0.881 13 C -0.160 4.160 14 N -0.474 5.474 15 Si 0.743 3.257 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.190 1.190 19 C 0.149 3.851 20 C -0.137 4.137 21 C -0.136 4.136 22 C -0.170 4.170 23 C -0.134 4.134 24 C -0.109 4.109 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.103 0.897 28 H 0.147 0.853 29 H 0.166 0.834 30 H 0.198 0.802 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.858 4.489 -0.297 4.867 hybrid contribution 0.098 -0.051 0.810 0.817 sum -1.760 4.438 0.513 4.802 Atomic orbital electron populations 1.20844 0.90080 1.03276 1.02710 1.20383 0.96929 0.91735 0.92589 1.21822 0.95560 0.98063 1.05980 1.22763 0.91613 0.96437 0.94922 1.67789 1.41008 0.98394 1.13988 1.23690 0.91289 0.96384 0.89268 1.20875 0.95375 0.94176 1.04822 1.17879 0.86216 0.84256 0.81731 1.90665 1.24478 1.84310 1.47121 1.41141 1.25369 1.05480 1.39076 1.19615 1.00773 0.98483 1.29472 0.88099 1.25353 0.98149 0.95323 0.97156 1.69823 1.39472 1.00460 1.37645 0.86112 0.80903 0.78176 0.80494 1.19711 1.20577 1.19030 1.17175 0.89844 0.85281 0.92769 1.20855 0.98880 0.96019 0.97957 1.20664 1.00909 0.95117 0.96953 1.20718 1.03276 0.99453 0.93555 1.20662 0.99642 0.95432 0.97706 1.20738 0.98921 0.94198 0.97071 0.90545 0.92214 0.89750 0.85259 0.83408 0.80235 0.91266 0.87395 0.87649 0.87802 0.87582 0.87788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 9.14 36.00 0.33 -1.50 16 2 C -0.01 -0.14 5.95 -103.89 -0.62 -0.76 16 3 C -0.19 -2.92 9.82 -39.50 -0.39 -3.30 16 4 C 0.10 1.53 11.17 -17.46 -0.20 1.33 16 5 N -0.50 -9.43 10.35 -12.88 -0.13 -9.57 16 6 C 0.15 3.09 8.88 -17.10 -0.15 2.94 16 7 C -0.15 -3.09 5.27 -104.83 -0.55 -3.64 16 8 C 0.51 12.06 6.66 -12.40 -0.08 11.98 16 9 O -0.58 -14.62 14.43 5.30 0.08 -14.54 16 10 N -0.40 -9.68 2.69 -60.03 -0.16 -9.84 16 11 C -0.36 -8.57 6.75 -15.00 -0.10 -8.68 16 12 H 0.10 2.38 6.03 -52.49 -0.32 2.06 16 13 C 0.05 1.18 5.24 -17.47 -0.09 1.09 16 14 N -0.84 -20.87 10.58 55.50 0.59 -20.29 16 15 Si 0.92 18.94 29.56 -169.99 -5.02 13.91 16 16 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 17 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 18 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 19 C 0.24 5.81 2.60 -83.72 -0.22 5.59 16 20 C -0.12 -2.65 9.22 -39.36 -0.36 -3.01 16 21 C -0.12 -2.33 10.04 -39.61 -0.40 -2.73 16 22 C -0.15 -2.87 10.04 -39.52 -0.40 -3.27 16 23 C -0.12 -2.33 10.04 -39.61 -0.40 -2.73 16 24 C -0.09 -2.08 8.89 -39.37 -0.35 -2.43 16 25 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 27 H 0.08 1.59 6.15 -51.93 -0.32 1.27 16 28 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 29 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.18 3.89 6.26 -52.49 -0.33 3.56 16 31 H 0.28 6.65 8.32 -40.82 -0.34 6.31 16 32 H 0.11 2.41 8.06 -52.49 -0.42 1.99 16 33 H 0.11 1.77 8.06 -52.48 -0.42 1.34 16 34 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 35 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.10 2.46 8.06 -52.48 -0.42 2.03 16 LS Contribution 308.05 15.07 4.64 4.64 Total: -1.00 -27.88 308.05 -7.89 -35.77 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -3.90 Total: 9.01 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -3.97 Total: -9.10 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.29 Total: -39.69 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.08 Total: -14.54 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.91 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.88 -7.89 -35.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336024151.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.602 kcal (2) G-P(sol) polarization free energy of solvation -27.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds