Wall clock time and date at job start Tue Mar 31 2020 05:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39792 * 120.01013 * 330.68981 * 3 2 1 5 5 C 1.37123 * 119.98917 * 180.30101 * 4 3 2 6 6 C 1.39720 * 120.00614 * 359.45006 * 5 4 3 7 7 C 1.47664 * 119.98761 * 180.30336 * 6 5 4 8 8 C 1.31233 * 117.81076 * 244.98618 * 7 6 5 9 9 C 1.50352 * 123.41665 * 180.54593 * 8 7 6 10 10 N 1.46988 * 109.18853 * 349.43223 * 9 8 7 11 11 C 1.34778 * 121.33104 * 223.04058 * 10 9 8 12 12 O 1.21688 * 120.00147 * 180.02562 * 11 10 9 13 13 C 1.46378 * 119.99860 * 0.02562 * 11 10 9 14 14 H 1.07995 * 120.00374 * 352.21962 * 13 11 10 15 15 C 1.40048 * 119.99942 * 172.21622 * 13 11 10 16 16 N 1.30678 * 119.99842 * 6.01862 * 15 13 11 17 17 Si 1.86797 * 120.00047 * 186.01072 * 15 13 11 18 18 H 1.48503 * 109.47115 * 94.98290 * 17 15 13 19 19 H 1.48500 * 109.47238 * 214.98004 * 17 15 13 20 20 H 1.48497 * 109.47440 * 334.97995 * 17 15 13 21 21 C 1.47310 * 117.33521 * 43.05940 * 10 9 8 22 22 C 1.49990 * 117.82014 * 65.24411 * 7 6 5 23 23 C 1.39712 * 120.02002 * 0.54620 * 6 5 4 24 24 C 1.37116 * 120.00844 * 359.73359 * 23 6 5 25 25 H 1.07994 * 120.00552 * 0.02562 * 4 3 2 26 26 H 1.08000 * 119.99633 * 179.69547 * 5 4 3 27 27 H 1.07999 * 118.29469 * 0.78848 * 8 7 6 28 28 H 1.09002 * 109.67434 * 229.41381 * 9 8 7 29 29 H 1.08994 * 109.38506 * 109.27161 * 9 8 7 30 30 H 0.97004 * 119.99533 * 180.02562 * 16 15 13 31 31 H 1.09007 * 109.76097 * 178.08542 * 21 10 9 32 32 H 1.08997 * 109.76168 * 57.31750 * 21 10 9 33 33 H 1.08992 * 109.31501 * 281.29856 * 22 7 6 34 34 H 1.09005 * 109.30918 * 40.91453 * 22 7 6 35 35 H 1.07993 * 119.99619 * 179.75556 * 23 6 5 36 36 H 1.08004 * 120.00497 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2677 -1.0546 0.5926 5 6 4.6389 -1.0505 0.5978 6 6 5.3367 0.0025 0.0008 7 6 6.8134 0.0031 0.0007 8 6 7.4252 0.9492 0.6736 9 6 8.9215 1.0765 0.7489 10 7 9.5382 -0.1335 0.1868 11 6 10.5886 -0.7281 0.7866 12 8 11.0808 -1.7289 0.2998 13 6 11.1373 -0.1699 2.0235 14 1 10.7858 0.7838 2.3882 15 6 12.1182 -0.8729 2.7342 16 7 12.6284 -1.9674 2.2349 17 14 12.6975 -0.2457 4.3956 18 1 11.9341 -0.9235 5.4742 19 1 14.1450 -0.5351 4.5568 20 1 12.4738 1.2201 4.4769 21 6 8.9626 -0.6701 -1.0585 22 6 7.5138 -1.0740 -0.7731 23 6 4.6379 1.0573 -0.5916 24 6 3.2667 1.0568 -0.5922 25 1 2.7283 -1.8707 1.0501 26 1 5.1795 -1.8632 1.0599 27 1 6.8228 1.6718 1.2039 28 1 9.2280 1.1924 1.7885 29 1 9.2398 1.9474 0.1760 30 1 13.3076 -2.4545 2.7273 31 1 9.5314 -1.5420 -1.3817 32 1 8.9860 0.0946 -1.8348 33 1 7.5043 -1.9977 -0.1947 34 1 6.9945 -1.2348 -1.7179 35 1 5.1776 1.8729 -1.0495 36 1 2.7265 1.8724 -1.0498 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336068852.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:11 Heat of formation + Delta-G solvation = 34.096259 kcal Electronic energy + Delta-G solvation = -20417.147340 eV Core-core repulsion = 17252.434481 eV Total energy + Delta-G solvation = -3164.712860 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.91880 -38.42349 -36.78309 -35.78414 -33.08079 -32.50645 -31.45672 -30.71685 -29.98144 -26.55466 -25.23028 -23.36264 -22.73532 -22.50420 -19.79237 -19.15741 -17.84876 -16.92506 -15.79003 -15.67082 -15.13475 -14.78018 -14.65601 -14.31685 -14.19949 -14.14634 -13.79436 -13.52382 -13.20471 -13.03862 -12.63553 -12.40997 -12.19541 -12.11120 -11.88843 -11.51514 -11.31902 -11.24266 -10.99156 -10.91463 -10.40682 -10.23970 -10.11807 -9.32302 -9.11767 -8.90087 -8.40944 -7.65513 -7.31151 -6.25592 -4.69775 0.47163 1.14543 2.25959 2.42769 2.76706 3.10245 3.17947 3.20747 3.65037 3.65973 4.03616 4.41400 4.51694 4.61496 4.64659 4.67140 5.07114 5.20348 5.27250 5.43087 5.57700 5.65078 5.67392 5.74929 5.87988 5.91389 5.98616 6.05585 6.21011 6.28387 6.31915 6.44479 6.50624 6.59318 6.78662 7.05286 7.24124 7.39947 7.51917 8.05825 8.30276 8.97131 9.37470 10.51720 10.70266 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.028930 B = 0.003393 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.622812 B = 8250.954974 C = 8560.911447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C 0.260 3.740 3 C -0.046 4.046 4 C -0.066 4.066 5 C -0.111 4.111 6 C -0.002 4.002 7 C -0.104 4.104 8 C -0.134 4.134 9 C 0.149 3.851 10 N -0.644 5.644 11 C 0.562 3.438 12 O -0.577 6.577 13 C -0.544 4.544 14 H 0.072 0.928 15 C 0.088 3.912 16 N -0.767 5.767 17 Si 0.906 3.094 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.264 1.264 21 C 0.120 3.880 22 C -0.088 4.088 23 C -0.115 4.115 24 C -0.067 4.067 25 H 0.131 0.869 26 H 0.136 0.864 27 H 0.110 0.890 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.269 0.731 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.135 0.865 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.701 6.009 -3.240 15.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.055 4.055 3 C -0.049 4.049 4 C -0.086 4.086 5 C -0.129 4.129 6 C -0.003 4.003 7 C -0.104 4.104 8 C -0.153 4.153 9 C 0.025 3.975 10 N -0.382 5.382 11 C 0.368 3.632 12 O -0.459 6.459 13 C -0.581 4.581 14 H 0.090 0.910 15 C -0.132 4.132 16 N -0.395 5.395 17 Si 0.730 3.270 18 H -0.198 1.198 19 H -0.204 1.204 20 H -0.188 1.188 21 C -0.004 4.004 22 C -0.126 4.126 23 C -0.133 4.133 24 C -0.088 4.088 25 H 0.149 0.851 26 H 0.154 0.846 27 H 0.128 0.872 28 H 0.120 0.880 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.153 0.847 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.032 5.281 -3.487 16.310 hybrid contribution 0.485 0.384 0.914 1.104 sum -14.548 5.665 -2.572 15.822 Atomic orbital electron populations 1.81247 1.12164 1.07968 1.08995 1.25801 0.92735 0.93539 0.93437 1.16060 0.84092 0.98587 1.06196 1.20981 0.94271 0.96615 0.96769 1.21173 0.93232 0.98909 0.99607 1.19523 0.93877 0.93175 0.93708 1.19526 0.90107 0.98828 1.01919 1.23048 0.97584 0.97228 0.97432 1.20297 0.87744 0.88598 1.00825 1.48320 1.35123 1.29116 1.25686 1.18224 0.77507 0.83073 0.84385 1.90596 1.61319 1.27536 1.66487 1.20946 1.22806 1.06977 1.07363 0.90952 1.25725 0.94785 0.94144 0.98546 1.70025 1.20513 1.13292 1.35717 0.86384 0.78260 0.79926 0.82382 1.19783 1.20435 1.18802 1.21180 0.91693 0.99495 0.88066 1.20675 0.96400 0.96756 0.98763 1.21147 0.93232 0.98739 1.00157 1.20952 0.94259 0.96614 0.96938 0.85072 0.84635 0.87209 0.87974 0.92376 0.92056 0.89376 0.93480 0.90686 0.91271 0.84746 0.85118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.48 18.54 41.84 0.78 -4.70 16 2 C 0.26 2.75 15.32 -22.47 -0.34 2.41 16 3 C -0.05 -0.42 5.74 -106.81 -0.61 -1.03 16 4 C -0.07 -0.58 9.72 -39.41 -0.38 -0.96 16 5 C -0.11 -1.11 9.69 -39.43 -0.38 -1.50 16 6 C 0.00 -0.02 5.08 -104.94 -0.53 -0.55 16 7 C -0.10 -1.37 5.27 -102.90 -0.54 -1.91 16 8 C -0.13 -1.84 9.45 -36.26 -0.34 -2.18 16 9 C 0.15 2.53 6.45 -5.10 -0.03 2.50 16 10 N -0.64 -13.77 2.96 -175.82 -0.52 -14.29 16 11 C 0.56 15.34 7.65 -12.98 -0.10 15.24 16 12 O -0.58 -18.06 14.54 5.20 0.08 -17.99 16 13 C -0.54 -14.62 8.76 -35.63 -0.31 -14.93 16 14 H 0.07 1.75 5.98 -52.49 -0.31 1.44 16 15 C 0.09 2.37 5.49 -17.36 -0.10 2.27 16 16 N -0.77 -22.34 11.86 55.55 0.66 -21.68 16 17 Si 0.91 19.36 29.56 -169.99 -5.03 14.34 16 18 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 19 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 20 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 21 C 0.12 2.17 6.49 -3.56 -0.02 2.15 16 22 C -0.09 -1.29 5.90 -28.18 -0.17 -1.45 16 23 C -0.11 -1.03 9.61 -39.44 -0.38 -1.41 16 24 C -0.07 -0.55 9.72 -39.41 -0.38 -0.93 16 25 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 26 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 27 H 0.11 1.25 7.94 -52.49 -0.42 0.83 16 28 H 0.10 1.82 5.72 -51.93 -0.30 1.53 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16 31 H 0.09 1.81 7.06 -51.93 -0.37 1.44 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 35 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 LS Contribution 318.89 15.07 4.81 4.81 Total: -1.00 -33.43 318.89 -7.77 -41.20 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -3.91 Total: 0.61 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -4.63 Total: -2.29 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.91 Total: -40.67 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.08 Total: -17.99 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.43 -7.77 -41.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336068852.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.295 kcal (2) G-P(sol) polarization free energy of solvation -33.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds