Wall clock time and date at job start Tue Mar 31 2020 05:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38358 * 119.85509 * 2 1 4 4 C 1.37952 * 120.14952 * 179.97438 * 3 2 1 5 5 C 1.39596 * 119.84756 * 359.97438 * 4 3 2 6 6 C 1.47805 * 120.13998 * 180.02562 * 5 4 3 7 7 O 1.21547 * 120.00763 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99805 * 180.02562 * 6 5 4 9 9 C 1.39383 * 120.00085 * 174.92896 * 8 6 5 10 10 C 1.38624 * 119.57933 * 174.23207 * 9 8 6 11 11 C 1.40803 * 118.79223 * 179.72293 * 10 9 8 12 12 C 1.41550 * 120.99512 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99589 * 153.23007 * 12 11 10 14 14 C 1.40026 * 119.99945 * 333.22928 * 12 11 10 15 15 N 1.30742 * 120.00145 * 342.23527 * 14 12 11 16 16 Si 1.86804 * 120.00065 * 162.23497 * 14 12 11 17 17 H 1.48500 * 109.46975 * 59.99643 * 16 14 12 18 18 H 1.48495 * 109.47249 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46524 * 300.00158 * 16 14 12 20 20 C 1.41174 * 118.01060 * 359.97438 * 11 10 9 21 21 C 1.37589 * 119.02108 * 0.02562 * 20 11 10 22 22 N 1.32087 * 121.10636 * 0.02562 * 21 20 11 23 23 C 1.39592 * 119.70953 * 0.27990 * 5 4 3 24 24 C 1.37955 * 119.85026 * 359.44955 * 23 5 4 25 25 H 1.08998 * 109.47602 * 89.99826 * 1 2 3 26 26 H 1.09005 * 109.47711 * 210.00250 * 1 2 3 27 27 H 1.09002 * 109.47077 * 329.99890 * 1 2 3 28 28 H 1.08007 * 119.92088 * 359.95263 * 3 2 1 29 29 H 1.08003 * 120.07129 * 180.02562 * 4 3 2 30 30 H 0.97007 * 119.99792 * 354.93336 * 8 6 5 31 31 H 1.07997 * 120.60454 * 359.74263 * 10 9 8 32 32 H 0.96996 * 120.00184 * 180.02562 * 15 14 12 33 33 H 1.07996 * 120.49397 * 179.97438 * 20 11 10 34 34 H 1.07999 * 119.44997 * 179.97438 * 21 20 11 35 35 H 1.08001 * 120.07423 * 179.72214 * 23 5 4 36 36 H 1.08002 * 119.92517 * 180.25189 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5752 1.2070 0.0005 5 6 4.2762 -0.0002 0.0016 6 6 5.7543 -0.0001 0.0028 7 8 6.3621 1.0525 0.0032 8 7 6.4281 -1.1673 0.0033 9 6 7.8180 -1.1697 -0.1023 10 6 8.5114 -2.3638 0.0195 11 6 9.9147 -2.3479 -0.0958 12 6 10.6692 -3.5398 0.0213 13 1 11.6270 -3.6231 -0.4707 14 6 10.1738 -4.6109 0.7751 15 7 9.2141 -4.4125 1.6405 16 14 10.8840 -6.3231 0.5441 17 1 12.3351 -6.3036 0.8590 18 1 10.1925 -7.2725 1.4527 19 1 10.6886 -6.7542 -0.8635 20 6 10.5465 -1.1078 -0.3318 21 6 9.7736 0.0256 -0.4382 22 7 8.4591 -0.0316 -0.3228 23 6 3.5751 -1.2072 -0.0038 24 6 2.1956 -1.2001 0.0014 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3635 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6520 2.1332 -0.0008 29 1 4.1116 2.1445 0.0010 30 1 5.9459 -2.0058 0.0771 31 1 7.9850 -3.2895 0.1993 32 1 8.8711 -5.1544 2.1630 33 1 11.6207 -1.0493 -0.4266 34 1 10.2498 0.9780 -0.6183 35 1 4.1115 -2.1446 -0.0075 36 1 1.6520 -2.1333 0.0013 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336077940.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:33 Heat of formation + Delta-G solvation = 20.985748 kcal Electronic energy + Delta-G solvation = -20437.645600 eV Core-core repulsion = 17272.364226 eV Total energy + Delta-G solvation = -3165.281374 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.10166 -38.80964 -37.52265 -34.38300 -33.82509 -32.83908 -31.02350 -30.57277 -28.86736 -27.17855 -25.99502 -23.01173 -22.68484 -21.96508 -21.10752 -19.70512 -17.90847 -17.58905 -15.91239 -15.59140 -15.24359 -14.98298 -14.70787 -14.60518 -14.24920 -13.91304 -13.84292 -13.61743 -13.34126 -12.79015 -12.63039 -12.45590 -12.42504 -11.88707 -11.63981 -11.46036 -11.25457 -11.07205 -10.90663 -10.32042 -10.20190 -9.76187 -9.47111 -9.33682 -9.04970 -8.73511 -8.00752 -7.76425 -7.04690 -6.84725 -4.62203 0.87697 1.32316 2.60616 2.78690 3.00173 3.02996 3.17953 3.35099 3.59206 3.84133 4.04657 4.64376 4.65907 4.68254 4.85966 5.02297 5.14444 5.30223 5.35586 5.54348 5.59628 5.65245 5.84241 5.93750 5.97142 6.25680 6.37163 6.43242 6.56442 6.63518 6.78947 6.84278 6.92540 7.06275 7.35848 7.42910 7.75306 7.90120 8.18377 8.39542 8.68092 8.72503 8.85075 9.66087 10.06110 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.022273 B = 0.003898 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.828225 B = 7181.848818 C = 8323.117048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.071 4.071 3 C -0.130 4.130 4 C -0.059 4.059 5 C -0.129 4.129 6 C 0.541 3.459 7 O -0.478 6.478 8 N -0.653 5.653 9 C 0.338 3.662 10 C -0.241 4.241 11 C 0.147 3.853 12 C -0.460 4.460 13 H 0.083 0.917 14 C 0.080 3.920 15 N -0.787 5.787 16 Si 0.910 3.090 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.263 1.263 20 C -0.283 4.283 21 C 0.120 3.880 22 N -0.555 5.555 23 C -0.085 4.085 24 C -0.129 4.129 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.126 0.874 29 H 0.136 0.864 30 H 0.406 0.594 31 H 0.122 0.878 32 H 0.283 0.717 33 H 0.103 0.897 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.651 1.604 -1.727 14.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.071 4.071 3 C -0.148 4.148 4 C -0.078 4.078 5 C -0.132 4.132 6 C 0.327 3.673 7 O -0.350 6.350 8 N -0.299 5.299 9 C 0.114 3.886 10 C -0.266 4.266 11 C 0.139 3.861 12 C -0.491 4.491 13 H 0.101 0.899 14 C -0.139 4.139 15 N -0.413 5.413 16 Si 0.734 3.266 17 H -0.189 1.189 18 H -0.203 1.203 19 H -0.187 1.187 20 C -0.307 4.307 21 C -0.034 4.034 22 N -0.274 5.274 23 C -0.104 4.104 24 C -0.147 4.147 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.144 0.856 29 H 0.154 0.846 30 H 0.242 0.758 31 H 0.140 0.860 32 H 0.094 0.906 33 H 0.121 0.879 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.903 3.067 -1.624 15.301 hybrid contribution 0.593 -2.154 0.193 2.243 sum -14.309 0.913 -1.431 14.410 Atomic orbital electron populations 1.20834 0.91075 1.02911 1.02453 1.20105 0.96182 0.93244 0.97618 1.21003 0.93833 0.97701 1.02286 1.21286 0.93739 0.97919 0.94810 1.20173 0.93410 0.94399 1.05243 1.18335 0.86527 0.84440 0.78000 1.90835 1.68962 1.30313 1.44847 1.43333 1.05623 1.08974 1.72010 1.18124 0.82319 0.91093 0.97070 1.21427 0.94892 0.95730 1.14574 1.17543 0.90911 0.92087 0.85589 1.19519 1.04927 0.96922 1.27745 0.89928 1.25939 0.94029 1.01148 0.92828 1.69781 1.22289 1.33788 1.15403 0.86332 0.80092 0.80682 0.79446 1.18869 1.20267 1.18701 1.21918 0.99059 0.93647 1.16041 1.21772 0.88671 0.96865 0.96116 1.67189 1.10149 1.26670 1.23417 1.21373 0.94501 0.97271 0.97210 1.20960 0.93828 0.97738 1.02142 0.90966 0.91391 0.91409 0.85556 0.84589 0.75774 0.86012 0.90629 0.87879 0.85786 0.85490 0.85562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 10.00 36.00 0.36 -0.46 16 2 C -0.07 -0.73 5.89 -104.53 -0.62 -1.34 16 3 C -0.13 -1.45 9.68 -39.64 -0.38 -1.83 16 4 C -0.06 -0.82 9.60 -39.18 -0.38 -1.20 16 5 C -0.13 -2.02 5.87 -104.97 -0.62 -2.63 16 6 C 0.54 10.93 7.72 -12.35 -0.10 10.83 16 7 O -0.48 -11.46 14.64 5.32 0.08 -11.39 16 8 N -0.65 -13.34 5.33 -12.37 -0.07 -13.41 16 9 C 0.34 8.37 7.40 -154.78 -1.15 7.22 16 10 C -0.24 -6.14 8.60 -38.47 -0.33 -6.47 16 11 C 0.15 3.88 5.56 -106.55 -0.59 3.28 16 12 C -0.46 -11.81 9.10 -37.65 -0.34 -12.15 16 13 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 14 C 0.08 1.93 5.15 -17.35 -0.09 1.84 16 15 N -0.79 -19.47 11.18 55.55 0.62 -18.85 16 16 Si 0.91 17.82 29.60 -169.99 -5.03 12.79 16 17 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 18 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 19 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 20 C -0.28 -6.99 9.90 -38.70 -0.38 -7.37 16 21 C 0.12 2.92 11.15 -17.68 -0.20 2.72 16 22 N -0.56 -14.44 7.89 -12.54 -0.10 -14.54 16 23 C -0.08 -1.08 9.54 -39.18 -0.37 -1.46 16 24 C -0.13 -1.38 9.68 -39.64 -0.38 -1.76 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 27 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 28 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 29 H 0.14 1.94 7.65 -52.48 -0.40 1.54 16 30 H 0.41 6.82 6.75 -40.82 -0.28 6.55 16 31 H 0.12 3.05 6.46 -52.49 -0.34 2.71 16 32 H 0.28 6.34 8.29 -40.82 -0.34 6.00 16 33 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 34 H 0.12 2.62 8.06 -52.49 -0.42 2.20 16 35 H 0.13 1.42 6.42 -52.49 -0.34 1.08 16 36 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 314.82 15.07 4.74 4.74 Total: -1.00 -31.69 314.82 -9.17 -40.86 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -3.86 Total: 10.57 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -5.57 Total: -10.79 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.46 Total: -46.80 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.69 -9.17 -40.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336077940.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.850 kcal (2) G-P(sol) polarization free energy of solvation -31.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds