Wall clock time and date at job start Tue Mar 31 2020 05:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38572 * 120.46954 * 2 1 4 4 C 1.38636 * 118.49608 * 179.75962 * 3 2 1 5 5 C 1.38590 * 119.37272 * 0.52324 * 4 3 2 6 6 N 1.31506 * 120.90719 * 359.71963 * 5 4 3 7 7 C 1.32826 * 121.63009 * 0.02570 * 6 5 4 8 8 C 1.47968 * 119.73173 * 180.02562 * 7 6 5 9 9 O 1.21556 * 119.99909 * 156.48569 * 8 7 6 10 10 N 1.34773 * 119.99818 * 336.48556 * 8 7 6 11 11 C 1.36852 * 120.00159 * 128.16238 * 10 8 7 12 12 H 1.07997 * 120.00185 * 156.27951 * 11 10 8 13 13 C 1.39027 * 119.99543 * 336.27595 * 11 10 8 14 14 N 1.31339 * 120.00421 * 354.89829 * 13 11 10 15 15 Si 1.86804 * 119.99863 * 174.89477 * 13 11 10 16 16 H 1.48501 * 109.46928 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47256 * 120.00097 * 15 13 11 18 18 H 1.48498 * 109.46906 * 240.00303 * 15 13 11 19 19 C 1.39714 * 120.00199 * 308.16068 * 10 8 7 20 20 C 1.38978 * 120.07542 * 353.41040 * 19 10 8 21 21 C 1.38081 * 119.91564 * 179.74599 * 20 19 10 22 22 C 1.38305 * 120.07917 * 0.52733 * 21 20 19 23 23 C 1.38314 * 120.16100 * 359.72353 * 22 21 20 24 24 C 1.38076 * 120.08133 * 0.02562 * 23 22 21 25 25 H 1.08999 * 109.47279 * 267.25530 * 1 2 3 26 26 H 1.09004 * 109.47197 * 147.26254 * 1 2 3 27 27 H 1.09004 * 109.47505 * 27.25696 * 1 2 3 28 28 H 1.08001 * 120.75354 * 359.97438 * 3 2 1 29 29 H 1.08006 * 120.31301 * 180.24695 * 4 3 2 30 30 H 1.07992 * 119.54830 * 179.74545 * 5 4 3 31 31 H 0.97005 * 120.00297 * 185.01123 * 14 13 11 32 32 H 1.08001 * 120.04392 * 359.97438 * 20 19 10 33 33 H 1.07996 * 119.95804 * 180.24767 * 21 20 19 34 34 H 1.08002 * 119.92050 * 179.70607 * 22 21 20 35 35 H 1.08001 * 119.96057 * 180.02562 * 23 22 21 36 36 H 1.07991 * 120.04285 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2097 1.1943 0.0000 4 6 3.5952 1.1466 0.0051 5 6 4.2330 -0.0838 -0.0010 6 7 3.5421 -1.2027 -0.0060 7 6 2.2139 -1.2013 -0.0060 8 6 1.4787 -2.4854 -0.0112 9 8 0.3390 -2.5349 0.4087 10 7 2.0726 -3.6001 -0.4814 11 6 2.0904 -4.7383 0.2781 12 1 2.2013 -5.7023 -0.1962 13 6 1.9658 -4.6538 1.6602 14 7 1.9319 -3.4787 2.2459 15 14 1.8466 -6.2115 2.6842 16 1 1.9077 -7.3967 1.7915 17 1 2.9757 -6.2582 3.6477 18 1 0.5611 -6.2181 3.4275 19 6 2.6702 -3.5935 -1.7443 20 6 2.5358 -2.4858 -2.5727 21 6 3.1322 -2.4808 -3.8181 22 6 3.8534 -3.5807 -4.2457 23 6 3.9849 -4.6869 -3.4259 24 6 3.3957 -4.6970 -2.1773 25 1 -0.3634 -0.0492 1.0265 26 1 -0.3634 -0.8644 -0.5558 27 1 -0.3634 0.9136 -0.4707 28 1 1.6898 2.1410 -0.0004 29 1 4.1721 2.0597 0.0093 30 1 5.3122 -0.1243 -0.0012 31 1 1.9183 -3.4195 3.2140 32 1 1.9686 -1.6285 -2.2414 33 1 3.0315 -1.6187 -4.4608 34 1 4.3148 -3.5759 -5.2222 35 1 4.5492 -5.5439 -3.7629 36 1 3.4984 -5.5612 -1.5379 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336101094.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:17 Heat of formation + Delta-G solvation = 50.231661 kcal Electronic energy + Delta-G solvation = -22257.995330 eV Core-core repulsion = 19093.982154 eV Total energy + Delta-G solvation = -3164.013176 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.27782 -38.78794 -37.36746 -34.74375 -32.90297 -32.25494 -31.34768 -30.07911 -28.45622 -27.09053 -25.46789 -23.77041 -22.22640 -21.51941 -21.29172 -19.65069 -17.53171 -17.37811 -16.15711 -15.69625 -15.04886 -15.00043 -14.64439 -14.16530 -13.97768 -13.63086 -13.32548 -13.26282 -12.68931 -12.59044 -12.35683 -12.18454 -12.05189 -11.67498 -11.56456 -11.37522 -11.18810 -10.81497 -10.70211 -10.38707 -10.09329 -9.88922 -9.27396 -9.13209 -8.70359 -8.49271 -8.34901 -8.13418 -6.87124 -6.50612 -3.98256 1.32108 1.75179 2.24201 2.34100 3.12950 3.19723 3.24348 3.59606 4.03801 4.43410 4.49717 4.69160 4.98971 5.14798 5.21764 5.34411 5.44377 5.46770 5.65057 5.67519 5.79977 5.91972 6.06027 6.12180 6.20738 6.23381 6.42090 6.45133 6.53292 6.68096 6.76645 6.82776 7.14383 7.21431 7.28746 7.34364 7.39135 7.71618 7.93753 8.48960 8.64466 8.89618 9.22588 9.62545 10.61068 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.012224 B = 0.009641 C = 0.006422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.959011 B = 2903.476809 C = 4358.631145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.105 4.105 3 C -0.091 4.091 4 C -0.172 4.172 5 C 0.086 3.914 6 N -0.426 5.426 7 C 0.121 3.879 8 C 0.604 3.396 9 O -0.487 6.487 10 N -0.419 5.419 11 C -0.317 4.317 12 H 0.102 0.898 13 C 0.035 3.965 14 N -0.853 5.853 15 Si 0.939 3.061 16 H -0.266 1.266 17 H -0.279 1.279 18 H -0.279 1.279 19 C 0.214 3.786 20 C -0.201 4.201 21 C -0.079 4.079 22 C -0.205 4.205 23 C -0.082 4.082 24 C -0.178 4.178 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.053 0.947 28 H 0.130 0.870 29 H 0.128 0.872 30 H 0.150 0.850 31 H 0.276 0.724 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.857 6.519 -5.760 9.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.108 4.108 3 C -0.117 4.117 4 C -0.192 4.192 5 C -0.074 4.074 6 N -0.136 5.136 7 C -0.019 4.019 8 C 0.395 3.605 9 O -0.359 6.359 10 N -0.123 5.123 11 C -0.443 4.443 12 H 0.119 0.881 13 C -0.172 4.172 14 N -0.489 5.489 15 Si 0.765 3.235 16 H -0.190 1.190 17 H -0.205 1.205 18 H -0.205 1.205 19 C 0.109 3.891 20 C -0.224 4.224 21 C -0.097 4.097 22 C -0.225 4.225 23 C -0.101 4.101 24 C -0.200 4.200 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.072 0.928 28 H 0.148 0.852 29 H 0.146 0.854 30 H 0.167 0.833 31 H 0.087 0.913 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.431 5.752 -5.103 8.065 hybrid contribution -0.112 0.372 0.866 0.949 sum 2.319 6.124 -4.237 7.800 Atomic orbital electron populations 1.20808 0.89865 1.02126 1.03338 1.20937 0.97928 0.92958 0.99005 1.21313 0.94102 0.97511 0.98773 1.22153 0.95138 0.99350 1.02585 1.22739 1.00160 0.87667 0.96876 1.67790 1.07358 1.30397 1.08055 1.21475 0.89863 0.94073 0.96476 1.17069 0.84341 0.81695 0.77368 1.90536 1.17389 1.84666 1.43287 1.40791 1.47006 1.11115 1.13414 1.19590 1.50991 0.85611 0.88126 0.88057 1.25356 0.95998 0.98539 0.97265 1.69400 1.45214 1.23199 1.11091 0.85664 0.77947 0.80447 0.79408 1.19044 1.20520 1.20482 1.18040 0.90777 0.93821 0.86501 1.20541 1.07988 0.97945 0.95920 1.20594 0.96829 0.97435 0.94887 1.20593 1.06164 0.95461 1.00290 1.20765 0.98234 0.97357 0.93714 1.20700 1.02447 0.99502 0.97361 0.90533 0.89945 0.92784 0.85223 0.85377 0.83256 0.91288 0.87969 0.87592 0.87756 0.87271 0.85694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.87 8.74 36.01 0.31 -1.55 16 2 C -0.11 -2.05 5.93 -104.07 -0.62 -2.67 16 3 C -0.09 -1.43 9.84 -39.31 -0.39 -1.81 16 4 C -0.17 -2.55 10.11 -39.30 -0.40 -2.95 16 5 C 0.09 1.51 11.18 -17.56 -0.20 1.31 16 6 N -0.43 -9.52 9.35 -9.81 -0.09 -9.61 16 7 C 0.12 2.78 4.32 -83.02 -0.36 2.42 16 8 C 0.60 15.87 3.40 -12.27 -0.04 15.82 16 9 O -0.49 -13.65 13.47 5.32 0.07 -13.58 16 10 N -0.42 -11.03 2.71 -59.94 -0.16 -11.20 16 11 C -0.32 -8.55 8.80 -15.02 -0.13 -8.68 16 12 H 0.10 2.57 6.40 -52.49 -0.34 2.24 16 13 C 0.04 0.95 5.17 -17.47 -0.09 0.86 16 14 N -0.85 -24.15 10.68 55.50 0.59 -23.56 16 15 Si 0.94 20.87 29.56 -169.99 -5.02 15.85 16 16 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 C 0.21 5.02 6.02 -83.72 -0.50 4.52 16 20 C -0.20 -4.30 8.36 -39.36 -0.33 -4.63 16 21 C -0.08 -1.43 10.04 -39.61 -0.40 -1.83 16 22 C -0.20 -3.52 10.04 -39.53 -0.40 -3.92 16 23 C -0.08 -1.47 10.04 -39.61 -0.40 -1.87 16 24 C -0.18 -3.79 9.24 -39.37 -0.36 -4.15 16 25 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 26 H 0.08 1.65 6.13 -51.93 -0.32 1.33 16 27 H 0.05 0.75 8.08 -51.93 -0.42 0.33 16 28 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 30 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16 31 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.10 2.22 5.81 -52.49 -0.30 1.91 16 33 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.13 2.64 6.34 -52.49 -0.33 2.31 16 LS Contribution 305.87 15.07 4.61 4.61 Total: -1.00 -31.77 305.87 -8.11 -39.87 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -3.81 Total: 6.73 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -4.29 Total: -9.12 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.34 Total: -44.37 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.07 Total: -13.58 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.77 -8.11 -39.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336101094.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.106 kcal (2) G-P(sol) polarization free energy of solvation -31.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds