Wall clock time and date at job start Tue Mar 31 2020 05:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38127 * 119.54888 * 2 1 4 4 C 1.39902 * 118.99130 * 180.02562 * 3 2 1 5 5 C 1.47955 * 120.93516 * 180.02562 * 4 3 2 6 6 O 1.21564 * 119.99179 * 326.79184 * 5 4 3 7 7 N 1.34767 * 120.00391 * 146.79487 * 5 4 3 8 8 C 1.36855 * 119.99731 * 356.99441 * 7 5 4 9 9 H 1.07998 * 120.00326 * 321.35976 * 8 7 5 10 10 C 1.39031 * 119.99914 * 141.36590 * 8 7 5 11 11 N 1.31339 * 120.00280 * 163.69725 * 10 8 7 12 12 Si 1.86803 * 120.00098 * 343.69365 * 10 8 7 13 13 H 1.48503 * 109.46990 * 84.71994 * 12 10 8 14 14 H 1.48493 * 109.47512 * 204.72068 * 12 10 8 15 15 H 1.48501 * 109.47160 * 324.72202 * 12 10 8 16 16 C 1.39711 * 120.00131 * 176.99582 * 7 5 4 17 17 C 1.38975 * 120.07940 * 135.06995 * 16 7 5 18 18 C 1.38078 * 119.91665 * 180.23347 * 17 16 7 19 19 C 1.38311 * 120.07969 * 359.46448 * 18 17 16 20 20 C 1.38301 * 120.16171 * 0.55745 * 19 18 17 21 21 C 1.38080 * 120.07817 * 359.69735 * 20 19 18 22 22 C 1.39954 * 118.13791 * 0.27404 * 4 3 2 23 23 C 1.38082 * 118.98799 * 359.43574 * 22 4 3 24 24 N 1.31820 * 119.55080 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.47401 * 89.99682 * 1 2 3 26 26 H 1.09000 * 109.47149 * 209.99844 * 1 2 3 27 27 H 1.09003 * 109.47241 * 329.99753 * 1 2 3 28 28 H 1.08006 * 120.49993 * 359.97438 * 3 2 1 29 29 H 0.97000 * 120.00112 * 180.02562 * 11 10 8 30 30 H 1.08004 * 120.04322 * 359.94770 * 17 16 7 31 31 H 1.08006 * 119.95742 * 179.72150 * 18 17 16 32 32 H 1.08006 * 119.91871 * 180.25873 * 19 18 17 33 33 H 1.07996 * 119.96420 * 179.72484 * 20 19 18 34 34 H 1.08003 * 120.04292 * 180.02562 * 21 20 19 35 35 H 1.07993 * 120.50495 * 179.72506 * 22 4 3 36 36 H 1.07999 * 119.54692 * 180.29527 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1881 1.2016 0.0000 4 6 3.5871 1.1880 -0.0005 5 6 4.3600 2.4496 0.0000 6 8 3.9261 3.4284 -0.5758 7 7 5.5450 2.5137 0.6387 8 6 6.0045 1.4311 1.3384 9 1 5.3166 0.8260 1.9102 10 6 7.3571 1.1103 1.3133 11 7 7.8549 0.2926 2.2125 12 14 8.4664 1.8422 0.0006 13 1 8.9322 3.1829 0.4373 14 1 9.6385 0.9547 -0.2082 15 1 7.7103 1.9709 -1.2710 16 6 6.3042 3.6854 0.5866 17 6 6.8885 4.1888 1.7427 18 6 7.6341 5.3497 1.6882 19 6 7.8091 6.0052 0.4829 20 6 7.2288 5.5074 -0.6695 21 6 6.4774 4.3499 -0.6217 22 6 4.2351 -0.0525 -0.0070 23 6 3.4744 -1.2049 -0.0006 24 7 2.1571 -1.1467 0.0005 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 1.6489 2.1374 -0.0004 29 1 8.7987 0.0691 2.1952 30 1 6.7556 3.6752 2.6835 31 1 8.0847 5.7439 2.5871 32 1 8.3963 6.9108 0.4426 33 1 7.3638 6.0243 -1.6081 34 1 6.0249 3.9614 -1.5221 35 1 5.3136 -0.1076 -0.0121 36 1 3.9651 -2.1669 -0.0006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336251549.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:50 Heat of formation + Delta-G solvation = 42.688380 kcal Electronic energy + Delta-G solvation = -21736.943898 eV Core-core repulsion = 18572.603621 eV Total energy + Delta-G solvation = -3164.340277 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.40447 -39.31664 -37.56403 -35.22439 -32.66985 -32.33345 -31.89789 -30.32899 -29.15377 -27.26428 -25.44179 -24.15355 -22.26779 -22.00129 -21.49265 -19.29775 -18.26874 -16.89676 -16.03424 -15.91981 -15.34793 -15.23416 -14.87039 -14.62041 -14.17802 -13.83253 -13.67244 -13.32460 -12.91926 -12.84181 -12.70767 -12.47041 -12.36319 -12.12860 -12.02397 -11.37443 -11.15309 -11.00773 -10.74622 -10.62123 -10.19475 -9.57561 -9.52333 -9.25933 -8.87199 -8.75518 -8.43235 -8.31309 -7.53393 -6.72278 -4.39642 1.31550 1.60037 1.94108 1.99757 3.05924 3.16847 3.23064 3.48925 3.92485 4.01445 4.30075 4.36119 4.66274 4.83532 5.17635 5.29726 5.44306 5.46949 5.53127 5.63380 5.66784 5.74583 5.80122 5.98657 6.02845 6.10184 6.15437 6.24474 6.33883 6.50727 6.58903 6.80290 6.89176 7.05060 7.07857 7.13838 7.18473 7.54007 7.76988 8.01270 8.37707 8.58772 8.96086 9.25689 10.33401 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.020378 B = 0.006654 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.695694 B = 4207.048475 C = 5074.193936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.103 3.897 3 C -0.130 4.130 4 C -0.055 4.055 5 C 0.521 3.479 6 O -0.564 6.564 7 N -0.403 5.403 8 C -0.363 4.363 9 H 0.115 0.885 10 C 0.083 3.917 11 N -0.843 5.843 12 Si 0.858 3.142 13 H -0.251 1.251 14 H -0.286 1.286 15 H -0.260 1.260 16 C 0.153 3.847 17 C -0.119 4.119 18 C -0.112 4.112 19 C -0.149 4.149 20 C -0.113 4.113 21 C -0.129 4.129 22 C -0.113 4.113 23 C 0.082 3.918 24 N -0.482 5.482 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.134 0.866 29 H 0.281 0.719 30 H 0.132 0.868 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.166 0.834 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.568 2.521 -2.719 5.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.035 4.035 3 C -0.151 4.151 4 C -0.066 4.066 5 C 0.313 3.687 6 O -0.447 6.447 7 N -0.116 5.116 8 C -0.488 4.488 9 H 0.132 0.868 10 C -0.128 4.128 11 N -0.476 5.476 12 Si 0.682 3.318 13 H -0.175 1.175 14 H -0.212 1.212 15 H -0.184 1.184 16 C 0.059 3.941 17 C -0.139 4.139 18 C -0.131 4.131 19 C -0.168 4.168 20 C -0.132 4.132 21 C -0.149 4.149 22 C -0.132 4.132 23 C -0.074 4.074 24 N -0.193 5.193 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.152 0.848 29 H 0.092 0.908 30 H 0.150 0.850 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.183 0.817 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.109 2.072 -2.890 5.434 hybrid contribution 1.385 0.912 -0.431 1.713 sum -2.724 2.984 -3.321 5.230 Atomic orbital electron populations 1.20619 0.89162 1.03000 1.02597 1.21036 0.96671 0.88123 0.97702 1.21966 0.93492 0.99352 1.00310 1.20183 0.93420 0.94220 0.98800 1.18391 0.83062 0.87391 0.79879 1.90690 1.71111 1.36985 1.45902 1.41303 1.16635 1.10060 1.43563 1.19166 0.94698 1.05623 1.29334 0.86771 1.25297 0.96838 0.94876 0.95783 1.69665 1.14965 1.32414 1.30522 0.87074 0.80772 0.80659 0.83266 1.17475 1.21206 1.18446 1.17971 0.94933 0.87847 0.93343 1.21087 0.99239 0.95654 0.97879 1.20894 0.99105 0.95440 0.97620 1.20936 1.02214 1.00566 0.93109 1.20852 0.98116 0.96126 0.98113 1.21071 0.99871 0.96918 0.97072 1.23022 1.03896 0.91461 0.94868 1.22682 0.88894 0.98616 0.97225 1.67283 1.10662 1.29361 1.11981 0.90915 0.90811 0.91046 0.84773 0.90833 0.85018 0.86416 0.86822 0.86547 0.86051 0.81665 0.82702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.18 10.16 36.00 0.37 -0.81 16 2 C 0.10 1.70 6.78 -82.64 -0.56 1.14 16 3 C -0.13 -2.37 9.34 -39.00 -0.36 -2.74 16 4 C -0.06 -1.14 5.42 -104.65 -0.57 -1.71 16 5 C 0.52 12.08 7.14 -12.28 -0.09 11.99 16 6 O -0.56 -13.84 15.28 5.31 0.08 -13.76 16 7 N -0.40 -9.51 2.41 -59.94 -0.14 -9.65 16 8 C -0.36 -8.79 6.05 -15.02 -0.09 -8.88 16 9 H 0.11 2.92 6.82 -52.49 -0.36 2.56 16 10 C 0.08 2.04 5.05 -17.47 -0.09 1.96 16 11 N -0.84 -21.50 13.95 55.50 0.77 -20.73 16 12 Si 0.86 19.69 24.11 -169.99 -4.10 15.60 16 13 H -0.25 -5.73 6.26 56.52 0.35 -5.38 16 14 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.26 -6.11 6.91 56.52 0.39 -5.71 16 16 C 0.15 3.46 2.82 -83.72 -0.24 3.22 16 17 C -0.12 -2.49 7.64 -39.37 -0.30 -2.80 16 18 C -0.11 -2.01 9.82 -39.61 -0.39 -2.40 16 19 C -0.15 -2.53 10.04 -39.53 -0.40 -2.93 16 20 C -0.11 -2.06 10.04 -39.62 -0.40 -2.46 16 21 C -0.13 -2.76 7.01 -39.36 -0.28 -3.03 16 22 C -0.11 -2.20 7.97 -39.00 -0.31 -2.51 16 23 C 0.08 1.43 11.17 -17.60 -0.20 1.23 16 24 N -0.48 -8.48 10.25 -9.54 -0.10 -8.58 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 28 H 0.13 2.28 8.03 -52.48 -0.42 1.86 16 29 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.13 2.82 7.80 -52.48 -0.41 2.41 16 31 H 0.12 1.75 8.06 -52.48 -0.42 1.33 16 32 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 33 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 34 H 0.12 2.67 7.21 -52.48 -0.38 2.29 16 35 H 0.17 3.43 5.96 -52.49 -0.31 3.12 16 36 H 0.16 2.26 8.06 -52.49 -0.42 1.83 16 LS Contribution 303.46 15.07 4.57 4.57 Total: -1.00 -28.22 303.46 -6.84 -35.06 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -4.03 Total: 8.20 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -3.90 Total: -10.72 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.53 Total: -38.96 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.08 Total: -13.76 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.10 Total: 15.60 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.22 -6.84 -35.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336251549.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.747 kcal (2) G-P(sol) polarization free energy of solvation -28.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds