Wall clock time and date at job start Tue Mar 31 2020 05:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31687 * 119.72016 * 2 1 4 4 C 1.31935 * 121.88380 * 180.33704 * 3 2 1 5 5 C 1.38353 * 121.08338 * 359.65809 * 4 3 2 6 6 C 1.38351 * 119.30888 * 0.02562 * 5 4 3 7 7 C 1.39551 * 119.71693 * 179.71313 * 2 1 3 8 8 C 1.47784 * 120.56144 * 359.97262 * 7 2 1 9 9 O 1.21561 * 119.99990 * 1.92991 * 8 7 2 10 10 N 1.34772 * 119.99807 * 181.92541 * 8 7 2 11 11 C 1.39015 * 120.00048 * 184.32252 * 10 8 7 12 12 C 1.38675 * 120.29104 * 327.21761 * 11 10 8 13 13 C 1.38204 * 120.03409 * 180.27394 * 12 11 10 14 14 C 1.38882 * 120.61444 * 359.48126 * 13 12 11 15 15 C 1.36452 * 120.59002 * 0.51613 * 14 13 12 16 16 C 1.40740 * 119.94132 * 359.74950 * 15 14 13 17 17 C 1.41052 * 120.30253 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00162 * 145.75537 * 17 16 15 19 19 C 1.39966 * 119.99765 * 325.75121 * 17 16 15 20 20 N 1.30847 * 119.99852 * 358.31510 * 19 17 16 21 21 Si 1.86801 * 119.99904 * 178.31488 * 19 17 16 22 22 H 1.48506 * 109.47102 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47099 * 119.99957 * 21 19 17 24 24 H 1.48500 * 109.47040 * 240.00156 * 21 19 17 25 25 H 1.08999 * 109.47418 * 263.87056 * 1 2 3 26 26 H 1.09003 * 109.47162 * 23.86412 * 1 2 3 27 27 H 1.09002 * 109.47289 * 143.86502 * 1 2 3 28 28 H 1.07994 * 119.45694 * 179.67879 * 4 3 2 29 29 H 1.07994 * 120.35081 * 179.97438 * 5 4 3 30 30 H 1.07997 * 120.86080 * 180.02562 * 6 5 4 31 31 H 0.97005 * 120.00460 * 4.33121 * 10 8 7 32 32 H 1.08000 * 119.98153 * 359.97438 * 12 11 10 33 33 H 1.07996 * 119.68823 * 179.74529 * 13 12 11 34 34 H 1.08002 * 119.70344 * 180.28609 * 14 13 12 35 35 H 1.07998 * 120.03301 * 179.76452 * 15 14 13 36 36 H 0.97002 * 119.99976 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1436 0.0000 4 6 3.4782 1.1935 -0.0066 5 6 4.2368 0.0364 -0.0068 6 6 3.5992 -1.1914 -0.0005 7 6 2.1987 -1.2120 0.0061 8 6 1.4661 -2.4954 0.0131 9 8 0.2510 -2.5017 -0.0218 10 7 2.1451 -3.6587 0.0581 11 6 1.4615 -4.8662 -0.0259 12 6 0.1852 -4.9858 0.5033 13 6 -0.4873 -6.1904 0.4218 14 6 0.0985 -7.2871 -0.1969 15 6 1.3530 -7.1977 -0.7262 16 6 2.0620 -5.9841 -0.6519 17 6 3.3590 -5.8830 -1.1969 18 1 3.6857 -4.9563 -1.6450 19 6 4.2226 -6.9838 -1.1570 20 7 3.8387 -8.0961 -0.5847 21 14 5.9232 -6.8648 -1.9207 22 1 6.1120 -5.5106 -2.5002 23 1 6.9522 -7.1052 -0.8774 24 1 6.0570 -7.8842 -2.9922 25 1 -0.3634 -0.1097 1.0218 26 1 -0.3634 0.9398 -0.4158 27 1 -0.3634 -0.8300 -0.6060 28 1 3.9734 2.1532 -0.0116 29 1 5.3153 0.0910 -0.0126 30 1 4.1666 -2.1103 0.0000 31 1 3.1108 -3.6534 0.1493 32 1 -0.2815 -4.1385 0.9836 33 1 -1.4794 -6.2784 0.8394 34 1 -0.4422 -8.2201 -0.2564 35 1 1.8015 -8.0572 -1.2020 36 1 4.4371 -8.8590 -0.5573 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336256143.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:22 Heat of formation + Delta-G solvation = 23.363372 kcal Electronic energy + Delta-G solvation = -21164.573540 eV Core-core repulsion = 17999.395268 eV Total energy + Delta-G solvation = -3165.178273 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.65909 -39.09127 -37.18682 -34.23546 -33.68717 -32.72419 -32.30383 -29.66887 -28.69891 -27.40106 -25.34385 -24.39801 -22.28648 -21.69247 -20.82965 -19.59433 -17.77068 -17.18803 -16.74261 -16.23230 -15.58531 -15.24949 -15.00663 -14.69688 -14.21407 -13.82349 -13.50255 -13.15543 -12.96736 -12.69826 -12.39624 -12.31394 -12.23185 -11.81578 -11.75449 -11.31121 -11.23387 -11.00772 -10.52789 -10.12168 -9.89529 -9.80659 -9.67863 -9.36172 -9.26746 -8.97546 -8.73263 -7.37672 -7.02436 -6.70197 -4.50330 0.71367 1.17886 2.60563 2.84295 3.00184 3.02995 3.13569 3.32553 3.72627 3.84844 3.97049 4.31921 4.59805 4.73238 4.75132 4.86850 5.11902 5.45216 5.55088 5.57618 5.78712 5.92465 5.99386 6.14728 6.27843 6.34242 6.46564 6.52996 6.70499 6.89005 7.01020 7.11727 7.22326 7.60216 7.64342 7.88274 7.91963 8.03254 8.06031 8.33262 8.49536 8.73675 8.77642 8.93742 10.16313 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.015660 B = 0.005919 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.568483 B = 4729.478729 C = 6394.994103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.186 3.814 3 N -0.494 5.494 4 C 0.118 3.882 5 C -0.189 4.189 6 C -0.041 4.041 7 C -0.179 4.179 8 C 0.544 3.456 9 O -0.527 6.527 10 N -0.627 5.627 11 C 0.018 3.982 12 C -0.092 4.092 13 C -0.216 4.216 14 C -0.118 4.118 15 C -0.137 4.137 16 C 0.100 3.900 17 C -0.472 4.472 18 H 0.074 0.926 19 C 0.075 3.925 20 N -0.805 5.805 21 Si 0.910 3.090 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.273 1.273 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.113 0.887 28 H 0.157 0.843 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.402 0.598 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.125 0.875 36 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.966 10.493 1.056 10.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.048 3.952 3 N -0.204 5.204 4 C -0.039 4.039 5 C -0.209 4.209 6 C -0.068 4.068 7 C -0.184 4.184 8 C 0.332 3.668 9 O -0.407 6.407 10 N -0.268 5.268 11 C -0.075 4.075 12 C -0.112 4.112 13 C -0.236 4.236 14 C -0.137 4.137 15 C -0.157 4.157 16 C 0.096 3.904 17 C -0.503 4.503 18 H 0.093 0.907 19 C -0.142 4.142 20 N -0.431 5.431 21 Si 0.735 3.265 22 H -0.186 1.186 23 H -0.199 1.199 24 H -0.198 1.198 25 H 0.098 0.902 26 H 0.084 0.916 27 H 0.131 0.869 28 H 0.175 0.825 29 H 0.157 0.843 30 H 0.159 0.841 31 H 0.238 0.762 32 H 0.132 0.868 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.143 0.857 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.751 11.035 1.076 11.224 hybrid contribution 2.090 -0.883 -0.243 2.282 sum 3.842 10.152 0.833 10.887 Atomic orbital electron populations 1.21167 0.87561 1.04237 1.04276 1.21548 0.97655 0.86497 0.89549 1.67644 1.09920 1.28858 1.13966 1.22920 0.89550 0.98584 0.92839 1.22052 1.01694 0.93071 1.04103 1.21896 0.93401 0.99152 0.92308 1.20933 0.94362 0.95460 1.07692 1.17981 0.87327 0.83301 0.78235 1.90634 1.13057 1.86550 1.50454 1.42771 1.10683 1.04169 1.69181 1.17819 0.95481 0.86443 1.07779 1.20735 0.94166 0.97010 0.99307 1.20381 0.99886 0.93890 1.09397 1.20542 0.96189 0.96776 1.00152 1.21025 0.92836 0.98913 1.02950 1.17447 0.92909 0.90439 0.89568 1.19325 0.97377 0.98451 1.35143 0.90747 1.25842 1.00546 0.94516 0.93268 1.69775 1.36840 1.02683 1.33814 0.86225 0.81349 0.79512 0.79401 1.18616 1.19937 1.19809 0.90220 0.91620 0.86871 0.82530 0.84289 0.84097 0.76168 0.86774 0.89034 0.89246 0.85718 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.69 9.02 36.00 0.32 -1.37 16 2 C 0.19 2.88 6.82 -82.17 -0.56 2.32 16 3 N -0.49 -7.08 10.26 -9.14 -0.09 -7.17 16 4 C 0.12 1.35 11.17 -17.47 -0.20 1.15 16 5 C -0.19 -2.05 10.10 -39.50 -0.40 -2.45 16 6 C -0.04 -0.54 9.64 -38.86 -0.37 -0.92 16 7 C -0.18 -2.86 5.89 -104.82 -0.62 -3.47 16 8 C 0.54 10.38 7.60 -12.36 -0.09 10.28 16 9 O -0.53 -11.07 10.54 5.31 0.06 -11.01 16 10 N -0.63 -12.59 4.93 -10.35 -0.05 -12.64 16 11 C 0.02 0.44 6.37 -83.20 -0.53 -0.09 16 12 C -0.09 -2.16 8.70 -39.43 -0.34 -2.50 16 13 C -0.22 -4.90 10.04 -39.36 -0.39 -5.29 16 14 C -0.12 -2.73 9.96 -39.99 -0.40 -3.13 16 15 C -0.14 -3.45 8.58 -39.28 -0.34 -3.79 16 16 C 0.10 2.52 5.54 -106.64 -0.59 1.93 16 17 C -0.47 -11.52 8.23 -37.87 -0.31 -11.84 16 18 H 0.07 1.73 7.58 -52.49 -0.40 1.33 16 19 C 0.07 1.76 5.37 -17.32 -0.09 1.66 16 20 N -0.80 -19.79 10.79 55.55 0.60 -19.19 16 21 Si 0.91 17.60 29.56 -169.99 -5.02 12.58 16 22 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 23 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 24 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 25 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.11 1.87 5.60 -51.93 -0.29 1.58 16 28 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.14 1.65 6.55 -52.49 -0.34 1.31 16 31 H 0.40 7.24 6.16 -40.82 -0.25 6.99 16 32 H 0.11 2.62 6.05 -52.49 -0.32 2.30 16 33 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 34 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.13 3.23 6.32 -52.49 -0.33 2.90 16 36 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 LS Contribution 305.47 15.07 4.60 4.60 Total: -1.00 -28.41 305.47 -8.43 -36.84 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -3.60 Total: 13.49 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -4.91 Total: -17.50 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.45 Total: -39.00 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.06 Total: -11.01 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.02 Total: 12.58 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.41 -8.43 -36.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336256143.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.204 kcal (2) G-P(sol) polarization free energy of solvation -28.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds