Wall clock time and date at job start Tue Mar 31 2020 05:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31696 * 119.65456 * 2 1 4 4 C 1.32509 * 121.75349 * 180.26666 * 3 2 1 5 5 N 1.38857 * 119.57571 * 179.70937 * 4 3 2 6 6 C 1.34780 * 120.00030 * 4.79417 * 5 4 3 7 7 O 1.21758 * 119.99598 * 354.92479 * 6 5 4 8 8 C 1.41806 * 120.00372 * 174.91425 * 6 5 4 9 9 H 1.08002 * 119.99509 * 359.73079 * 8 6 5 10 10 C 1.40131 * 120.00260 * 180.02562 * 8 6 5 11 11 N 1.30636 * 119.99858 * 0.02562 * 10 8 6 12 12 Si 1.86801 * 120.00379 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46529 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47087 * 119.99914 * 12 10 8 15 15 H 1.48499 * 109.47235 * 240.00329 * 12 10 8 16 16 C 1.39338 * 120.85461 * 359.42846 * 4 3 2 17 17 C 1.38043 * 119.22563 * 0.27838 * 16 4 3 18 18 C 1.39366 * 119.65781 * 179.69942 * 2 1 3 19 19 C 1.48286 * 120.45733 * 0.04579 * 18 2 1 20 20 C 1.39416 * 120.12904 * 309.70027 * 19 18 2 21 21 C 1.37995 * 119.86721 * 179.76987 * 20 19 18 22 22 C 1.38345 * 120.12939 * 0.50773 * 21 20 19 23 23 C 1.38346 * 120.25646 * 359.74723 * 22 21 20 24 24 C 1.37992 * 120.12651 * 359.97438 * 23 22 21 25 25 H 1.08995 * 109.47218 * 270.29347 * 1 2 3 26 26 H 1.09000 * 109.47121 * 30.30419 * 1 2 3 27 27 H 1.09006 * 109.46590 * 150.29977 * 1 2 3 28 28 H 0.96997 * 120.00313 * 184.80181 * 5 4 3 29 29 H 0.96996 * 119.99811 * 179.97438 * 11 10 8 30 30 H 1.08006 * 120.38992 * 180.30006 * 16 4 3 31 31 H 1.08005 * 120.80363 * 180.02562 * 17 16 4 32 32 H 1.08003 * 120.06419 * 0.02562 * 20 19 18 33 33 H 1.08000 * 119.93365 * 180.25415 * 21 20 19 34 34 H 1.07999 * 119.86835 * 179.76238 * 22 21 20 35 35 H 1.08001 * 119.93310 * 179.97438 * 23 22 21 36 36 H 1.08002 * 120.06258 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1587 1.1445 0.0000 4 6 3.4829 1.1930 -0.0052 5 7 4.1235 2.4249 -0.0111 6 6 3.4029 3.5598 0.0861 7 8 2.1863 3.5102 0.0859 8 6 4.0615 4.8114 0.1888 9 1 5.1406 4.8549 0.1935 10 6 3.3122 5.9912 0.2904 11 7 2.0069 5.9380 0.2910 12 14 4.1797 7.6401 0.4249 13 1 5.6496 7.4292 0.4022 14 1 3.7850 8.5018 -0.7182 15 1 3.7944 8.2997 1.6983 16 6 4.2408 0.0238 0.0009 17 6 3.5966 -1.1970 0.0068 18 6 2.1967 -1.2111 0.0064 19 6 1.4578 -2.4967 0.0121 20 6 0.4407 -2.7152 0.9402 21 6 -0.2466 -3.9118 0.9376 22 6 0.0791 -4.8977 0.0233 23 6 1.0910 -4.6885 -0.8966 24 6 1.7813 -3.4937 -0.9072 25 1 -0.3633 0.0053 1.0276 26 1 -0.3633 0.8872 -0.5185 27 1 -0.3633 -0.8927 -0.5092 28 1 5.0896 2.4689 -0.0853 29 1 1.4883 6.7546 0.3617 30 1 5.3198 0.0722 0.0015 31 1 4.1590 -2.1191 0.0121 32 1 0.1884 -1.9478 1.6571 33 1 -1.0375 -4.0806 1.6534 34 1 -0.4590 -5.8341 0.0275 35 1 1.3412 -5.4619 -1.6078 36 1 2.5708 -3.3314 -1.6260 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336425366.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:20 Heat of formation + Delta-G solvation = 30.286881 kcal Electronic energy + Delta-G solvation = -20683.100325 eV Core-core repulsion = 17518.222278 eV Total energy + Delta-G solvation = -3164.878047 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.14835 -38.78931 -37.22252 -34.07835 -32.62718 -32.48675 -31.64154 -30.79844 -29.05600 -27.28559 -26.25426 -23.39315 -22.43935 -21.76270 -21.05796 -19.95743 -17.56921 -17.06386 -16.31428 -15.76420 -15.62234 -15.19597 -14.73926 -14.19501 -14.09229 -13.87824 -13.45266 -13.28779 -12.89743 -12.68471 -12.57502 -12.48449 -12.00336 -11.76752 -11.66797 -11.30076 -11.14947 -10.97966 -10.95159 -10.61976 -10.29144 -9.76371 -9.09845 -8.95988 -8.89827 -8.81608 -8.51537 -7.42798 -7.08859 -6.31133 -4.86384 1.13262 1.43657 1.81307 2.05575 3.05567 3.13705 3.18173 3.82909 3.95877 4.27559 4.30783 4.61304 4.85076 4.96045 4.97097 5.06341 5.14127 5.23881 5.48070 5.53617 5.65007 5.72890 5.81259 5.94782 5.97554 6.03786 6.07854 6.12834 6.43028 6.44747 6.50197 6.54365 6.58214 6.80299 7.01951 7.10066 7.26061 7.63533 7.97686 8.10437 8.74853 8.83251 9.37227 10.43754 10.67173 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.043034 B = 0.003514 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.497694 B = 7965.730042 C = 8455.836237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.184 3.816 3 N -0.468 5.468 4 C 0.403 3.597 5 N -0.671 5.671 6 C 0.529 3.471 7 O -0.514 6.514 8 C -0.540 4.540 9 H 0.069 0.931 10 C 0.087 3.913 11 N -0.747 5.747 12 Si 0.913 3.087 13 H -0.262 1.262 14 H -0.274 1.274 15 H -0.274 1.274 16 C -0.250 4.250 17 C -0.028 4.028 18 C -0.188 4.188 19 C -0.009 4.009 20 C -0.112 4.112 21 C -0.119 4.119 22 C -0.132 4.132 23 C -0.120 4.120 24 C -0.116 4.116 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.398 0.602 29 H 0.272 0.728 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.283 -16.788 -0.415 16.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.042 3.958 3 N -0.184 5.184 4 C 0.168 3.832 5 N -0.313 5.313 6 C 0.335 3.665 7 O -0.391 6.391 8 C -0.576 4.576 9 H 0.087 0.913 10 C -0.136 4.136 11 N -0.375 5.375 12 Si 0.737 3.263 13 H -0.186 1.186 14 H -0.200 1.200 15 H -0.200 1.200 16 C -0.275 4.275 17 C -0.053 4.053 18 C -0.193 4.193 19 C -0.010 4.010 20 C -0.130 4.130 21 C -0.137 4.137 22 C -0.150 4.150 23 C -0.138 4.138 24 C -0.134 4.134 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.232 0.768 29 H 0.083 0.917 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.197 -15.702 -0.384 15.752 hybrid contribution 1.609 0.043 0.048 1.610 sum 0.412 -15.658 -0.336 15.667 Atomic orbital electron populations 1.20784 0.89555 1.03063 1.02631 1.21314 0.96568 0.86727 0.91178 1.67869 1.07290 1.26868 1.16351 1.18949 0.88696 0.86636 0.88953 1.44727 1.10284 1.04024 1.72313 1.17272 0.87662 0.82218 0.79310 1.90766 1.12695 1.84567 1.51056 1.20073 0.94312 0.90342 1.52830 0.91268 1.25738 0.94547 1.00646 0.92635 1.70026 1.05911 1.29045 1.32529 0.86233 0.80340 0.81334 0.78416 1.18625 1.19955 1.19975 1.21359 1.00286 0.92045 1.13764 1.21118 0.92857 0.97130 0.94212 1.19286 0.93470 0.92691 1.13816 1.18656 0.95087 0.92483 0.94796 1.21358 0.95839 0.97319 0.98475 1.21066 0.99851 0.93736 0.99088 1.21118 0.98317 0.99140 0.96442 1.21037 0.96591 0.97176 0.99027 1.21254 1.00227 0.93252 0.98682 0.90736 0.90210 0.91127 0.76836 0.91718 0.85490 0.85650 0.85804 0.86222 0.86524 0.86355 0.86172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.72 8.63 36.01 0.31 -1.41 16 2 C 0.18 3.60 6.79 -82.23 -0.56 3.04 16 3 N -0.47 -11.18 7.75 -8.36 -0.06 -11.24 16 4 C 0.40 8.85 7.42 -154.99 -1.15 7.70 16 5 N -0.67 -15.47 5.36 -14.01 -0.08 -15.55 16 6 C 0.53 15.04 7.53 -14.89 -0.11 14.92 16 7 O -0.51 -16.58 13.12 5.14 0.07 -16.52 16 8 C -0.54 -14.84 9.31 -37.51 -0.35 -15.19 16 9 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 10 C 0.09 2.36 5.50 -17.35 -0.10 2.26 16 11 N -0.75 -21.85 11.73 55.55 0.65 -21.20 16 12 Si 0.91 19.49 29.56 -169.99 -5.02 14.47 16 13 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 14 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 15 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 16 C -0.25 -4.27 9.92 -39.24 -0.39 -4.66 16 17 C -0.03 -0.43 9.67 -38.99 -0.38 -0.81 16 18 C -0.19 -3.10 5.49 -104.68 -0.57 -3.68 16 19 C -0.01 -0.13 4.72 -104.89 -0.50 -0.63 16 20 C -0.11 -1.42 7.93 -39.23 -0.31 -1.73 16 21 C -0.12 -1.28 10.03 -39.63 -0.40 -1.68 16 22 C -0.13 -1.33 10.04 -39.50 -0.40 -1.73 16 23 C -0.12 -1.26 10.03 -39.63 -0.40 -1.66 16 24 C -0.12 -1.41 9.54 -39.23 -0.37 -1.79 16 25 H 0.07 1.13 7.51 -51.93 -0.39 0.74 16 26 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 27 H 0.07 1.01 6.45 -51.93 -0.33 0.68 16 28 H 0.40 7.54 8.65 -40.82 -0.35 7.19 16 29 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 30 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 31 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 32 H 0.12 1.55 6.88 -52.48 -0.36 1.19 16 33 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.12 1.34 8.05 -52.49 -0.42 0.92 16 LS Contribution 313.50 15.07 4.72 4.72 Total: -1.00 -34.76 313.50 -9.33 -44.09 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -3.94 Total: 8.24 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -5.67 Total: -7.02 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.51 Total: -47.99 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: 0.07 Total: -16.52 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.76 -9.33 -44.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336425366.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.376 kcal (2) G-P(sol) polarization free energy of solvation -34.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds